mRNA_Ecto-sp8_S_contig10214.352.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10214.352.1
Unique NamemRNA_Ecto-sp8_S_contig10214.352.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10214.352.1 vs. uniprot
Match: A0A6H5J6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K8_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 2.230e-102
Identity = 182/195 (93.33%), Postives = 185/195 (94.87%), Query Frame = 1 
Query:  100 SDEDREVVMSPRSTSSAGGEVEGSSVREKIKVFSGRSESAGSADKTGRGSPALPRGRSPYARGLARGWSQADEEEVKARAEQSSANAKEALALMGRSNSSIGKPDNSWVKNEVRGPDTAGGSTNEGGRAVGGDRNLSPAIAGPVPAVPSDPEQLAKKRRAFVKQYSQSGTSDYAEDSDYSVFDSTTAAAAGKSGT 684
            +DED+EVVMSPRSTSSAGGEVEGSSVREKIKVFSGRSES GS DK GRGSPALPRGRSPYARGLARGWSQADEEEVKARAEQSSANAKEALALMG SNSS GKPDNSWVKNEVRGPDTAGGSTNEGGRAVGGDRNLSPAI  PVPAVPSD EQLA KRRAFVKQYSQSGTSDYAEDSDYSVFD+T AAAAGKSGT
Sbjct:  657 ADEDQEVVMSPRSTSSAGGEVEGSSVREKIKVFSGRSESTGSVDKMGRGSPALPRGRSPYARGLARGWSQADEEEVKARAEQSSANAKEALALMGHSNSSTGKPDNSWVKNEVRGPDTAGGSTNEGGRAVGGDRNLSPAITAPVPAVPSDLEQLAIKRRAFVKQYSQSGTSDYAEDSDYSVFDNTAAAAAGKSGT 851
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10214.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J6K8_9PHAE2.230e-10293.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10214contigEcto-sp8_S_contig10214:5711..6929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size951
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006690.1
Cds size936
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.7868443-CDS-Ecto-sp8_S_contig10214:5710..66011681143119.7868443-CDS-Ecto-sp8_S_contig10214:5710..6601Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10214 5711..6601 -
1681143119.796605-CDS-Ecto-sp8_S_contig10214:6869..69141681143119.796605-CDS-Ecto-sp8_S_contig10214:6869..6914Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10214 6870..6914 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.805195-UTR-Ecto-sp8_S_contig10214:6914..69291681143119.805195-UTR-Ecto-sp8_S_contig10214:6914..6929Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10214 6915..6929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10214.352.1prot_Ecto-sp8_S_contig10214.352.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10214 5711..6914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10214.352.1

>prot_Ecto-sp8_S_contig10214.352.1 ID=prot_Ecto-sp8_S_contig10214.352.1|Name=mRNA_Ecto-sp8_S_contig10214.352.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=312bp
MASRAADLAAQAALEAEAEADAEMIANDSDEDREVVMSPRSTSSAGGEVE
GSSVREKIKVFSGRSESAGSADKTGRGSPALPRGRSPYARGLARGWSQAD
EEEVKARAEQSSANAKEALALMGRSNSSIGKPDNSWVKNEVRGPDTAGGS
TNEGGRAVGGDRNLSPAIAGPVPAVPSDPEQLAKKRRAFVKQYSQSGTSD
YAEDSDYSVFDSTTAAAAGKSGTPHGRDKAGGMASGQREQDGKVAEAETK
GTPKRGRPAEDRGRSSERGRAAVKRRSSPGHKTTKGVHAPAGTLAMMASA
SESGSPRADLP*
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mRNA from alignment at Ecto-sp8_S_contig10214:5711..6929-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10214.352.1 ID=mRNA_Ecto-sp8_S_contig10214.352.1|Name=mRNA_Ecto-sp8_S_contig10214.352.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10214:5711..6929- (Ectocarpus species8 EcLAC_412)
CTGGCCGCCGCCGCGATGGCGTCGCGAGCGGCGGATCTCGCAGCACAGGC
GGCGTTGGAGGTGGGTGTTATTTTACATCTGTTTTCATCATTGCCTCTCT
GGCGGCGTGTTAAATAGTTGTTGGGCGAAACGATGATTGGATCATTACAA
CAAGACAGGCCATACTTCTTGTATTTGCCCGTTAGTGTCAACAGTGTTTC
CTGGTATTTGCAACATTTGTTTGCGGAACTTGGAACACTCATTTGTCTCT
CTTTTGTTAACGCGCCGAACGGTACTTGCGGTCGGTCGGTGGGAATACCA
ACTTGCATTCAAAACCACTTGGAGTCAGGCGGAAGCTGAGGCCGACGCGG
AGATGATCGCCAATGACTCCGACGAGGATCGGGAGGTGGTGATGTCTCCG
CGATCAACGTCTTCGGCGGGCGGCGAGGTCGAGGGCTCATCTGTTCGCGA
AAAGATCAAGGTCTTCAGCGGTAGGAGCGAGAGCGCCGGTAGCGCCGATA
AGACGGGCCGGGGCAGCCCTGCCCTTCCTCGGGGAAGGTCGCCGTATGCA
CGAGGCCTTGCTCGGGGCTGGTCCCAGGCCGACGAGGAAGAGGTTAAGGC
TAGGGCGGAGCAGTCCTCGGCTAATGCCAAAGAGGCTCTGGCCTTGATGG
GTCGTTCGAACAGCAGCATTGGCAAACCCGACAATAGTTGGGTCAAGAAT
GAGGTGAGGGGGCCGGACACCGCTGGCGGGAGTACCAACGAGGGCGGTCG
CGCCGTTGGTGGCGACCGAAACCTTTCCCCTGCCATCGCGGGGCCCGTGC
CCGCGGTACCCAGCGACCCGGAGCAGCTCGCCAAAAAGCGGAGGGCGTTC
GTGAAGCAGTACAGCCAGAGCGGCACAAGCGATTATGCTGAGGATTCGGA
TTACTCTGTCTTTGACAGTACTACGGCTGCTGCGGCCGGGAAGTCAGGTA
CCCCTCACGGACGCGATAAGGCTGGGGGCATGGCTTCAGGGCAACGGGAG
CAGGATGGCAAAGTCGCCGAAGCCGAAACGAAAGGAACCCCTAAGCGGGG
ACGCCCAGCCGAAGATCGCGGAAGGAGCTCTGAACGCGGAAGGGCCGCGG
TCAAAAGGCGATCTTCCCCTGGCCACAAAACCACAAAGGGAGTCCATGCG
CCCGCAGGGACGTTGGCGATGATGGCAAGTGCGTCCGAGTCGGGTAGCCC
AAGGGCAGATCTCCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10214:5711..6929-

>mRNA_Ecto-sp8_S_contig10214.352.1 ID=mRNA_Ecto-sp8_S_contig10214.352.1|Name=mRNA_Ecto-sp8_S_contig10214.352.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10214:5711..6929- (Ectocarpus species8 EcLAC_412)
ATGGCGTCGCGAGCGGCGGATCTCGCAGCACAGGCGGCGTTGGAGGCGGA
AGCTGAGGCCGACGCGGAGATGATCGCCAATGACTCCGACGAGGATCGGG
AGGTGGTGATGTCTCCGCGATCAACGTCTTCGGCGGGCGGCGAGGTCGAG
GGCTCATCTGTTCGCGAAAAGATCAAGGTCTTCAGCGGTAGGAGCGAGAG
CGCCGGTAGCGCCGATAAGACGGGCCGGGGCAGCCCTGCCCTTCCTCGGG
GAAGGTCGCCGTATGCACGAGGCCTTGCTCGGGGCTGGTCCCAGGCCGAC
GAGGAAGAGGTTAAGGCTAGGGCGGAGCAGTCCTCGGCTAATGCCAAAGA
GGCTCTGGCCTTGATGGGTCGTTCGAACAGCAGCATTGGCAAACCCGACA
ATAGTTGGGTCAAGAATGAGGTGAGGGGGCCGGACACCGCTGGCGGGAGT
ACCAACGAGGGCGGTCGCGCCGTTGGTGGCGACCGAAACCTTTCCCCTGC
CATCGCGGGGCCCGTGCCCGCGGTACCCAGCGACCCGGAGCAGCTCGCCA
AAAAGCGGAGGGCGTTCGTGAAGCAGTACAGCCAGAGCGGCACAAGCGAT
TATGCTGAGGATTCGGATTACTCTGTCTTTGACAGTACTACGGCTGCTGC
GGCCGGGAAGTCAGGTACCCCTCACGGACGCGATAAGGCTGGGGGCATGG
CTTCAGGGCAACGGGAGCAGGATGGCAAAGTCGCCGAAGCCGAAACGAAA
GGAACCCCTAAGCGGGGACGCCCAGCCGAAGATCGCGGAAGGAGCTCTGA
ACGCGGAAGGGCCGCGGTCAAAAGGCGATCTTCCCCTGGCCACAAAACCA
CAAAGGGAGTCCATGCGCCCGCAGGGACGTTGGCGATGATGGCAAGTGCG
TCCGAGTCGGGTAGCCCAAGGGCAGATCTCCCGTAG
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