mRNA_Ecto-sp8_S_contig10208.340.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10208.340.1
Unique NamemRNA_Ecto-sp8_S_contig10208.340.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10208.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10208contigEcto-sp8_S_contig10208:247..1281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1035
Hectar predicted targeting categorysignal peptide
Exons1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.9075243-UTR-Ecto-sp8_S_contig10208:246..3691681143118.9075243-UTR-Ecto-sp8_S_contig10208:246..369Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10208 247..369 +
1681143118.9276278-UTR-Ecto-sp8_S_contig10208:1098..12811681143118.9276278-UTR-Ecto-sp8_S_contig10208:1098..1281Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10208 1099..1281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.9177275-CDS-Ecto-sp8_S_contig10208:369..10981681143118.9177275-CDS-Ecto-sp8_S_contig10208:369..1098Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10208 370..1098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10208.340.1prot_Ecto-sp8_S_contig10208.340.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10208 370..1098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10208.340.1

>prot_Ecto-sp8_S_contig10208.340.1 ID=prot_Ecto-sp8_S_contig10208.340.1|Name=mRNA_Ecto-sp8_S_contig10208.340.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=243bp
MFLAASTVALCGIQRFLFFAMPSDWSSCVSVVQFLVLLRMFSKLVNIELA
VLGAVNLGWGPLIWVETRHGTQESAPAAVLRVKSVWGRGGAVDYSAKTIV
VYTAVPCREGSSTQPTHISENNPLFGRPNFDFEHTKSSRSVALRPPVAGF
STRGAPPTYQHQQARGIWFGCSWLWAAIWRGPTNPDNSGETILANGSNQP
RKHSRWSPTREQEEHRPQQLGREGANGGGHPSGPRVLRCATK*
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mRNA from alignment at Ecto-sp8_S_contig10208:247..1281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10208.340.1 ID=mRNA_Ecto-sp8_S_contig10208.340.1|Name=mRNA_Ecto-sp8_S_contig10208.340.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1035bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10208:247..1281+ (Ectocarpus species8 EcLAC_412)
GGCATGTCAACACAGACCTTATTTGAACGCCTGCCGTTTTGGCTCTTTTG
ACTTGAAATTAGAATAGGGCGATTTTTTATCTTGATTTCAAAGGGGGCGT
GCGGAGGTAGACGCGTGAAACGTATGTTTTTAGCAGCCTCCACTGTCGCC
CTGTGCGGGATTCAACGATTTCTGTTTTTTGCGATGCCTTCCGACTGGTC
TTCTTGTGTGTCTGTTGTACAGTTTCTGGTGCTCTTGCGTATGTTTTCAA
AATTAGTCAACATCGAACTTGCTGTTCTGGGGGCCGTTAATCTGGGTTGG
GGGCCGTTAATCTGGGTCGAAACTCGTCACGGCACGCAGGAAAGTGCACC
AGCTGCAGTATTACGCGTCAAATCCGTTTGGGGGAGAGGGGGGGCTGTAG
ACTACTCTGCAAAGACTATTGTTGTTTATACAGCAGTACCCTGCAGGGAG
GGCTCGAGCACCCAACCTACCCACATCTCCGAGAACAACCCGCTTTTTGG
CCGGCCAAACTTCGACTTCGAACACACAAAATCATCGCGATCGGTTGCTT
TGAGGCCGCCTGTTGCTGGCTTCTCGACACGCGGCGCCCCTCCTACATAC
CAACATCAGCAGGCTCGAGGGATTTGGTTCGGATGCAGTTGGTTGTGGGC
GGCAATCTGGAGGGGTCCCACAAACCCAGACAACAGCGGGGAAACAATAC
TGGCAAACGGCAGCAACCAACCGCGGAAACACAGCAGATGGAGCCCAACA
CGAGAACAAGAAGAACACAGACCCCAACAACTAGGACGCGAGGGAGCGAA
CGGCGGGGGGCACCCATCGGGTCCCCGCGTTTTACGTTGTGCTACTAAAT
AAACGCCCTTTCGGACACAAGGCTGTCCTCATGACGTTCCACCCCACGTC
TCCCAACCATTTCGTTTCGTCCCACCCCTGCTTCCAATCCCCCCCCCCGC
TCCGCTTTTGAAAACATTTTTGAGCCACGTTTTTTAGGCAAAGCAGGAAG
GAACGATTGGCCATCCGTACAATGCTCCGTCCGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10208:247..1281+

>mRNA_Ecto-sp8_S_contig10208.340.1 ID=mRNA_Ecto-sp8_S_contig10208.340.1|Name=mRNA_Ecto-sp8_S_contig10208.340.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10208:247..1281+ (Ectocarpus species8 EcLAC_412)
ATGTTTTTAGCAGCCTCCACTGTCGCCCTGTGCGGGATTCAACGATTTCT
GTTTTTTGCGATGCCTTCCGACTGGTCTTCTTGTGTGTCTGTTGTACAGT
TTCTGGTGCTCTTGCGTATGTTTTCAAAATTAGTCAACATCGAACTTGCT
GTTCTGGGGGCCGTTAATCTGGGTTGGGGGCCGTTAATCTGGGTCGAAAC
TCGTCACGGCACGCAGGAAAGTGCACCAGCTGCAGTATTACGCGTCAAAT
CCGTTTGGGGGAGAGGGGGGGCTGTAGACTACTCTGCAAAGACTATTGTT
GTTTATACAGCAGTACCCTGCAGGGAGGGCTCGAGCACCCAACCTACCCA
CATCTCCGAGAACAACCCGCTTTTTGGCCGGCCAAACTTCGACTTCGAAC
ACACAAAATCATCGCGATCGGTTGCTTTGAGGCCGCCTGTTGCTGGCTTC
TCGACACGCGGCGCCCCTCCTACATACCAACATCAGCAGGCTCGAGGGAT
TTGGTTCGGATGCAGTTGGTTGTGGGCGGCAATCTGGAGGGGTCCCACAA
ACCCAGACAACAGCGGGGAAACAATACTGGCAAACGGCAGCAACCAACCG
CGGAAACACAGCAGATGGAGCCCAACACGAGAACAAGAAGAACACAGACC
CCAACAACTAGGACGCGAGGGAGCGAACGGCGGGGGGCACCCATCGGGTC
CCCGCGTTTTACGTTGTGCTACTAAATAA
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