mRNA_Ecto-sp8_S_contig10203.333.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10203.333.1
Unique NamemRNA_Ecto-sp8_S_contig10203.333.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 6.160e-75
Identity = 171/177 (96.61%), Postives = 173/177 (97.74%), Query Frame = 1 
Query:    1 MVIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDRVVEALQHRPQTTVVFGDAGDYSRRRLEDSSTSSADR 531
            MVIARSLKDAARLGS TTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKL+ELDVAENDLGVLPE VFELPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDRVVEALQHRPQTTVVFGDAGDYSRRR ED+STSSADR
Sbjct:    1 MVIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDRVVEALQHRPQTTVVFGDAGDYSRRRQEDASTSSADR 177
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.030e-20
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    4 VIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPAL 237
            +IA+SL+DAA   S    L+LR+S+DLVC+NLMC ++GEACVC+L++ L RL +L ELDV+EN L +LP ++F+L  L
Sbjct:    1 MIAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQLSKL 78
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV)

HSP 1 Score: 87.0 bits (214), Expect = 1.560e-18
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    4 VIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFEL 228
            +IA+SL+DAA   S    L+LR+SEDL+C NLMC ++GEACVC+L+V L RL +L  LDV+ N+L  LP A+F L
Sbjct:    1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSL 75
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A1V9Z9Y8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9Y8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-17
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    4 VIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFEL 228
            +IA+SL++AA   +    LLLR+SEDLVC+NLMC ++GEACVC+L++ L RL +L  LDV+ N LG LP AV  L
Sbjct:    1 MIAKSLREAATHTTAVRKLLLRKSEDLVCRNLMCERVGEACVCKLSLVLERLPELTHLDVSGNKLGALPPAVAAL 75
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A485L6B7_9STRA (Aste57867_16664 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.950e-17
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    4 VIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPAL 237
            +I RS++DAA        LLLRRSEDL+C+NLMC ++GEAC+CR ++ L +L +L +LDV+ N+L  LP A+F+LP L
Sbjct:  332 MIVRSVRDAAMHMGAVKELLLRRSEDLLCRNLMCERVGEACICRFSLVLEKLPQLTKLDVSHNNLHALPPALFQLPRL 409
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A067CF62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CF62_SAPPC)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-16
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    4 VIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFEL 228
            +IA+SL+DAA   S    L+LR+SEDL+C NLMC ++GEACVC+L+V L RL +L  LDV+ N+L  LP A+F L
Sbjct:  382 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIFSL 456
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A024GQG6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQG6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.300e-16
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    7 IARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPAL 237
            +A S + AA+ G+ T  L+L +S+DLVC+NLMC +IG AC CRLA  L+ + KL  LD++ N+L  +P+AVF L  L
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSLQDL 81
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A484E5V5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5V5_BRELC)

HSP 1 Score: 80.9 bits (198), Expect = 4.570e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    7 IARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPAL 237
            IA  L+D AR GS  T L L +S DLVC+ LMC  +G+AC CRLA+ L R+  LR LD++ N L +LP+AV+ L +L
Sbjct:    6 IATCLRDVARHGSCITELQLSKSSDLVCRQLMCEHVGDACSCRLALALERVPHLRHLDLSRNQLRMLPDAVYALQSL 82
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: F0WI42_9STRA (Uncharacterized protein AlNc14C107G6249 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI42_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.390e-16
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    7 IARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPAL 237
            +A S +D A+ G+    L+L++S+DLVC+NLMC KIG AC CRLA  L+ + KL  LD++ N L  +PEAVF L  L
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGLQDL 81
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BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Match: A0A0P1ANY0_PLAHL (FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANY0_PLAHL)

HSP 1 Score: 80.5 bits (197), Expect = 7.210e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    4 VIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEAVFELPAL 237
            VIA SL+D ARLGS    L L  S DLVC  LMC  +G+AC CRLA+ L R+  L+ LD+++N L  LP+A+F L +L
Sbjct:   10 VIATSLRDIARLGSCVLELNLSNSNDLVCHQLMCEHLGDACSCRLALALERVPCLQRLDLSKNQLRALPDALFALQSL 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10203.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMZ4_ECTSI6.160e-7596.61Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A1V9ZV51_9STRA9.030e-2055.13Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0QH27_SAPDV1.560e-1856.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9Z9Y8_9STRA1.020e-1756.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485L6B7_9STRA4.950e-1752.56Aste57867_16664 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CF62_SAPPC1.380e-1656.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024GQG6_9STRA4.300e-1649.35Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A484E5V5_BRELC4.570e-1651.95Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0WI42_9STRA6.390e-1650.65Uncharacterized protein AlNc14C107G6249 n=1 Tax=Al... [more]
A0A0P1ANY0_PLAHL7.210e-1652.56FOG: Toll/interleukin receptor and related protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10203contigEcto-sp8_S_contig10203:4683..5695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score231.9
Seed ortholog evalue2.4e-58
Seed eggNOG ortholog2880.D8LMZ4
Model size534
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size534
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.552268-CDS-Ecto-sp8_S_contig10203:4682..49381681143118.552268-CDS-Ecto-sp8_S_contig10203:4682..4938Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10203 4683..4938 +
1681143118.5635273-CDS-Ecto-sp8_S_contig10203:5417..56951681143118.5635273-CDS-Ecto-sp8_S_contig10203:5417..5695Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10203 5418..5695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10203.333.1prot_Ecto-sp8_S_contig10203.333.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10203 4683..5695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10203.333.1

>prot_Ecto-sp8_S_contig10203.333.1 ID=prot_Ecto-sp8_S_contig10203.333.1|Name=mRNA_Ecto-sp8_S_contig10203.333.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=178bp
MVIARSLKDAARLGSVTTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHL
SRLGKLRELDVAENDLGVLPEAVFELPALEHLDVSGNGLKDLPASVAALS
SLRTLRLSDNALTALPKELALLPLLTEVHVDGNSGLGSSDRVVEALQHRP
QTTVVFGDAGDYSRRRLEDSSTSSADR*
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mRNA from alignment at Ecto-sp8_S_contig10203:4683..5695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10203.333.1 ID=mRNA_Ecto-sp8_S_contig10203.333.1|Name=mRNA_Ecto-sp8_S_contig10203.333.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1013bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10203:4683..5695+ (Ectocarpus species8 EcLAC_412)
ATGGTTATCGCGCGGAGTCTCAAGGACGCGGCGCGGCTAGGGAGCGTGAC
GACCTCTCTGTTGCTGAGGAGGAGCGAGGACCTGGTATGCCAGAACCTCA
TGTGCGCCAAGATAGGCGAGGCTTGCGTCTGTCGGCTGGCCGTCCACTTG
TCCCGGCTGGGGAAGCTGAGGGAGCTCGACGTTGCTGAGAACGACCTCGG
CGTCCTGCCTGAAGCAGTGTTCGAGTTGCCGGCCTTGGAGCATCTGGACG
TCAGTGGTGCGTGCTGATTTTTGCCTTGAGTGTTGGCGATGTTGATGGTG
CATGGGCATGTGTTGTTGGCGTGCATCTCCCAGACCTGCAACATGCTTTC
TCTGATGTTTTCTACTGCTGTCGCAACAGCGAGCCCCACACGAGAGTGCA
GAGTTGAAGGAGTGTGTCCGCCCCTCTGCGGAAATTAACCATCCGTCATA
AGACTTTCCGGCGGACTAATGCAAACCGGCTGGGTATTTCCATCCACTGG
ATTATCCGCTGACGGGGGTAAATAATGTCGGCAGGCCTGAGAGAAGGGAA
GGGTGGGGGTTTCCGCACGGTAATCTAATCGAGATGTACTCTGCACGCCC
GTACAAACAGGCCTGCTTTAGCCAACCCCGTTGCCGCTGCTCTTGGGGTT
GTCCGCTCCTTTTCACAATCACCGTCGGTCTTAACTCGTCCCGCCTCGAC
CGTTTCCGGGGCTCTCCTGCTTTCGCGGTTAACAGGGAACGGCCTCAAAG
ACCTGCCGGCGAGCGTAGCCGCTCTCTCCAGCCTTCGTACTCTCCGGCTG
TCGGACAACGCCCTCACGGCCCTGCCGAAAGAGCTGGCCTTGCTCCCGTT
GCTGACAGAGGTGCACGTAGACGGTAACAGCGGGCTAGGCAGCAGCGACA
GAGTGGTCGAGGCGTTGCAGCACAGACCACAGACGACCGTCGTTTTCGGC
GACGCAGGAGATTACTCTCGAAGACGTCTAGAGGACTCTTCGACCTCCTC
GGCGGATAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10203:4683..5695+

>mRNA_Ecto-sp8_S_contig10203.333.1 ID=mRNA_Ecto-sp8_S_contig10203.333.1|Name=mRNA_Ecto-sp8_S_contig10203.333.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10203:4683..5695+ (Ectocarpus species8 EcLAC_412)
ATGGTTATCGCGCGGAGTCTCAAGGACGCGGCGCGGCTAGGGAGCGTGAC
GACCTCTCTGTTGCTGAGGAGGAGCGAGGACCTGGTATGCCAGAACCTCA
TGTGCGCCAAGATAGGCGAGGCTTGCGTCTGTCGGCTGGCCGTCCACTTG
TCCCGGCTGGGGAAGCTGAGGGAGCTCGACGTTGCTGAGAACGACCTCGG
CGTCCTGCCTGAAGCAGTGTTCGAGTTGCCGGCCTTGGAGCATCTGGACG
TCAGTGGGAACGGCCTCAAAGACCTGCCGGCGAGCGTAGCCGCTCTCTCC
AGCCTTCGTACTCTCCGGCTGTCGGACAACGCCCTCACGGCCCTGCCGAA
AGAGCTGGCCTTGCTCCCGTTGCTGACAGAGGTGCACGTAGACGGTAACA
GCGGGCTAGGCAGCAGCGACAGAGTGGTCGAGGCGTTGCAGCACAGACCA
CAGACGACCGTCGTTTTCGGCGACGCAGGAGATTACTCTCGAAGACGTCT
AGAGGACTCTTCGACCTCCTCGGCGGATAGATAG
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