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Homology
BLAST of mRNA_Ecto-sp8_S_contig10213.348.1 vs. uniprot
Match: D7FQU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU4_ECTSI) HSP 1 Score: 876 bits (2263), Expect = 2.990e-313 Identity = 469/486 (96.50%), Postives = 477/486 (98.15%), Query Frame = 3
Query: 243 MPADLAWDDGGEYARAAEAAGVDVGGMLEAGVDAKHLLEFVSNYRKEEGDKLGLLDEQNLKFATSQVLRKGPRAGNQRPRRPPTTATGTSSAWGFGTQGETDEASRRAVDCQSRRTRKRTSPNPEARQSARVGIGNGNTHRTGGRPSAPVVFGEDDGVETARLCSELLRWSSALEGAEKQLGGNGGPDGMESRTGGGIARARHVARAAPAEDAKKEGSEQNTPSRQVDDDENFDSDQEDATHQDRPASTRVEEHRNDRSDTRRSRRQRDEGEGEVSGDRDRHRSHSPEVVDDVIEVWEESEGEPAYSSSRRPGGRVRGSISTYGHARPTPSYALPTKHFKTPDRDRRHALYAEDARGQKQMQRQAQLEEENAALKLRLEGLRRAIHELEHQANTLREDARIREEEFSRLKKKLAATPSSVAGGKCSCCASTHHGRQRAAGENGPSALKKRALAAEGRTETLERCLRESKAKEQRSREIVASLKHSY 1700
MPADLAWDDGGEYARAAEAAGVDVGGMLEAGVDAKHLLEFVSNYRKEEGDKLGLLDEQNLKFATSQVLRKGPRAGNQRPRRPPTTATGTSSAWGFGTQGETDEASRRAVDCQSRRTRKRTSPNPE RQSARVGIGNGNTHRTGGRPSAPV FGEDDGVETARL SELLRWSSALEGAEKQLGGNGGP GMES TGGGIARARHVA+AAPAEDAK+EGSEQ+TPSRQVDDDE+FDSDQEDATH DRPASTRVEE RNDRSDTRRSRRQRDEGEGEVSGDRDRHRSHSPEVVDDV+EVWEESEGEPA SSSRRPGGRVRGSISTYGHARPTPSYALPTKHFKTPDRDRRHA+YAEDARGQKQMQRQA LEEENAALKLRLEGLRRAIHELEHQANTLR+DARIREEEFSRLKKKLAATPSSVAGGKCSCCASTHHGRQ+AAGENGPSALKKRALAAEGRTETLERCLRESKAKEQRSREIVASLKHSY
Sbjct: 1 MPADLAWDDGGEYARAAEAAGVDVGGMLEAGVDAKHLLEFVSNYRKEEGDKLGLLDEQNLKFATSQVLRKGPRAGNQRPRRPPTTATGTSSAWGFGTQGETDEASRRAVDCQSRRTRKRTSPNPEVRQSARVGIGNGNTHRTGGRPSAPVAFGEDDGVETARLRSELLRWSSALEGAEKQLGGNGGPAGMESWTGGGIARARHVAKAAPAEDAKEEGSEQSTPSRQVDDDESFDSDQEDATHHDRPASTRVEERRNDRSDTRRSRRQRDEGEGEVSGDRDRHRSHSPEVVDDVVEVWEESEGEPACSSSRRPGGRVRGSISTYGHARPTPSYALPTKHFKTPDRDRRHAVYAEDARGQKQMQRQAHLEEENAALKLRLEGLRRAIHELEHQANTLRDDARIREEEFSRLKKKLAATPSSVAGGKCSCCASTHHGRQKAAGENGPSALKKRALAAEGRTETLERCLRESKAKEQRSREIVASLKHSY 486
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1700 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_000760.1 |
| Cds size | 1572 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143119.5563335-UTR-Ecto-sp8_S_contig10213:1789..1917 | 1681143119.5563335-UTR-Ecto-sp8_S_contig10213:1789..1917 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig10213 1790..1917 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143119.5680058-CDS-Ecto-sp8_S_contig10213:1917..2015 | 1681143119.5680058-CDS-Ecto-sp8_S_contig10213:1917..2015 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 1918..2015 + |
| 1681143119.5770767-CDS-Ecto-sp8_S_contig10213:2791..2952 | 1681143119.5770767-CDS-Ecto-sp8_S_contig10213:2791..2952 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 2792..2952 + |
| 1681143119.586192-CDS-Ecto-sp8_S_contig10213:3163..3280 | 1681143119.586192-CDS-Ecto-sp8_S_contig10213:3163..3280 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 3164..3280 + |
| 1681143119.5954459-CDS-Ecto-sp8_S_contig10213:3579..3965 | 1681143119.5954459-CDS-Ecto-sp8_S_contig10213:3579..3965 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 3580..3965 + |
| 1681143119.6047194-CDS-Ecto-sp8_S_contig10213:4322..4705 | 1681143119.6047194-CDS-Ecto-sp8_S_contig10213:4322..4705 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 4323..4705 + |
| 1681143119.6136248-CDS-Ecto-sp8_S_contig10213:4914..4975 | 1681143119.6136248-CDS-Ecto-sp8_S_contig10213:4914..4975 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 4915..4975 + |
| 1681143119.6222675-CDS-Ecto-sp8_S_contig10213:5713..5826 | 1681143119.6222675-CDS-Ecto-sp8_S_contig10213:5713..5826 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 5714..5826 + |
| 1681143119.631266-CDS-Ecto-sp8_S_contig10213:6048..6208 | 1681143119.631266-CDS-Ecto-sp8_S_contig10213:6048..6208 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 6049..6208 + |
| 1681143119.6474016-CDS-Ecto-sp8_S_contig10213:6706..6799 | 1681143119.6474016-CDS-Ecto-sp8_S_contig10213:6706..6799 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10213 6707..6799 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10213.348.1 >prot_Ecto-sp8_S_contig10213.348.1 ID=prot_Ecto-sp8_S_contig10213.348.1|Name=mRNA_Ecto-sp8_S_contig10213.348.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=524bp
MTFSEEGEEDSFIVELLNATERHGDGKLQRFDSNRGSAMPADLAWDDGGE YARAAEAAGVDVGGMLEAGVDAKHLLEFVSNYRKEEGDKLGLLDEQNLKF ATSQVLRKGPRAGNQRPRRPPTTATGTSSAWGFGTQGETDEASRRAVDCQ SRRTRKRTSPNPEARQSARVGIGNGNTHRTGGRPSAPVVFGEDDGVETAR LCSELLRWSSALEGAEKQLGGNGGPDGMESRTGGGIARARHVARAAPAED AKKEGSEQNTPSRQVDDDENFDSDQEDATHQDRPASTRVEEHRNDRSDTR RSRRQRDEGEGEVSGDRDRHRSHSPEVVDDVIEVWEESEGEPAYSSSRRP GGRVRGSISTYGHARPTPSYALPTKHFKTPDRDRRHALYAEDARGQKQMQ RQAQLEEENAALKLRLEGLRRAIHELEHQANTLREDARIREEEFSRLKKK LAATPSSVAGGKCSCCASTHHGRQRAAGENGPSALKKRALAAEGRTETLE RCLRESKAKEQRSREIVASLKHSY back to topmRNA from alignment at Ecto-sp8_S_contig10213:1790..6799+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig10213.348.1 ID=mRNA_Ecto-sp8_S_contig10213.348.1|Name=mRNA_Ecto-sp8_S_contig10213.348.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5010bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10213:1790..6799+ (Ectocarpus species8 EcLAC_412) ATTCTAGAGCCAGTGTAGTGCCTGCTGTGGTGTGTTGCCGTGCCGCGTAA
GAGAGGCAACGGTGTCACAAACCGTCCGGATGAGGCTGCGAGTCGTTGCT
AATCTTGTCGTGGGTCGGCGAGATCGAGATGACTTTTTCCGAGGAGGGGG
AGGAGGACTCGTTCATCGTGGAGCTCCTGAATGCAACAGAGAGACACGGC
GATGGGAAGCTCCAACGATTTGACAGGTAGGCAACCCTTGCACTCCGGCA
CCATCGAGTCATCGAGTGTGGAGGGCACTTGTTTGGTGATTCGCTGTGCG
AAGGTGTAGATGTGTGTCGGATTTGGAAAAAATAGTATTATAGCAAAACC
TCTGATACAAAGTTGACGTTTTTGGACGTTGGTAATTCTTTACTCTTGAC
ACAATCCGAGATGCTCAGGGGGCAGGAGAGGCTGCTGTAATGTTTGTAGA
TGGATCTAAGATGGGCATCCAAGCTGCCAGCATGGTGCTGCACACTCGAT
ACAATTTGCACGAAGGAGGCAGTGTCTACACCACTCTGCCGGTATGTTGC
TTGAAGAATCAAGTTTGAGCGGGCATGGGGAAGAGAGCATCATTCTTGCG
CCTGCTGGACACATCCTTTGGAGGTCAGCACGTCCAGTTGACCAAATAGC
ATCCGGCCGGCACATGTCTTGGTCTGGAGCGACCAGCATCTCTGTTTCCG
TGGCGAGCGATGGCCCTGCGGAGAGACCGCCCGATGACATTTTTTGAGAA
GCATCCTTGAACACGAGAGCGACTCGGAAAAGGGAGACAGAAAGGGGAAA
GTTGTCTGTCCCCAGTGAAGGAGTCGGCAACAGTCCGGTTGTACACAAGT
CATGCAGGAGGGGTACACCAACTTGTCCAACCCTCGCCGACAGGCGCGTC
CAGACGCTGGTCCCTTCGCATTCCTACGATGTCAGCGTGGTGCGATGGAC
AACCTCCTTTCCCCTCAAACGCAATCATTTTTTCATTTTCGTTTTCAAGC
AGCAATCGTGGTTCGGCCATGCCGGCTGACTTAGCTTGGGATGACGGAGG
GGAGTATGCTCGTGCAGCGGAGGCTGCAGGTGTGGACGTGGGTGGCATGC
TGGAGGCCGGGGTTGATGCAAAGCACCTCTTGGAATTTGTCTCCAACTAT
CGCAAGGAAGAAGGTGAGATCCGGTAATTATTCTAGCTTCCGCGTGAGGA
ATCTCAAGGTATAGTATGCGAACGTCCGCGTACGAATCGCACGAAGCGTC
GGTTCACGGTTTGACGCCACACAGCAGTCACACACTACACAGTAGTCGCC
ATGACAGCAGTTAACACAAGTCGCGATCAGTCGGTACGTGGGTTTAATGG
TGATTCCCACCGCTCGTGAACCAGGCGACAAGCTTGGCCTGTTGGACGAG
CAGAATCTAAAGTTTGCGACCAGCCAAGTGCTCCGCAAGGGGCCGAGGGC
AGGCAACCAACGTCCACGACGGCCGCCTACTACTGCTACCGGTGAGTCAG
CTATTATCAGCTCTTGGTACACTTTTTCATAGGCCATCGGTATCACTATT
TATGAGGTTTGGCGGGGCCGCGTGGAATCAAGAGAGTCGTGGGTGACGCT
GCTGTCTTCGGGGCCCCTGGGCTCGAACCGGTGCTCTTCCTTCCCTGCGT
TTGATGGTTTGAGGCGGGGTCCTGGTCCGTGACGTCGGTTTATTTCCTTT
TTCACGAATTGTCACTCCTGCTGACCATAAGGAAGTTCAACGTAGGTACA
GTTTATTGTGGATCTGACACTCTCGGCTCTGGCACAACAGGAACTTCGTC
TGCTTGGGGGTTTGGCACTCAAGGGGAAACGGACGAGGCGTCAAGGCGTG
CAGTCGATTGCCAGTCTAGAAGGACTCGGAAAAGAACATCCCCGAACCCG
GAAGCGCGCCAATCGGCGAGGGTTGGGATTGGGAATGGGAATACGCACCG
GACGGGCGGGCGCCCGAGCGCTCCTGTAGTGTTTGGAGAGGACGATGGGG
TGGAAACGGCGAGACTGTGCAGTGAGCTGTTACGCTGGAGTTCTGCCTTA
GAGGGTGCTGAGAAGCAGCTGGGGGGTAATGGCGGGCCCGATGGGATGGA
GAGTCGGACGGGTGGTGGTATTGCACGTGCACGACATGTGGCGAGGGCTG
CGCCTGCCGAGGACGCAAAAAAAGAGGTAAGTTGACAAACCGTGCGAAAC
ATGTGAAGTCGAACAAAATCCGTTGGTGGTACACTGAATTTGACTCGTGG
CAAAGTGATGTAACGAAAAATTGTGTACACTGCTTTGCTTTTGGAGTCAG
TACAGGTGGTGGCGTGTCTCTCTTTGTGATACTGCATCTTGCTCTTGCTC
TATGGAGTGGTTGGCGTGCCCACTAGTTCGCTGGTGTAGTTCGAAGAATA
TAACTTTCATGGGCTACTAACGTGAGTGCAGCATAGTAGTGTCGCAGCCA
CCGCTCTCTGTGATTGTGTTTAGCTTATATGCTGTGGTACCTTGAATTGC
TGCACCTATGAATATGTCTTTGGTGTTCTCCAGGGCTCTGAGCAGAACAC
ACCGTCGAGACAAGTCGACGACGATGAAAACTTTGACAGCGATCAAGAGG
ACGCAACGCATCAAGATAGGCCTGCCTCGACGCGTGTAGAAGAGCATCGG
AACGATAGGAGTGACACGAGACGGTCGCGTCGGCAGCGGGATGAGGGCGA
GGGCGAAGTCAGTGGTGACCGAGATCGGCATCGGAGCCACAGTCCCGAAG
TCGTAGATGACGTGATCGAGGTCTGGGAGGAGAGCGAGGGAGAGCCTGCA
TATTCTTCCTCGCGGCGTCCCGGGGGGCGGGTGCGGGGCAGTATTTCGAC
TTACGGGCATGCCCGACCTACCCCGTCTTACGCTCTGCCGACCAAGCACT
TCAAGACACCCGACAGGTGGGCGTCGAAAGCTGGGAAGGTTGTAGGCAGG
CCCACCCAGACTAGCGTGCCAGCAGTCATCGTTGGGCCCCAGGCAAGCGA
AAAACTCACGCCTCGGTACGAAGTTCACTCCCTTCTTGTTTGCTCGTGCT
TTCTGTAACACAATTGCTGTTGAGAGCAAGAATCGGCCAGAATCGGTTTT
TGATGTTTGCGTCGGGCTCTCACAGGGATCGGAGGCACGCACTGTATGCA
GAGGATGCTCGCGGGCAGAAGCAGATGCAGCGACAGGTGAGAAGTCGCTT
GGAGTGGGGACATTTGCAGCCGTTATCTACTTGATGCATAGGGTTAGGAT
AATACTTTTATTCGTATATTAGATGGGGGTGCTTGACGTTGAAGATGTGT
CTCTTACAGCAGATAGATTTTTGATTCAAAGGCTGGTTATAGCAATAGTG
ATGCAGAACGAGGTTAGGGTCGGTGGGCTCAGTTTCTCATCGCGTTGTCT
TTGTTCTACCCACAACACAGTATTCGATCTTTGCCTCCCTAGCTGTAGAG
CTCCAACCTGGGCGTCGTACCAAATGCGTCCTCGGCTGTGCCTGCTCCAT
TTTTTTCTCGGGCATGGTCCAGCATTTCCTTCCATCAGCGCATGCAAAGG
TACCAAATGCGGAAGATGACTCACACTCGCGGAGATTCAACCTCCGACCT
AGCTGTTTGCATTTTTCAATGTTTTCCACCACCTGGGCGAGCGAGACTAT
GTATCTCGAATCTACCCTCGTTTGCCTATGAGTCTGCCCTGGTGCATGAC
TACAAGTAGTGTTTTATGCAGCATTCGACGGCGTTTGTTGCCCGCAAGCT
TGAGACTCGCCCCTTCATGCCTCCGTTCGTAAGCAGAAGATAGATGCCAG
GTGGTTATACTCCTAACGACTCCCTTCTCGTGCCTCTTGCTGTCTACCTG
TTCGTTGTTTCTTGTTGCGGACCACCACTGTGACTGTGACGCCACTGATC
GGATTAAACTGGACCGCGGAAAAGGCCCAATTGGAAGAGGAAAATGCTGC
CCTTAAGTTACGCTTAGAAGGGCTGAGGAGAGCTATCCATGAGCTGGAAC
ACCAGGCCAACACGCTGCGGGAAGACGCGAGAATACGGTGAGACATGCTC
CTCAAGTACTAGAGTAGTGCAAGAGGTCCCACCACGAAGCTTGCCAGCTG
AAGTGTCCACCCAGGCCATGAATGATGAATGATGCCCCGACAGTGTTGTG
AGACAGTTTCTCCTTATGGGCAACCAGCCTCAACAGCCCAAGGAAGAGTA
ACCTGACGTCACTATCAACACCTGCTCTTATCGCTGGTGTCAATCGTTCG
TGTGAGCAGCGAAGAAGAGTTTTCGCGGCTCAAGAAGAAACTCGCTGCCA
CTCCTTCGTCAGTGGCCGGAGGAAAGTGCTCTTGCTGTGCCAGCACTCAC
CATGGACGCCAGAGGGCCGCTGGAGAAAACGGGCCAAGCGCCCTCAAGAA
ACGGGCCCTTGCTGCGGAGGTGACTACCGTACCGTACCGTACTAAACTAG
ACAAGACAAGACACAATACTAGTCATAATCTGCCCTACTGGGACACCAGG
AATACAGCGGCAACGCGCTGCCACTCGAGAGATAAGCCGGTAGTAGCAAG
TTGGCTCAATTTTTTTGTTCAATTTTTTCGAGATTGACCACAGACTGTGG
TGATGTCTATGGCAACCCCCTCTCGAAACCGTATTTTTTGAAACCGCTTC
TGGTGCATCACAGACGGACTGAAAACGCGAGCGTGTAACGATCGGCCATG
GAGTGGTAATGGACACTGCGTGTTGCCATTCGGTGCGCCATGCTCGGGAA
TGATAGCACATATCACATCTCTGCTGTTGGGTTTTTGGCAGCTTGGGGTT
TGAATTATTTTGGGATAGGACGAATGACGGATCCGGGTCGATTCTACAAA
GTGCAGTTCAACTTCTTGATGATCGAGCCAACGATTTGAACGTGTGATGT
GATCCGAATCTCGCAAGGGGCGGACCGAAACTCTGGAGAGGTGCCTCAGG
GAAAGCAAGGCGAAAGAACAGAGGAGCAGGGAGATCGTGGCATCTCTCAA
GCACAGCTAC back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig10213:1790..6799+ >mRNA_Ecto-sp8_S_contig10213.348.1 ID=mRNA_Ecto-sp8_S_contig10213.348.1|Name=mRNA_Ecto-sp8_S_contig10213.348.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1572bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10213:1790..6799+ (Ectocarpus species8 EcLAC_412) ATGACTTTTTCCGAGGAGGGGGAGGAGGACTCGTTCATCGTGGAGCTCCT GAATGCAACAGAGAGACACGGCGATGGGAAGCTCCAACGATTTGACAGCA ATCGTGGTTCGGCCATGCCGGCTGACTTAGCTTGGGATGACGGAGGGGAG TATGCTCGTGCAGCGGAGGCTGCAGGTGTGGACGTGGGTGGCATGCTGGA GGCCGGGGTTGATGCAAAGCACCTCTTGGAATTTGTCTCCAACTATCGCA AGGAAGAAGGCGACAAGCTTGGCCTGTTGGACGAGCAGAATCTAAAGTTT GCGACCAGCCAAGTGCTCCGCAAGGGGCCGAGGGCAGGCAACCAACGTCC ACGACGGCCGCCTACTACTGCTACCGGAACTTCGTCTGCTTGGGGGTTTG GCACTCAAGGGGAAACGGACGAGGCGTCAAGGCGTGCAGTCGATTGCCAG TCTAGAAGGACTCGGAAAAGAACATCCCCGAACCCGGAAGCGCGCCAATC GGCGAGGGTTGGGATTGGGAATGGGAATACGCACCGGACGGGCGGGCGCC CGAGCGCTCCTGTAGTGTTTGGAGAGGACGATGGGGTGGAAACGGCGAGA CTGTGCAGTGAGCTGTTACGCTGGAGTTCTGCCTTAGAGGGTGCTGAGAA GCAGCTGGGGGGTAATGGCGGGCCCGATGGGATGGAGAGTCGGACGGGTG GTGGTATTGCACGTGCACGACATGTGGCGAGGGCTGCGCCTGCCGAGGAC GCAAAAAAAGAGGGCTCTGAGCAGAACACACCGTCGAGACAAGTCGACGA CGATGAAAACTTTGACAGCGATCAAGAGGACGCAACGCATCAAGATAGGC CTGCCTCGACGCGTGTAGAAGAGCATCGGAACGATAGGAGTGACACGAGA CGGTCGCGTCGGCAGCGGGATGAGGGCGAGGGCGAAGTCAGTGGTGACCG AGATCGGCATCGGAGCCACAGTCCCGAAGTCGTAGATGACGTGATCGAGG TCTGGGAGGAGAGCGAGGGAGAGCCTGCATATTCTTCCTCGCGGCGTCCC GGGGGGCGGGTGCGGGGCAGTATTTCGACTTACGGGCATGCCCGACCTAC CCCGTCTTACGCTCTGCCGACCAAGCACTTCAAGACACCCGACAGGGATC GGAGGCACGCACTGTATGCAGAGGATGCTCGCGGGCAGAAGCAGATGCAG CGACAGGCCCAATTGGAAGAGGAAAATGCTGCCCTTAAGTTACGCTTAGA AGGGCTGAGGAGAGCTATCCATGAGCTGGAACACCAGGCCAACACGCTGC GGGAAGACGCGAGAATACGCGAAGAAGAGTTTTCGCGGCTCAAGAAGAAA CTCGCTGCCACTCCTTCGTCAGTGGCCGGAGGAAAGTGCTCTTGCTGTGC CAGCACTCACCATGGACGCCAGAGGGCCGCTGGAGAAAACGGGCCAAGCG CCCTCAAGAAACGGGCCCTTGCTGCGGAGGGGCGGACCGAAACTCTGGAG AGGTGCCTCAGGGAAAGCAAGGCGAAAGAACAGAGGAGCAGGGAGATCGT GGCATCTCTCAAGCACAGCTAC back to top
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