mRNA_Ecto-sp8_S_contig10208.341.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10208.341.1
Unique NamemRNA_Ecto-sp8_S_contig10208.341.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10208.341.1 vs. uniprot
Match: A0A6H5JQT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT1_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 8.390e-57
Identity = 117/137 (85.40%), Postives = 117/137 (85.40%), Query Frame = 2 
Query:    2 LESAMANRRARPSLLLPAWRAVGFAVGTGATALLPAEASAKVGAAISRAVLEHYDENIRAMYDARIVAEEHEVKELFKAQRDEPSRAALSPGAGAXXXXXXXXXXDSGESADDARSMAVAGTLKSALRAACTVTAKI 412
            LESAMANRRARPSLLLPAWRAVGFAVGTGATALLPAE SAKVGAAISRAVLEHYDENIRAMYDARIV EE EVKELFKAQRDE SR ALS GAG      XXXXX        ARSMAVAGTLKSALRAACTVTAKI
Sbjct:   79 LESAMANRRARPSLLLPAWRAVGFAVGTGATALLPAETSAKVGAAISRAVLEHYDENIRAMYDARIVNEEQEVKELFKAQRDELSRVALSSGAGPGAGGTXXXXXXXXXXXXXARSMAVAGTLKSALRAACTVTAKI 215
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BLAST of mRNA_Ecto-sp8_S_contig10208.341.1 vs. uniprot
Match: D7FX83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX83_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.300e-33
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 2 
Query:   14 MANRRARPSLLLPAWRAVGFAVGTGATALLPAEASAKVGAAISRAVLEHYDENIRAMYDARIVAEEHEVK 223
            MANRRARPSLLLPAWRAVGFAVGTGATALLPA+ASAKVGAAISRAVLEHYDENIRAMYDARIVAEEHE +
Sbjct:    1 MANRRARPSLLLPAWRAVGFAVGTGATALLPADASAKVGAAISRAVLEHYDENIRAMYDARIVAEEHEAR 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10208.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQT1_9PHAE8.390e-5785.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX83_ECTSI1.300e-3395.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10208contigEcto-sp8_S_contig10208:1355..3101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size994
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionUbiquinone biosynthesis protein Coq7
Ec32 orthologEc-26_003900.1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.9568348-UTR-Ecto-sp8_S_contig10208:1354..13671681143118.9568348-UTR-Ecto-sp8_S_contig10208:1354..1367Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10208 1355..1367 +
1681143118.9870396-UTR-Ecto-sp8_S_contig10208:2522..31011681143118.9870396-UTR-Ecto-sp8_S_contig10208:2522..3101Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10208 2523..3101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.9674203-CDS-Ecto-sp8_S_contig10208:1367..15711681143118.9674203-CDS-Ecto-sp8_S_contig10208:1367..1571Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10208 1368..1571 +
1681143118.9776456-CDS-Ecto-sp8_S_contig10208:2324..25221681143118.9776456-CDS-Ecto-sp8_S_contig10208:2324..2522Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10208 2325..2522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10208.341.1prot_Ecto-sp8_S_contig10208.341.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10208 1368..2522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10208.341.1

>prot_Ecto-sp8_S_contig10208.341.1 ID=prot_Ecto-sp8_S_contig10208.341.1|Name=mRNA_Ecto-sp8_S_contig10208.341.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=134bp
MANRRARPSLLLPAWRAVGFAVGTGATALLPAEASAKVGAAISRAVLEHY
DENIRAMYDARIVAEEHEVKELFKAQRDEPSRAALSPGAGAGAGGADDDA
DDSGESADDARSMAVAGTLKSALRAACTVTAKI*
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mRNA from alignment at Ecto-sp8_S_contig10208:1355..3101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10208.341.1 ID=mRNA_Ecto-sp8_S_contig10208.341.1|Name=mRNA_Ecto-sp8_S_contig10208.341.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1747bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10208:1355..3101+ (Ectocarpus species8 EcLAC_412)
GCTCGAGTCCGCGATGGCGAATCGACGAGCGAGGCCGAGCCTCCTCCTGC
CCGCCTGGCGGGCCGTTGGCTTCGCGGTGGGGACGGGAGCGACGGCCCTA
CTGCCGGCGGAGGCGTCGGCTAAGGTCGGGGCCGCCATCAGCCGAGCGGT
GTTGGAGCACTACGACGAGAATATCCGCGCCATGTACGACGCCAGGATAG
TCGCCGAGGAGCACGAGGTGAGAACATAACGGGTGGTTGTGCCGCGCCGT
TGCGGGTAAGGTGGTGGGAGAGAGACGAAGGTCAGGGGGGGGAGGGGGGC
GTACTCTTATGTTTTGCGTGCCTTAGCGGTTAGACCATTGACCATGCGTC
CTCGAGAGGACGGAGCATTGTTCCCACAGGACTGATCACCGATGGCCAAT
CGTTCCTTCCTACTTTGCCAAAGGTGGCTTTAAAATGTCTTCCCTAGTCT
ATCTATCCCAACGACATCATTTCTACCGATATCACTTCCCGCCGTTTCAA
CCCACTTCCTATGCCCCAGTATAGCTAACGTCTTCTCCTGGGTCAGGGGG
CGGGGGGGTACTCATAGCCGTGCATGCCGTGGTCGTTAGACCATTTTCCT
CAGGGAGGGGTCGGGATCGTTCATGGGTGTGGGATGTTCTTCTAACGGTA
AATAGTGTGGGATTGATCTAGAACTACTGCTGTAGCAGCGTTGTTGCTGG
GTCGTCGATTGTTTTGGTAATAATGGCCGGACAAAGCTCTTCTTACTATT
TTCGGGGGGCGATTCACAAGACTACTGCTGTGCCCGACAACAACACTAGA
TGCGAGAGCCGCTACATAGGCGGGTGGTCTGTTTCTGTCCCTTGTGTGGC
AAATCACCCTGTACCGAGCGAGGCTAGTAAGAAAACGTTCAACCCAAGCT
ATCGCGCTATAAACTGAATGATTTCCTTCTTTGAACGCGTGCCATCCACA
TTCACGACGTACCTCCTCAGGTGAAGGAGTTGTTCAAAGCTCAGAGGGAC
GAGCCGTCGCGCGCGGCACTATCACCCGGTGCTGGCGCTGGTGCTGGTGG
CGCGGATGATGATGCAGATGATTCCGGGGAGAGCGCCGACGACGCCCGAT
CAATGGCTGTCGCTGGCACGCTAAAGTCGGCGCTTCGTGCGGCGTGTACC
GTGACCGCAAAGATTTGATGTAGAAACGTATATCAAATAGTTAACGCGGA
ATATTGAGTAGGATTTGTTCACAGTTTTATGGGCCAACCCTTGTTTTGTG
TGAGACCAGAGTCTGGAGCAGTCTTGTCAAATATTTTTCAGACACCAGTG
CTCATCTAATGTTGTGCTCACTGTAGGGATGGTCGGTGCAAACGGCCGTT
TTTTCGGACATTGTCGTAGGAATTCGTGTTTGGCGGCAATATGAGGAAGC
TGAGTAAGGACTGGCCGCTGACCTGGATATCATTTCGTTCGTGGTCATGG
ATACTACACAAAGGTGGGCATGCTCGTCCGATCACCAGAGAGCACTAAAC
TCTGTCAAGTCGTGGGTGTGAATGGGACATGGGTGCTATTCACGCTCCAA
GACTGAGGGTGTCCACGGCTCTGCGGTGGTCGGACAAGCATGCCCACCTT
TTGCTTAATTTCCATGCTGCTTCGATGCGGAGCAGCGCTGTGCGAGCCCT
CTCCTAGCACTAACGAACCGACAGGTCAGGTTTACTTGAGAGAGAAGGCA
AAGCGATCCTCGCAACTTGCTGGCGTACGCCGTGCTGCAGGCGCCGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10208:1355..3101+

>mRNA_Ecto-sp8_S_contig10208.341.1 ID=mRNA_Ecto-sp8_S_contig10208.341.1|Name=mRNA_Ecto-sp8_S_contig10208.341.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10208:1355..3101+ (Ectocarpus species8 EcLAC_412)
ATGGCGAATCGACGAGCGAGGCCGAGCCTCCTCCTGCCCGCCTGGCGGGC
CGTTGGCTTCGCGGTGGGGACGGGAGCGACGGCCCTACTGCCGGCGGAGG
CGTCGGCTAAGGTCGGGGCCGCCATCAGCCGAGCGGTGTTGGAGCACTAC
GACGAGAATATCCGCGCCATGTACGACGCCAGGATAGTCGCCGAGGAGCA
CGAGGTGAAGGAGTTGTTCAAAGCTCAGAGGGACGAGCCGTCGCGCGCGG
CACTATCACCCGGTGCTGGCGCTGGTGCTGGTGGCGCGGATGATGATGCA
GATGATTCCGGGGAGAGCGCCGACGACGCCCGATCAATGGCTGTCGCTGG
CACGCTAAAGTCGGCGCTTCGTGCGGCGTGTACCGTGACCGCAAAGATTT
GA
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