mRNA_Ecto-sp8_S_contig102131.349.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102131.349.1
Unique NamemRNA_Ecto-sp8_S_contig102131.349.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: D8LGQ2_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.430e-27
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query:   10 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRG 156
            MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNV+G
Sbjct:    1 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQG 49          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A7S3ZT12_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT12_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.960e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRG 156
            I K+LLE  SDKD  N +GWTPLHEA ++NH+D  + LLV+GA+ T K+ RG
Sbjct:  234 IVKVLLEAGSDKDLVNHLGWTPLHEAAFYNHVDVARTLLVYGANATKKDARG 285          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A1I4DZU2_9RHOB (Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID=195913 RepID=A0A1I4DZU2_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 5.220e-7
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
            +C++LLE  +  DQ      T L  AC  NH++TVQLLL HGADP  +N +G T
Sbjct:  287 LCQVLLEAGASVDQLGDSSHTALMLACEENHVETVQLLLEHGADPHRENAKGRT 340          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A6B2LXD6_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LXD6_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 1.720e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   10 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNV 150
            MLL++ ++ D P+  G T LH AC  N  D V  LL+H ADPTIKNV
Sbjct:    1 MLLKHGANPDIPDKGGNTALHCACRNNFNDVVSSLLLHSADPTIKNV 47          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A519LUW6_9BURK (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Acidovorax sp. TaxID=1872122 RepID=A0A519LUW6_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 3.050e-6
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
            I  +LLEN +  D  +  G TPL  A ++  L++VQLLL  GADPT+KN  G T
Sbjct:   27 IIALLLENHAYIDAASPNGTTPLMMAAHYASLESVQLLLDEGADPTLKNQLGLT 80          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A158Q9G7_ENTVE (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A158Q9G7_ENTVE)

HSP 1 Score: 51.6 bits (122), Expect = 3.500e-6
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRG 156
            +  ML EN +  +  N  G TPLH+A   NH   V+ LL+HGADP+IK+  G
Sbjct:  100 VVSMLCENGASVNALNAKGETPLHDAVRRNHDGVVRNLLLHGADPSIKDANG 151          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: F9W604_TRYCI (WGS project CAEQ00000000 data, annotated contig 140 (Fragment) n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W604_TRYCI)

HSP 1 Score: 50.8 bits (120), Expect = 3.630e-6
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    7 KMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
            ++LL   +D D  N +G TPLH A      +T+  LL+HGADPTI+N RG T
Sbjct:   77 RVLLGVGADIDAVNAVGATPLHCATLCGSCETINELLLHGADPTIRNQRGHT 128          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: F9WIC5_TRYCI (WGS project CAEQ00000000 data, annotated contig 766 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WIC5_TRYCI)

HSP 1 Score: 50.8 bits (120), Expect = 6.490e-6
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    7 KMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
            ++LL   +D D  N +G TPLH A      +T+  LL+HGADPTI+N RG T
Sbjct:   77 RVLLGVGADIDAVNAVGATPLHCATLCGSCETINELLLHGADPTIRNQRGHT 128          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: F9WIC3_TRYCI (WGS project CAEQ00000000 data, annotated contig 766 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WIC3_TRYCI)

HSP 1 Score: 50.8 bits (120), Expect = 6.490e-6
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    7 KMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
            ++LL   +D D  N +G TPLH A      +T+  LL+HGADPTI+N RG T
Sbjct:   77 RVLLGVGADIDAVNAVGATPLHCATLCGSCETINELLLHGADPTIRNQRGHT 128          
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A0Q4RT54_9BURK (Uncharacterized protein n=2 Tax=Acidovorax sp. Leaf78 TaxID=1736237 RepID=A0A0Q4RT54_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 1.200e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
            I  +LLEN +  D  +  G TPL  A ++  L++VQLLL  GADPT+KN  G T
Sbjct:  132 IIALLLENHAYIDAASPNGTTPLMMAAHYASLESVQLLLDEGADPTLKNQLGLT 185          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGQ2_ECTSI3.430e-2797.96U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3ZT12_9STRA1.960e-1257.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1I4DZU2_9RHOB5.220e-748.15Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID... [more]
A0A6B2LXD6_9EUKA1.720e-653.19Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A519LUW6_9BURK3.050e-648.15Ankyrin repeat domain-containing protein (Fragment... [more]
A0A158Q9G7_ENTVE3.500e-646.15Eukaryotic translation initiation factor 3 subunit... [more]
F9W604_TRYCI3.630e-648.08WGS project CAEQ00000000 data, annotated contig 14... [more]
F9WIC5_TRYCI6.490e-648.08WGS project CAEQ00000000 data, annotated contig 76... [more]
F9WIC3_TRYCI6.490e-648.08WGS project CAEQ00000000 data, annotated contig 76... [more]
A0A0Q4RT54_9BURK1.200e-548.15Uncharacterized protein n=2 Tax=Acidovorax sp. Lea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102131contigEcto-sp8_S_contig102131:373..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.6787753-CDS-Ecto-sp8_S_contig102131:372..5251681143119.6787753-CDS-Ecto-sp8_S_contig102131:372..525Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102131 373..525 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.6879103-UTR-Ecto-sp8_S_contig102131:525..5341681143119.6879103-UTR-Ecto-sp8_S_contig102131:525..534Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig102131 526..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102131.349.1prot_Ecto-sp8_S_contig102131.349.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102131 373..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102131.349.1

>prot_Ecto-sp8_S_contig102131.349.1 ID=prot_Ecto-sp8_S_contig102131.349.1|Name=mRNA_Ecto-sp8_S_contig102131.349.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGG
T
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mRNA from alignment at Ecto-sp8_S_contig102131:373..534-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102131.349.1 ID=mRNA_Ecto-sp8_S_contig102131.349.1|Name=mRNA_Ecto-sp8_S_contig102131.349.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102131:373..534- (Ectocarpus species8 EcLAC_412)
ATCTGCAAGATGCTCCTGGAGAACGAGAGCGACAAGGACCAACCGAACGG CATGGGGTGGACTCCGCTCCACGAGGCGTGCTACTTCAACCACCTCGACA CCGTACAGCTGCTCCTGGTGCACGGGGCAGACCCTACGATAAAGAACGTG AGGGGAGGGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102131:373..534-

>mRNA_Ecto-sp8_S_contig102131.349.1 ID=mRNA_Ecto-sp8_S_contig102131.349.1|Name=mRNA_Ecto-sp8_S_contig102131.349.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102131:373..534- (Ectocarpus species8 EcLAC_412)
ATGCTCCTGGAGAACGAGAGCGACAAGGACCAACCGAACGGCATGGGGTG
GACTCCGCTCCACGAGGCGTGCTACTTCAACCACCTCGACACCGTACAGC
TGCTCCTGGTGCACGGGGCAGACCCTACGATAAAGAACGTGAGGGGAGGG
ACC
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