mRNA_Ecto-sp8_S_contig1022.362.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1022.362.1
Unique NamemRNA_Ecto-sp8_S_contig1022.362.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1022.362.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.110e-9
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  217 RAIYIYIYAERCSGGEWLPPTIGHRARKGKSQMRRP 324
            RAIYI IY ERCSGGEWLPPTIGHRARK   +  RP
Sbjct:    4 RAIYIDIYTERCSGGEWLPPTIGHRARKAVCRKDRP 39
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BLAST of mRNA_Ecto-sp8_S_contig1022.362.1 vs. uniprot
Match: D8LGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU8_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.240e-5
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3 
Query:  264 MATPNNRAPSEEGEVPDASPARGR 335
            MATPNNRAPSEEGEVPDASPARGR
Sbjct:    1 MATPNNRAPSEEGEVPDASPARGR 24
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1022.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1H2_9PHAE4.110e-977.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGU8_ECTSI3.240e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1022contigEcto-sp8_S_contig1022:12378..14396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons3
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.2555032-CDS-Ecto-sp8_S_contig1022:12377..125301681143120.2555032-CDS-Ecto-sp8_S_contig1022:12377..12530Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1022 12378..12530 +
1681143120.2751346-CDS-Ecto-sp8_S_contig1022:13454..136011681143120.2751346-CDS-Ecto-sp8_S_contig1022:13454..13601Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1022 13455..13601 +
1681143120.2889223-CDS-Ecto-sp8_S_contig1022:14358..143941681143120.2889223-CDS-Ecto-sp8_S_contig1022:14358..14394Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1022 14359..14394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1022.362.1prot_Ecto-sp8_S_contig1022.362.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1022 12378..14394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1022.362.1

>prot_Ecto-sp8_S_contig1022.362.1 ID=prot_Ecto-sp8_S_contig1022.362.1|Name=mRNA_Ecto-sp8_S_contig1022.362.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=112bp
GQTRLRSPACPRSLSGGQRRGPCDRARFQPESWRRAADVVGCWGSLFLFQ
QHFYPNPASRLTAAWRRVGEKGRAIYIYIYAERCSGGEWLPPTIGHRARK
GKSQMRRPRGEG
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mRNA from alignment at Ecto-sp8_S_contig1022:12378..14396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1022.362.1 ID=mRNA_Ecto-sp8_S_contig1022.362.1|Name=mRNA_Ecto-sp8_S_contig1022.362.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2019bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1022:12378..14396+ (Ectocarpus species8 EcLAC_412)
GGACAGACGCGCCTTAGATCACCCGCTTGCCCCAGGAGCTTGAGCGGAGG
CCAACGAAGAGGCCCTTGCGATCGGGCGAGGTTTCAGCCGGAATCTTGGA
GAAGGGCGGCCGACGTAGTAGGTTGCTGGGGGTCTCTTTTTCTCTTTCAG
CAGGTAATTTCATACTGGTATGTTTGCATTTTGGTGCTGAGTTTTGCCTC
ACACACACATCATTTCGAAGACGGCGGGGACGGTGTTGGGGTTGCCGACT
ATGCTGCAGGTCGGTATTCCGTGGCGTGCTTCGCGCCCGAGCGTGTCTCT
CATCTGTGAAGAGAACGGATTCGTTGTCGTTTGCTCCACCTGCCAGTTGC
ATGTACAAGGCGTTGCGATGGGCAACCCTACCTCTGGCACTGGGTGAGAT
AAATCCGTCTTTTTTTACGGGGGTAGAGTTGACTGGTCAGTGCCTCGTTT
GTTTGCCCGTCCGTCTGCTTTGTGTAGTTATGAGCATGCCCGCCGAACGC
TTGCGAGGCTTATCAACACGCTTGCCCGGACTCCTCCTCTTGCTGGGGTT
CTGTCATCGCGATAACGCATGCATGAGGAGCTCTTCACGGAGACACATCA
AGACTTCATTATAGCATCGCCCCAGCGGTGTGCATATGCACTCCCGTCGA
AAGATACTGGGGGGGGTGTTAAGCAGCGTGTTTGCGTGCGGGATTCCATG
CCTTCTGGAGTACATAGTGTCTCCCTGCTGGATTCCTCTGCCCAACACGA
GGTGCCACATGCAAGCCTTCGCTGTACGTCCTGACGGCTATCAAGTCGTC
GAGTTTGGCCCCTTGCGGGGGGAGGCAGGAGACGTGATAAGTCATTTGAT
CATACATACGTAGGAGTTCGGGTTGTGTGTAACAACAACCTGCGGGCGCG
ACTTTTTTTTTTTTCTGCTTTTCGTGAGAAAGGGGAGCAGCCTCGTGAGG
TCATCCCTGCATCGCCCACTCTACTCTATTCACTCTACTCTATTTAGCAT
TTAGCTGCCCAGGTTTTATTTGATGAGTCTCGTTGGCGTCTCCACGTATG
TCGTGTGTTTTTCCTCGTTCCTGGCAGCATTTTTACCCCAATCCAGCGTC
GCGGCTGACAGCGGCCTGGCGTAGGGTAGGGGAGAAGGGCAGGGCCATCT
ACATCTACATCTACGCGGAGCGGTGCTCGGGTGGTGAATGGCTACCCCCA
ACAATCGGGCACCGAGCGAGGAAGGCATGTATCTTTGGCAGACCCGCTGT
TTTTGCCTGCACACAGAAAATAATTCACCACAACACACAACCCTCGAACT
GACAGCCAAGTCACACAACCATTATATCAAGCTGCTCTTGGCGCCAGGCT
CGTTTCTGGTCAACGAGCGTCCTACTGTACGCCGACCCTGGCCAAAATTG
GCGAGCCGTCGTTCTGTATCTTTGTGTCTTGGGTCGGCTTGACGCCGCAC
TATCGGTGAACAGACAGGCCGTGTCTCACACTGCCTGGCGCTGGAAGGAT
CGGTCAGGTTCATATCTACGTTTTCGTTATCCCCCGGTGATTGTCACGAA
TATTCTTATTCGAAGGAACGATGTAGAGGTACCACATATTTGTCCTGTAC
TCGATGCTGTGGTGAAAAATCCCCCCAAGCCCCCCTCCCCCCGAATCCAC
ATCCAGACTACCGTGTGCGATGCGAGATAAAATATTCCCGCGATAACTGT
TTGCCCTTTTTTTTTAGGACTGCTATGCATATGTGTGTAGTTATTTGGGG
GGGGTGGTTCCTTCCGTCACCATATCTAAAGAGTAGTTTTCGTGTTTCGG
GCTCATTTGAAACGTATATATATGACCGCCAGGTGTGGGTGTTTTGTGGG
GGGGTGTGCTCATTCGTGTGTGTGTGAGATCTTGTGCTGTGTACGGTGGT
ACGTGTCACCTGCGATTTCCGTCAACCTCAGCCGCTGCCTCACACACACA
CACACACACACACCGCCCCTGTTTTCAATAGGGGAAGTCCCAGATGCGTC
GCCCGCGAGGGGAAGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1022:12378..14396+

>mRNA_Ecto-sp8_S_contig1022.362.1 ID=mRNA_Ecto-sp8_S_contig1022.362.1|Name=mRNA_Ecto-sp8_S_contig1022.362.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1022:12378..14396+ (Ectocarpus species8 EcLAC_412)
GGACAGACGCGCCTTAGATCACCCGCTTGCCCCAGGAGCTTGAGCGGAGG
CCAACGAAGAGGCCCTTGCGATCGGGCGAGGTTTCAGCCGGAATCTTGGA
GAAGGGCGGCCGACGTAGTAGGTTGCTGGGGGTCTCTTTTTCTCTTTCAG
CAGCATTTTTACCCCAATCCAGCGTCGCGGCTGACAGCGGCCTGGCGTAG
GGTAGGGGAGAAGGGCAGGGCCATCTACATCTACATCTACGCGGAGCGGT
GCTCGGGTGGTGAATGGCTACCCCCAACAATCGGGCACCGAGCGAGGAAG
GGGAAGTCCCAGATGCGTCGCCCGCGAGGGGAAGGG
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