mRNA_Ecto-sp8_S_contig102214.364.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102214.364.1
Unique NamemRNA_Ecto-sp8_S_contig102214.364.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: D8LPP5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPP5_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.430e-40
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    4 QDLTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAHRWQATRKALVIAMRTWAGVHLL 219
            QDLTEPLV TLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAHRWQATRKALVIAMRTWAGVHLL
Sbjct:   75 QDLTEPLVTTLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAHRWQATRKALVIAMRTWAGVHLL 146
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A836CPS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.270e-20
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    4 QDLTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAHRWQATRKALVIAMRTWAGVHLL 219
            QDL +PL++ +T ++EDP+TR+++RP +E+ QLL+GFTD D P G ER  RWQA R A+V  MRTW+G+ LL
Sbjct:  615 QDLVDPLLSAITFLLEDPSTRQFIRPGVELQQLLSGFTDTDWPAGLERHQRWQAARGAVVALMRTWSGIILL 686
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A1M8A060_MALS4 (Similar to S.cerevisiae protein TSC11 (Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p)) n=2 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8A060_MALS4)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 MQDLTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAHRWQATRKALVIAMRTWAGVHLL 219
            + DL  PLV  L ++++ PATRRY+ P  ++  +L GF+ +  P       R Q T   + + +R+WAG+  L
Sbjct:  326 LPDLAVPLVTNLLTLLDRPATRRYISPGTDLEAVLAGFSTVPMPKTDIHIQRLQTTGHIMTLLLRSWAGLFYL 398
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: UPI0020143694 (rapamycin-insensitive companion of mTOR isoform X1 n=4 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020143694)

HSP 1 Score: 52.8 bits (125), Expect = 3.070e-6
Identity = 24/76 (31.58%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   10 LTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAH---------RWQATRKALVIAMRTWAGV 210
            + E L+ T+  ++  P TR+Y+RP +E+ Q+L  +TD      P+ A          R+ A++ A+V A R+W+G+
Sbjct:  230 INEALITTILHLLNHPHTRQYIRPDVELEQILAPYTDFHYRHNPDTAEAQVKEDREARFLASKMAIVAAFRSWSGI 305
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A3N0YU60_ANAGA (Rapamycin-insensitive companion of mTOR n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YU60_ANAGA)

HSP 1 Score: 52.8 bits (125), Expect = 3.080e-6
Identity = 24/76 (31.58%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   10 LTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERAH---------RWQATRKALVIAMRTWAGV 210
            + E L+ T+  ++  P TR+Y+RP +E+ Q+L  +TD      P+ A          R+ A++ A+V A R+W+G+
Sbjct:  741 INEALITTILHLLNHPHTRQYIRPDVELEQILAPYTDFHYRHNPDTAEAQVKEDREARFLASKMAIVAAFRSWSGI 816
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A6P8GC38_CLUHA (rapamycin-insensitive companion of mTOR isoform X1 n=8 Tax=Clupeidae TaxID=55118 RepID=A0A6P8GC38_CLUHA)

HSP 1 Score: 52.0 bits (123), Expect = 5.750e-6
Identity = 24/76 (31.58%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   10 LTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPE---------RAHRWQATRKALVIAMRTWAGV 210
            + E L+AT+  ++  P TR+YVRP +E+ Q+L  +TD      P+         R  R+ A++ ++V + R+W+G+
Sbjct:  231 INEALIATILHLLNHPNTRQYVRPDVELEQILAPYTDFHYRHNPDTSESQLKEDREARFLASKMSIVASFRSWSGI 306
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A665T2J1_ECHNA (RPTOR independent companion of MTOR, complex 2b n=2 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665T2J1_ECHNA)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   10 LTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPE---------RAHRWQATRKALVIAMRTWAGV 210
            + E L+ T+  ++  P TR+YVRP +E+ Q+L  +TD      P+         R  R+ A++ ++V + R+W+G+
Sbjct:  142 INEALITTVLHLLNHPHTRQYVRPDVELEQILAPYTDFHYRHAPDIAEGKFKEDRESRFMASKMSIVASFRSWSGI 217
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A4U5V8B1_COLLU (Rapamycin-insensitive companion of mTOR AVO3-like protein n=7 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5V8B1_COLLU)

HSP 1 Score: 50.4 bits (119), Expect = 2.010e-5
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   10 LTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPE---------RAHRWQATRKALVIAMRTWAGV 210
            + E L+ T+  ++  P TR+YVRP +E+ Q+L  +TD      P+         R  R+ A++ ++V + R+W+G+
Sbjct:  158 INEALITTILHLLNHPHTRQYVRPDVELEQILAPYTDFHYRHTPDIAEGQLKEDREARFMASKMSIVASFRSWSGI 233
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: UPI001C09E2D5 (rapamycin-insensitive companion of mTOR isoform X2 n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C09E2D5)

HSP 1 Score: 50.4 bits (119), Expect = 2.010e-5
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   10 LTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPE---------RAHRWQATRKALVIAMRTWAGV 210
            + E L+ T+  ++  P TR+YVRP +E+ Q+L  +TD      P+         R  R+ A++ ++V + R+W+G+
Sbjct:  223 INEALITTILHLLNHPNTRQYVRPDVELEQILAPYTDFHYRHNPDTSEGQLKEDREARFLASKMSIVASFRSWSGI 298
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BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Match: A0A8C4R2C3_EPTBU (Uncharacterized protein n=4 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R2C3_EPTBU)

HSP 1 Score: 48.9 bits (115), Expect = 6.970e-5
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    1 MQDLTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLD----APPGP--ERAHRWQATRKALVIAMRTWAGV 210
            M  + E LV T T ++  P+TR  +R + E+ Q+L  FTDL     A  G   E   R QA+R A+V A+R+WAG+
Sbjct:  220 MSRMNEALVTTATQLVNHPSTRCLLRSN-ELEQILAPFTDLHYRLRAEDGQREEEEARLQASRMAVVAALRSWAGL 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102214.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LPP5_ECTSI3.430e-4098.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPS2_9STRA6.270e-2055.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1M8A060_MALS41.830e-734.25Similar to S.cerevisiae protein TSC11 (Subunit of ... [more]
UPI00201436943.070e-631.58rapamycin-insensitive companion of mTOR isoform X1... [more]
A0A3N0YU60_ANAGA3.080e-631.58Rapamycin-insensitive companion of mTOR n=1 Tax=An... [more]
A0A6P8GC38_CLUHA5.750e-631.58rapamycin-insensitive companion of mTOR isoform X1... [more]
A0A665T2J1_ECHNA1.070e-530.26RPTOR independent companion of MTOR, complex 2b n=... [more]
A0A4U5V8B1_COLLU2.010e-530.26Rapamycin-insensitive companion of mTOR AVO3-like ... [more]
UPI001C09E2D52.010e-530.26rapamycin-insensitive companion of mTOR isoform X2... [more]
A0A8C4R2C3_EPTBU6.970e-540.79Uncharacterized protein n=4 Tax=Eptatretus burgeri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102214contigEcto-sp8_S_contig102214:5..369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score149.1
Seed ortholog evalue8.3e-34
Seed eggNOG ortholog2880.D8LPP5
Model size219
KEGG koko:K08267
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001932,GO:0001934,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007163,GO:0007190,GO:0007492,GO:0007498,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010648,GO:0016043,GO:0019220,GO:0019222,GO:0022402,GO:0023051,GO:0023056,GO:0023057,GO:0030010,GO:0030029,GO:0030036,GO:0030100,GO:0030234,GO:0030587,GO:0030950,GO:0030952,GO:0031152,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031532,GO:0031667,GO:0031668,GO:0031669,GO:0031932,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032502,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033554,GO:0033674,GO:0038201,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043254,GO:0043327,GO:0043519,GO:0043520,GO:0043549,GO:0043949,GO:0044087,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045806,GO:0045859,GO:0045860,GO:0045937,GO:0046578,GO:0046580,GO:0048382,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050764,GO:0050765,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051056,GO:0051058,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051301,GO:0051338,GO:0051347,GO:0051493,GO:0051703,GO:0051704,GO:0051716,GO:0051896,GO:0051897,GO:0060255,GO:0060627,GO:0061640,GO:0065007,GO:0065009,GO:0071496,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090702,GO:0098630,GO:0098743,GO:0098772,GO:0099120,GO:1902531,GO:1902532,GO:1902533,GO:1903047
Exons2
EggNOG free text desc.establishment or maintenance of actin cytoskeleton polarity
EggNOG OGsKOG3694@1,KOG3694@2759
Cds size219
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.5265498-CDS-Ecto-sp8_S_contig102214:4..611681143120.5265498-CDS-Ecto-sp8_S_contig102214:4..61Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102214 5..61 -
1681143120.5382297-CDS-Ecto-sp8_S_contig102214:207..3691681143120.5382297-CDS-Ecto-sp8_S_contig102214:207..369Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102214 208..369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102214.364.1prot_Ecto-sp8_S_contig102214.364.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102214 5..369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102214.364.1

>prot_Ecto-sp8_S_contig102214.364.1 ID=prot_Ecto-sp8_S_contig102214.364.1|Name=mRNA_Ecto-sp8_S_contig102214.364.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=73bp
MQDLTEPLVATLTSIIEDPATRRYVRPHLEIHQLLTGFTDLDAPPGPERA
HRWQATRKALVIAMRTWAGVHLL
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mRNA from alignment at Ecto-sp8_S_contig102214:5..369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102214.364.1 ID=mRNA_Ecto-sp8_S_contig102214.364.1|Name=mRNA_Ecto-sp8_S_contig102214.364.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=365bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102214:5..369- (Ectocarpus species8 EcLAC_412)
ATGCAGGACCTGACGGAGCCGCTGGTGGCGACACTCACGTCTATCATCGA
GGACCCTGCCACGAGGCGATACGTGCGGCCTCACCTGGAAATTCACCAGC
TGCTGACCGGGTTCACGGATCTTGACGCCCCTCCCGGACCCGAGAGAGCT
CATAGGTGGCAGGTGAGTTTTGGGTCTTTGTGGATGGATGGTTGAGAGCC
CGTCTGTGTATCCGTCGAGTCATCCGCATACAGTAGCTCATCAGCCATTC
CAGACTATTGGGACGCAACGGCAAAACACGATAACCGTCCACCTCTACCC
GTTTTCAGGCTACACGTAAGGCCTTGGTCATAGCAATGCGCACTTGGGCA
GGCGTGCACCTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102214:5..369-

>mRNA_Ecto-sp8_S_contig102214.364.1 ID=mRNA_Ecto-sp8_S_contig102214.364.1|Name=mRNA_Ecto-sp8_S_contig102214.364.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102214:5..369- (Ectocarpus species8 EcLAC_412)
ATGCAGGACCTGACGGAGCCGCTGGTGGCGACACTCACGTCTATCATCGA
GGACCCTGCCACGAGGCGATACGTGCGGCCTCACCTGGAAATTCACCAGC
TGCTGACCGGGTTCACGGATCTTGACGCCCCTCCCGGACCCGAGAGAGCT
CATAGGTGGCAGGCTACACGTAAGGCCTTGGTCATAGCAATGCGCACTTG
GGCAGGCGTGCACCTCTTG
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