mRNA_Ecto-sp8_S_contig10218.359.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10218.359.1
Unique NamemRNA_Ecto-sp8_S_contig10218.359.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10218.359.1 vs. uniprot
Match: D7G0H0_ECTSI (F-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.230e-45
Identity = 88/108 (81.48%), Postives = 89/108 (82.41%), Query Frame = -1 
Query:    1 WGEGWQEEESESGEGAQPLLPQHHLFGNSGASXXXXXXRASWGAAGEGAGSRQQHGNGGGTGALGESPARGAGLGEEFNRLRRGSSHXXXXXXPLSRLGKRQGYAGRG 324
            WGEGWQEEESESGEGAQPLLPQ HL+GNSGAS       ASWGAAGEGAGSRQQHG GGGTGALGESPA  A LG EFNRLRRGSSH      PLSRLGKRQGYAGRG
Sbjct:  338 WGEGWQEEESESGEGAQPLLPQRHLYGNSGASSYSPPPHASWGAAGEGAGSRQQHGIGGGTGALGESPASAADLGVEFNRLRRGSSHGGGTGEPLSRLGKRQGYAGRG 445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10218.359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0H0_ECTSI5.230e-4581.48F-box domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10218contigEcto-sp8_S_contig10218:6297..6622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.056231-CDS-Ecto-sp8_S_contig10218:6296..66201681143120.056231-CDS-Ecto-sp8_S_contig10218:6296..6620Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10218 6297..6620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10218.359.1prot_Ecto-sp8_S_contig10218.359.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10218 6297..6620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10218.359.1

>prot_Ecto-sp8_S_contig10218.359.1 ID=prot_Ecto-sp8_S_contig10218.359.1|Name=mRNA_Ecto-sp8_S_contig10218.359.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=108bp
APPCVPLSLPKPRQRLAGPTPVGRSPSQAVELFAEAGAACRGFAQGTGSA
AVPMLLPAARAFSRCPPRRARRGRRRRSTAVAEEVVLWKERLRPLSAFAL
LFLPPFAP
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mRNA from alignment at Ecto-sp8_S_contig10218:6297..6622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10218.359.1 ID=mRNA_Ecto-sp8_S_contig10218.359.1|Name=mRNA_Ecto-sp8_S_contig10218.359.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=326bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10218:6297..6622+ (Ectocarpus species8 EcLAC_412)
GCCCCGCCCTGCGTACCCCTGTCGCTTCCCAAGCCGCGACAACGGCTCGC
CGGTCCCACCCCCGTGGGAAGATCCCCGTCGCAGGCGGTTGAACTCTTCG
CCGAGGCCGGCGCCGCGTGCCGGGGATTCGCCCAAGGCACCGGTTCCGCC
GCCGTTCCCATGCTGCTGCCGGCTGCCCGCGCCTTCTCCCGCTGCCCCCC
AAGACGCGCGCGGCGGGGGAGAAGAAGAAGAAGCACCGCTGTTGCCGAAG
AGGTGGTGCTGTGGAAGGAGCGGCTGCGCCCCCTCTCCGCTTTCGCTCTC
CTCTTCTTGCCACCCTTCGCCCCAGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10218:6297..6622+

>mRNA_Ecto-sp8_S_contig10218.359.1 ID=mRNA_Ecto-sp8_S_contig10218.359.1|Name=mRNA_Ecto-sp8_S_contig10218.359.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10218:6297..6622+ (Ectocarpus species8 EcLAC_412)
GCCCCGCCCTGCGTACCCCTGTCGCTTCCCAAGCCGCGACAACGGCTCGC
CGGTCCCACCCCCGTGGGAAGATCCCCGTCGCAGGCGGTTGAACTCTTCG
CCGAGGCCGGCGCCGCGTGCCGGGGATTCGCCCAAGGCACCGGTTCCGCC
GCCGTTCCCATGCTGCTGCCGGCTGCCCGCGCCTTCTCCCGCTGCCCCCC
AAGACGCGCGCGGCGGGGGAGAAGAAGAAGAAGCACCGCTGTTGCCGAAG
AGGTGGTGCTGTGGAAGGAGCGGCTGCGCCCCCTCTCCGCTTTCGCTCTC
CTCTTCTTGCCACCCTTCGCCCCA
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