mRNA_Ecto-sp8_S_contig10202.331.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10202.331.1
Unique NamemRNA_Ecto-sp8_S_contig10202.331.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10202.331.1 vs. uniprot
Match: A0A6H5KVS2_9PHAE (MABP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.190e-8
Identity = 52/72 (72.22%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MKIRKRFTLKNLRSSKADTAAESXXXXXXXXXXXX------ESNAGQHRTGNSTSSTDISSSSLVKPSPSYR 198
            +KIRK FTLKNLR+SKAD AAE XXXXXXXXXXXX      ESNAGQHRTGNST+S       LVKPSPS R
Sbjct:   98 LKIRKMFTLKNLRTSKADAAAEXXXXXXXXXXXXXXXXXGAESNAGQHRTGNSTNS-------LVKPSPSNR 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10202.331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVS2_9PHAE9.190e-872.22MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10202contigEcto-sp8_S_contig10202:112..765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.4760888-CDS-Ecto-sp8_S_contig10202:111..3511681143118.4760888-CDS-Ecto-sp8_S_contig10202:111..351Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10202 112..351 -
1681143118.4892488-CDS-Ecto-sp8_S_contig10202:735..7651681143118.4892488-CDS-Ecto-sp8_S_contig10202:735..765Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10202 736..765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10202.331.1prot_Ecto-sp8_S_contig10202.331.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10202 112..765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10202.331.1

>prot_Ecto-sp8_S_contig10202.331.1 ID=prot_Ecto-sp8_S_contig10202.331.1|Name=mRNA_Ecto-sp8_S_contig10202.331.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=90bp
MKIRKRFTLKNLRSSKADTAAESAAAAAASAARGAESNAGQHRTGNSTSS
TDISSSSLVKPSPSYRQDDAATAAVAVAAAAAAGNASSSG
back to top

mRNA from alignment at Ecto-sp8_S_contig10202:112..765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10202.331.1 ID=mRNA_Ecto-sp8_S_contig10202.331.1|Name=mRNA_Ecto-sp8_S_contig10202.331.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10202:112..765- (Ectocarpus species8 EcLAC_412)
ATGAAGATTCGGAAGAGGTTCACGCTCAAGGTGCACAAAGTACTATAGTC
CCGGCGGGGTGGGTTATTGCTTCGAGTACCGCTGTGGCGTGTTCCGGTGG
GATGGGTCACCGCACGAAAGAGGGAACCAATCGTCCTCGGTGAACGGGGA
GACTGCTGTACCCTTTGTGATGGCGATCCGAACGTCACCCCTTTATCCTT
TGAGCCTTGTTGGTTGCGAGGCAAGGACGGGTCTCTCCACGTGCTGTATT
TTTGGTCTCGTCCGTTCTCCTGACTGCTACCACGTCCTCCCATCCATCCA
TCCATCCATCCATCCATCCATCCCCGTCTCTTGCCTCCCCCCTGACTTTT
ACATTTGTAATAATCTCCCCCGTTGTGAATTGTCTGTGTTTTGACCACGT
GAACGAAAATTTAGAATCTGCGATCAAGCAAAGCAGATACAGCGGCGGAA
TCGGCTGCGGCGGCGGCGGCGTCCGCGGCTCGAGGCGCAGAGAGCAACGC
CGGGCAGCACAGAACCGGCAACAGCACCAGCTCCACGGACATCTCCTCTA
GCTCCCTCGTCAAGCCCTCCCCCTCTTACCGACAGGACGACGCCGCCACC
GCTGCCGTAGCAGTAGCAGCAGCAGCAGCAGCAGGAAACGCTTCTAGCAG
TGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10202:112..765-

>mRNA_Ecto-sp8_S_contig10202.331.1 ID=mRNA_Ecto-sp8_S_contig10202.331.1|Name=mRNA_Ecto-sp8_S_contig10202.331.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10202:112..765- (Ectocarpus species8 EcLAC_412)
ATGAAGATTCGGAAGAGGTTCACGCTCAAGAATCTGCGATCAAGCAAAGC
AGATACAGCGGCGGAATCGGCTGCGGCGGCGGCGGCGTCCGCGGCTCGAG
GCGCAGAGAGCAACGCCGGGCAGCACAGAACCGGCAACAGCACCAGCTCC
ACGGACATCTCCTCTAGCTCCCTCGTCAAGCCCTCCCCCTCTTACCGACA
GGACGACGCCGCCACCGCTGCCGTAGCAGTAGCAGCAGCAGCAGCAGCAG
GAAACGCTTCTAGCAGTGGC
back to top