mRNA_Ecto-sp8_S_contig10207.338.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10207.338.1
Unique NamemRNA_Ecto-sp8_S_contig10207.338.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10207.338.1 vs. uniprot
Match: D8LM71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM71_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 3.240e-154
Identity = 257/273 (94.14%), Postives = 259/273 (94.87%), Query Frame = 1 
Query:    1 MSRCESPLWAIETVEEQHTAGGAPRSLWDRIESHLRPQENQNKQTWQKIAARPTMAPGLERTLLEAHLRLLLGKLGVPSGNQGGRGGLASMSPSSXXXXXXXXXXXXXVGRPRPHTFREDDLCRRSSTRSCCATTAGNPGEDSSPRRKCLNGRKASXXXXXXXXXXXXXXXXXXAPTTTYVPLETQQDRAVYEFLSTSGECDGLSGGAAGRGGNRTHGEAERGGSEGAAVGNSRSRPGTGRRPGSSRSARSAPECLESGRCVTVATIDTALGE 819
            MSRCESPLWAIETVEEQHTAGGAPRSLWDRIESHLRPQENQNKQTWQKIAARPTMAPGLERTLLEAHLRLLLGKLGVPSGNQGG+GGLASMSPSSXXXXXXXXXXXXXVGRPRPHTFREDDLCRRSSTR CCATTAG+PGEDSSPRRKCLNGRKAS   XXXXXXXX        PTT YVPLETQQDRAVYEFLSTSGECDGLSGGAAGRGGN THGEAERGGSEGAAVGNSRSRPGTGRRPGSSRSARSAPECLESGRCVTVATIDTALGE
Sbjct:    1 MSRCESPLWAIETVEEQHTAGGAPRSLWDRIESHLRPQENQNKQTWQKIAARPTMAPGLERTLLEAHLRLLLGKLGVPSGNQGGKGGLASMSPSSXXXXXXXXXXXXXVGRPRPHTFREDDLCRRSSTRPCCATTAGSPGEDSSPRRKCLNGRKASYARXXXXXXXXCSE-----PTTPYVPLETQQDRAVYEFLSTSGECDGLSGGAAGRGGNGTHGEAERGGSEGAAVGNSRSRPGTGRRPGSSRSARSAPECLESGRCVTVATIDTALGE 268
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10207.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM71_ECTSI3.240e-15494.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10207contigEcto-sp8_S_contig10207:2..2312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size819
Hectar predicted targeting categoryother localisation
Exons4
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.8323333-CDS-Ecto-sp8_S_contig10207:1..711681143118.8323333-CDS-Ecto-sp8_S_contig10207:1..71Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 2..71 -
1681143118.8410926-CDS-Ecto-sp8_S_contig10207:464..8031681143118.8410926-CDS-Ecto-sp8_S_contig10207:464..803Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 465..803 -
1681143118.8497777-CDS-Ecto-sp8_S_contig10207:1131..14241681143118.8497777-CDS-Ecto-sp8_S_contig10207:1131..1424Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 1132..1424 -
1681143118.8585484-CDS-Ecto-sp8_S_contig10207:2195..23121681143118.8585484-CDS-Ecto-sp8_S_contig10207:2195..2312Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 2196..2312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10207.338.1prot_Ecto-sp8_S_contig10207.338.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10207 2..2312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10207.338.1

>prot_Ecto-sp8_S_contig10207.338.1 ID=prot_Ecto-sp8_S_contig10207.338.1|Name=mRNA_Ecto-sp8_S_contig10207.338.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=273bp
MSRCESPLWAIETVEEQHTAGGAPRSLWDRIESHLRPQENQNKQTWQKIA
ARPTMAPGLERTLLEAHLRLLLGKLGVPSGNQGGRGGLASMSPSSSGGGG
GSGCGSASVGRPRPHTFREDDLCRRSSTRSCCATTAGNPGEDSSPRRKCL
NGRKASYARRSSSSSSSSSSSSCSAPTTTYVPLETQQDRAVYEFLSTSGE
CDGLSGGAAGRGGNRTHGEAERGGSEGAAVGNSRSRPGTGRRPGSSRSAR
SAPECLESGRCVTVATIDTALGE
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mRNA from alignment at Ecto-sp8_S_contig10207:2..2312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10207.338.1 ID=mRNA_Ecto-sp8_S_contig10207.338.1|Name=mRNA_Ecto-sp8_S_contig10207.338.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2311bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10207:2..2312- (Ectocarpus species8 EcLAC_412)
ATGAGTCGTTGCGAGTCCCCTTTGTGGGCAATCGAAACTGTCGAGGAGCA
GCATACAGCCGGCGGCGCGCCCCGGTCGCTATGGGATCGTATAGAGTCCC
ACCTTCGTCCGCAAGAGGTAAGAACGTATACGCATGATCATCGTCATGGG
AGCGCCCGAGTGTTACGTTCTTCGGTGATTGTCACACCGCTGCAGCTCTC
GTGCGGTGTGGACTGTTGCAATTCCGCTGCATGGTCACACATATCGGACC
TACAGTACTCCCACAGCTAGGCGGAGAGGACTCCAGTCGATAGACGTCAA
CAAGTTGTGACCCGAAAAATGAGCACGCACTCAAAACATTAGATAGAGAG
GATGGAGGGATGTTATGTAGGAACCACGAGTAAATTGCTCTTTGCTCTTC
CGGCCACGAACATCGCCGTGTCAAAACACACACCAAGCGAATGACGCACC
CACGCGAGCGGCAGGTGTTCACCATCCGTCGAACAATCGGCGAGAGCGCG
TTGGACCGCAATGAGGGTCTGTGGAGAGAGGTCGATGCCTTGGAAGACAT
ACTAGCGGAAGCTCAGGCAAGATACGGCTAATGTATATTGTAGCCGTTGC
CCACAATAAGCATCGGACAGAGTATCATTCTCACAGCATGCATGCATAGA
CATATCACATCCGTGTACACGGCGGAAGTACATACCAGAGGTAGGTGTCG
CCGTTCGTTGTTCGGTTGAAGGGTAAGATGCACCGTATATTCTTCTCTAG
ATCTTGCAGTATAGCACCCCTGCAGTGTTCTGTATCCGACGCCTGCTAAA
TAGACACATAGCTCGGGTCCTCTCAGACACCATACTCCCTTTGCCACAGC
ACCCATCATTATGCATGTTCTCTCCCATGTGTTGCCAGAATCAGAACAAG
CAGACGTGGCAGAAGATTGCGGCGCGACCGACCATGGCGCCGGGTCTCGA
GAGAACCCTTCTAGAAGCTCACCTACGACTGTTGCTCGGGAAGCTAGGGG
TGCCGAGCGGGAACCAGGGTGGAAGGGGGGGGCTGGCCTCGATGTCACCT
AGCAGCAGCGGGGGCGGGGGTGGCAGCGGGTGCGGATCAGCTTCGGTTGG
ACGACCTCGACCGCACACATTCCGAGAGGACGACCTCTGTAGGCGCAGCT
CCACCAGGTCGTGCTGTGCCACTACAGCAGGGTGCGTTTCGTGTCCTTGT
GTACGACTGGTGCCTGCTCTTACTAGCACTCGGGCGTGTGCATGACGGAT
GCACTTATCGAGAGAGCGGTCCTCTTCAGGCTCTCTCCCTGCAAACAAGG
GGTCTGGTGGCGTCTTCCGCCGGTTGGTGTGGGATCGCCCGGCCAGCGGC
TCTAGCCCGGGCCCCTGCCCCACCGCGGCATCCGACGAGTTTTGACAGAG
GTGTACGCCCGATGAACGTTTCATTTCTCTTGATGTTGACTCGCGAGAGA
CAACAACTTGATCGCTCGCTGTCTCTGTGTCGGTATCCGCGTTGCGCCAC
TCTCTGCAGCAATCCAGGGGAGGATTCTTCGCCGCGGCGGAAATGTCTGA
ACGGCCGAAAAGCCAGCTACGCGAGAAGAAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCTGCAGTGCACCCACTACAACTTACGTGCCCCTCGA
GACTCAGCAAGACCGAGCCGTGTACGAATTCCTCTCCACAAGTGGTGAGT
GCGACGGCCTCAGCGGTGGTGCTGCCGGGAGGGGCGGGAACAGGACGCAC
GGGGAGGCGGAGCGCGGAGGTTCGGAGGGAGCGGCGGTGGGAAATAGTAG
ATCGAGACCGGGGACGGGCAGAAGACCGGGCAGTTCTCGTTCGGCAAGGT
AAATGTGTCAACTGCAGCAGCAGTATCTTTGACGTGACGTCACATTTATT
TTGCTGGGTGTCCATGGTCTGCTAAACGGGGCCATGTTGCACTACGTAGG
ATACTTGGCTCTGTCCTCCTCTCCCTCCCCCCCGTGAACTCTCCCTCTAC
TCTGTCGCACTGTGGGTCAACTCTTGCACTCCACTCGAATCATCTTGCGA
GTTTGCAGGCCCTGCCCATTGTGCCCTCGTCGTGGGTGCACGTGCGCCAT
GCGCTCGCATAGTTAACAGTTGTGGTCCTCCTCCGCCGTCGACCAATGCC
AAAACAGCCCATCTACCGTAAGCTCTACCTAGCAGCCGTCCAGGTACCAC
TGCATGCAGCTGACTGTTTCTCTTGTTGCAAAAATCATTAGGTCGGCCCC
CGAGTGTCTCGAGTCGGGGCGATGCGTCACGGTGGCCACGATAGACACCG
CCCTGGGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10207:2..2312-

>mRNA_Ecto-sp8_S_contig10207.338.1 ID=mRNA_Ecto-sp8_S_contig10207.338.1|Name=mRNA_Ecto-sp8_S_contig10207.338.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10207:2..2312- (Ectocarpus species8 EcLAC_412)
ATGAGTCGTTGCGAGTCCCCTTTGTGGGCAATCGAAACTGTCGAGGAGCA
GCATACAGCCGGCGGCGCGCCCCGGTCGCTATGGGATCGTATAGAGTCCC
ACCTTCGTCCGCAAGAGAATCAGAACAAGCAGACGTGGCAGAAGATTGCG
GCGCGACCGACCATGGCGCCGGGTCTCGAGAGAACCCTTCTAGAAGCTCA
CCTACGACTGTTGCTCGGGAAGCTAGGGGTGCCGAGCGGGAACCAGGGTG
GAAGGGGGGGGCTGGCCTCGATGTCACCTAGCAGCAGCGGGGGCGGGGGT
GGCAGCGGGTGCGGATCAGCTTCGGTTGGACGACCTCGACCGCACACATT
CCGAGAGGACGACCTCTGTAGGCGCAGCTCCACCAGGTCGTGCTGTGCCA
CTACAGCAGGCAATCCAGGGGAGGATTCTTCGCCGCGGCGGAAATGTCTG
AACGGCCGAAAAGCCAGCTACGCGAGAAGAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCTGCAGTGCACCCACTACAACTTACGTGCCCCTCG
AGACTCAGCAAGACCGAGCCGTGTACGAATTCCTCTCCACAAGTGGTGAG
TGCGACGGCCTCAGCGGTGGTGCTGCCGGGAGGGGCGGGAACAGGACGCA
CGGGGAGGCGGAGCGCGGAGGTTCGGAGGGAGCGGCGGTGGGAAATAGTA
GATCGAGACCGGGGACGGGCAGAAGACCGGGCAGTTCTCGTTCGGCAAGG
TCGGCCCCCGAGTGTCTCGAGTCGGGGCGATGCGTCACGGTGGCCACGAT
AGACACCGCCCTGGGGGAA
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