mRNA_Ecto-sp8_S_contig10200.330.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10200.330.1
Unique NamemRNA_Ecto-sp8_S_contig10200.330.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: D8LNV0_ECTSI (Novel protein containing IQ calmodulin-binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV0_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 3.340e-114
Identity = 194/201 (96.52%), Postives = 196/201 (97.51%), Query Frame = 1 
Query:  151 QEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADETLSEERARVRGRVEQARRQAMEAIGERRQALVDKHQAGLERLRKRAAEEAEMQRRW 753
            QEVGAPFQDELEAAEAKDKEALSQHLQ+VDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAE LDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADE LSEERARVRGRVEQARRQAMEAIGERRQAL DKHQA LERLRKRAAEEAE QRR+
Sbjct:    9 QEVGAPFQDELEAAEAKDKEALSQHLQYVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAETLDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADEALSEERARVRGRVEQARRQAMEAIGERRQALTDKHQADLERLRKRAAEEAETQRRY 209
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BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: A0A836C7Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.160e-24
Identity = 81/217 (37.33%), Postives = 125/217 (57.60%), Query Frame = 1 
Query:   40 KDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADETLSEERARVRGRVEQARRQAMEAIGERRQALVDKH 690
            KD L+ L LE+ED +QA +LL +A+ RE V+ KE  + +  A ++ E++  +   KE   Q L+ +DKLL  K+ LS  A  LL+++K +R+ET+ AV    E  +AE+  A+  W++GE  RRE+W+  +T+EIRE T++GLEPE+ERIM +H+A+       H      LR+ A+            R+RG  +     A  A  ER   L ++H
Sbjct:   18 KDALLKLQLELEDSNQALQLLNDAVGREGVQLKEDCENDEQA-WRAEMDRRDGAHKEEAGQALERIDKLLRSKQDLSADAKALLDQVKAERAETAEAVRSAVESAQAELEAARGTWSEGEALRRERWLEMKTREIRENTMRGLEPEVERIMARHEADGTAAASEHRDRMAALREAAAXXXXXXXXXXXXRLRGEADARGGSARSAAAERXXXLAEEH 233
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: D8LNU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.620e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  808 LRNEEHSRLQEMRLQHAEDVDKATRRRAATLASLTRQAELDREDWARRAKEGASAAGEEV 987
            LRNEEHSRLQEMRLQHAEDVDKATRRRAATLASLTRQAELDREDWARRAKEGASAAGEE 
Sbjct:   11 LRNEEHSRLQEMRLQHAEDVDKATRRRAATLASLTRQAELDREDWARRAKEGASAAGEEA 70
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: A0A7S3XZ73_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ73_HETAK)

HSP 1 Score: 101 bits (252), Expect = 6.630e-22
Identity = 63/173 (36.42%), Postives = 108/173 (62.43%), Query Frame = 1 
Query:    4 RPSSATVSYSAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEI 522
            R  + + S+ A+K++ +AL+LEIED  +  ELL   +  E+ +  ++ ++E+   ++ +L+    K+K  +   L  +DKL+  K++L+ +    L +IK+++  T   V  I E+G  EI  A+  WA+GE ARREKW+A+R QE +ELTL+GL PE+E +M KHK + + +
Sbjct:   14 RNGAGSESFLALKEKAIALALEIEDAVRTEELLTSKIEEERQRRNQM-KKEIAQLWEPKLQDVIEKNKAEVQSQLSAIDKLVSEKKALAEECKKALGQIKQEQELTEKKVARIHEEGDEEIERAKRAWAEGEGARREKWLARRAQEAKELTLEGLRPELEHLMLKHKQDEQRL 185
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BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: A0A507CBW9_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CBW9_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 1.680e-16
Identity = 97/325 (29.85%), Postives = 164/325 (50.46%), Query Frame = 1 
Query:    7 PSSATVSYSAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKE---ALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQ---ASLRADETLSEERARVRGRVEQARRQAMEAIGERRQALVDKHQAGLERLR-KRAAEEAEMQRRWQEEEMRRMEGV-----CATDLTRLRNEEHSRLQEM-RLQHAEDVDKATRRRAATLASLTRQAELDREDW 942
            P SA V + +VK +++   LEIE+ S+   +L++ L     K K+L ++++    +D       + KE    + +HL  VDKLL  K  LS +   L E+++    +    +  + E    E+   + +WAQGE A+REKW+A +T++I++ T++GLEPEI+R++ +HK+ +  +E  H  +  R R Q   +  R  ETL       R R+ + RR+A E   E R+    + Q  LER   + A    +M   W E+  + +E           L R + EE  R  E  R    + V+++ RR A  L  L  +  +++E+W
Sbjct:  571 PPSAAV-FDSVKAKIMGQQLEIEEKSRTLAMLKKELK----KYKDLNKEQLSQYRKDVKSKLNLQRKEYETIVKRHLSFVDKLLAEKEELSKRCESLSEEVRNLDKQFQARITTLEESHGRELGRQKDIWAQGEKAKREKWVADKTRQIKDATVRGLEPEIQRMLAQHKSAIRALEEKHAADLARERSQLAESQNRVSETL-------RDRLAEERRKACE---EEREFARQRFQKMLEREEMEHATARRKMVAEWDEQRAQLLENSKEERRALEQLVRQKEEESRRAVEAERALGVQTVEESRRRSATELTVLREKFAVEKEEW 880
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: A0A507CM72_9FUNG (AAA_6 domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CM72_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 9.700e-16
Identity = 93/322 (28.88%), Postives = 166/322 (51.55%), Query Frame = 1 
Query:    7 PSSATVSYSAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKE---ALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADETLSEERARVRGRVEQARRQAMEAIGERRQALVDKHQAGLERLR-KRAAEEAEMQRRWQEEEMRRMEGV-----CATDLTRLRNEEHSRLQEM-RLQHAEDVDKATRRRAATLASLTRQAELDREDW 942
            P+SA V + +VK +++   LEIE+ S+       AL +E  K K+L + ++    +D       + KE    + +HL  VDKLL  K  LS +   L E+++    +    +  + E    E++  + +WAQGE  +REKW+A++T++I++ T++GLEPEI+R++ +HKA +  +E  H  +  R R Q +  +   +SE    +R R+ + RR+A E   E R+    + Q  LER   + A    ++   W E+  + ME           L R + EE  R  E+ R      +++A R+ +  ++ L  +  +++E+W
Sbjct:  479 PASAAV-FDSVKAKIMGQQLEIEEKSRTLA----ALKKELKKLKDLNKDQLAQSRKDLKSKLILQRKEYETIVKRHLAFVDKLLAEKEDLSKRCESLSEEVRNLDKQFQARIASMEETQSRELVRQKDIWAQGEKMKREKWVAEKTRQIKDATVRGLEPEIQRMLAQHKAAIRALEEKHAGDLARERAQIAE-SQNRISES---LRDRLAEERRKACE---EEREFARQRFQKMLEREEMEHATARRKLVAEWDEQRTQIMENAKEERRALEQLMRQKEEESRRTTEVERASSTLALEEARRKASQEMSQLRERLAVEKEEW 788
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: S8GN22_TOXGM (Uncharacterized protein n=17 Tax=Toxoplasma gondii TaxID=5811 RepID=S8GN22_TOXGM)

HSP 1 Score: 82.8 bits (203), Expect = 8.150e-14
Identity = 62/187 (33.16%), Postives = 104/187 (55.61%), Query Frame = 1 
Query:    7 PSSATVSYSAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQA 567
            P  A    + ++ ++ AL L IE+  Q+   L++ L++++   ++L +Q      Q   +A  AK +EA+ + L  VDKLL  K  L+ +  GL E++K+  +   + +EE  ++ + E    +      E ARRE W   +TQEI+E+T+KGLEPEI+R+MD+H+ E   IE    R  +  +K A
Sbjct:   56 PIGADSKTAVLRQKVAALELVIEEKHQSVLALKKLLDQQEEAKRQLKEQ-----LQKGFKAEIAKYEEAVERQLNMVDKLLADKNELTKKCDGLAEEMKQAEARFQLKLEEQEKRFEREAERQKRQSISAEKARREAWQRDKTQEIKEITIKGLEPEIQRLMDRHQQEKRRIEEKIRRALEEFQKDA 237
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: A0A1Y2HZ97_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HZ97_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 2.410e-13
Identity = 92/330 (27.88%), Postives = 155/330 (46.97%), Query Frame = 1 
Query:   16 ATVS--YSAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIE---------------RGHHREAQRLRKQASLRADETLSEERARVRGR-VEQARRQAMEAIGERRQALVDKHQAGLERLRKRAAEEAEMQRRWQE---EEMRRMEGVCATDLTRLRNEEHSRLQEMRLQHAEDVDKATRRRAATLASLTRQAELDREDW 942
            ATVS  + AVK +L+AL LE+ED +++   L++ L++ ++ A +   Q+     + +L     + + A+ +HL  +DK L  K +L+ Q   L   +K+  +E    +  + EK   E+  A+ +W   E  +R+KWM+ +  +I+E T+KGLEPEI+R++  HK  M   E               R H  +   LR          + EER   R R  +Q  R  ME    +R+ +               AE AE++   Q    +EMR ME      +  LR    ++++E R      ++   R+ A  L+ +  QA ++RE W
Sbjct:  216 ATVSPAFDAVKSRLIALELEVEDKARSIAALKQQLHQSRL-ATQNQAQDHARLLKSQLALQRKEYEAAIKRHLAFIDKTLAEKETLATQCAELGAHVKKMEAELKAKLAGLAEKHDREMKSAKGVWEASEKIKRDKWMSMQAAKIKEQTVKGLEPEIQRMLASHKTAMAMAEEKWREQWVGERTSLMRAHEIQIANLRXXXXXXXXRAVDEEREAARARYAKQLERDEMEHAQAKRKWM---------------AEMAEVKDALQSGFRDEMRSMEAAHRKAMDELR----AQIEEERDGKMHAMEDLRRKHAHELSKVQEQARVEREAW 525
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: T2M2U4_HYDVU (5-azacytidine-induced protein 1 (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M2U4_HYDVU)

HSP 1 Score: 81.6 bits (200), Expect = 2.590e-13
Identity = 65/236 (27.54%), Postives = 130/236 (55.08%), Query Frame = 1 
Query:   31 SAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQQEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADETLSEERARVRGRVEQARRQAMEAIGERRQALVDKHQAGLERLRKRAAEEAE 738
            S + D + A   EI++  +  E++++A+N+ Q +   +   E+    + +L    ++ +  + +HL  +D+L++ K+ L+ +   L+ K+KE     S  ++++ E    E+   + +    E  RREKW+ ++TQEI+ELT+KGLEPEI+R++ KHKAE++ I+  +  E     ++ + +  + L + RA+     E A R+  E+  ER +  + + +   ++ R+R   E E
Sbjct:  422 SEISDAISAQKNEIKEKQKTVEMMKKAINQ-QKEFSSVQIIEMEKEHKQQLSLQRSEYEATIQRHLSFIDQLIDDKKVLTQRCEDLVSKLKEMDQRFSTKIKQMTESHALELKKQKDINEAAEKIRREKWIKEKTQEIKELTVKGLEPEIQRLITKHKAEIKAIKNANQTEVMNADERVAQKYMQQLDDLRAQYEIDKETAVRKERESCRERLEQQIQEEENSFQQQRRRLYSEIE 656
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Match: UPI00188F9F77 (centrosomal protein of 131 kDa n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F9F77)

HSP 1 Score: 81.6 bits (200), Expect = 2.690e-13
Identity = 74/253 (29.25%), Postives = 140/253 (55.34%), Query Frame = 1 
Query:   58 LSLEIEDCSQAAELLREALNREQ---VKAKELPQQEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKIKEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADETLSEERARVRGRVEQARRQAMEAIGERRQALVDKHQAGLERLRKRAAEEAEMQRRWQEEEMRRMEGVCATDLTR 807
            L LE+E+  QAA LL+ AL +++   V+  +  ++E+G   + + E  EA    A+ +HL  +D+L+E K++LS +   L+ ++ +        V +++E+ + EI   + L +  E  RREKW+ ++T++I+E+T++GLEPEI+R++ KH+ E++ ++  H  E         LRADE  +++ AR  G + +   +   A+G          Q   ER ++R  +  E ++R  +++ RR+    A +  R
Sbjct:  569 LQLEVEEKKQAAALLQRALAQQRDLAVRRVKETERELGRQLRQQREHYEA----AVQRHLSFIDQLIEDKKALSGKCEALVAELTQGDQRHKQKVAQMQEQHELEIQKLKELMSATEKVRREKWIHEKTRKIKEITVRGLEPEIQRLIAKHRQEVKRLQGLHAAEL--------LRADERAAQDCARQLGELRELLEREKAALG----------QQERERAQQRFEQHLEQEQRALQQQRRRLYSEVAEEKER 799
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10200.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNV0_ECTSI3.340e-11496.52Novel protein containing IQ calmodulin-binding mot... [more]
A0A836C7Z8_9STRA1.160e-2437.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LNU9_ECTSI8.620e-2498.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XZ73_HETAK6.630e-2236.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A507CBW9_9FUNG1.680e-1629.85Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A507CM72_9FUNG9.700e-1628.88AAA_6 domain-containing protein n=2 Tax=Synchytriu... [more]
S8GN22_TOXGM8.150e-1433.16Uncharacterized protein n=17 Tax=Toxoplasma gondii... [more]
A0A1Y2HZ97_9FUNG2.410e-1327.88Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
T2M2U4_HYDVU2.590e-1327.545-azacytidine-induced protein 1 (Fragment) n=1 Tax... [more]
UPI00188F9F772.690e-1329.25centrosomal protein of 131 kDa n=1 Tax=Talpa occid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10200contigEcto-sp8_S_contig10200:10..6910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop1
Start1
Seed ortholog score86.3
Seed ortholog evalue3e-14
Seed eggNOG ortholog5811.TGME49_005590
Model size996
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.Centrosomal protein
EggNOG OGs28KJ8@1,2QT0Q@2759,3YFS6@5794,3YJBN@5796,3YUKC@5809
Ec32 ortholog descriptionNovel protein containing IQ calmodulin-binding motif
Ec32 orthologEc-08_005750.1
Cds size996
COG Functional cat.S
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10200.330.1prot_Ecto-sp8_S_contig10200.330.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10200 10..6910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.3387268-CDS-Ecto-sp8_S_contig10200:9..841681143118.3387268-CDS-Ecto-sp8_S_contig10200:9..84Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 10..84 +
1681143118.3500628-CDS-Ecto-sp8_S_contig10200:413..4881681143118.3500628-CDS-Ecto-sp8_S_contig10200:413..488Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 414..488 +
1681143118.3636816-CDS-Ecto-sp8_S_contig10200:1582..16751681143118.3636816-CDS-Ecto-sp8_S_contig10200:1582..1675Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 1583..1675 +
1681143118.3720567-CDS-Ecto-sp8_S_contig10200:2689..27431681143118.3720567-CDS-Ecto-sp8_S_contig10200:2689..2743Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 2690..2743 +
1681143118.3806515-CDS-Ecto-sp8_S_contig10200:3150..32461681143118.3806515-CDS-Ecto-sp8_S_contig10200:3150..3246Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 3151..3246 +
1681143118.3955193-CDS-Ecto-sp8_S_contig10200:3537..36061681143118.3955193-CDS-Ecto-sp8_S_contig10200:3537..3606Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 3538..3606 +
1681143118.404931-CDS-Ecto-sp8_S_contig10200:4044..41191681143118.404931-CDS-Ecto-sp8_S_contig10200:4044..4119Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 4045..4119 +
1681143118.4138334-CDS-Ecto-sp8_S_contig10200:4739..48651681143118.4138334-CDS-Ecto-sp8_S_contig10200:4739..4865Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 4740..4865 +
1681143118.4239926-CDS-Ecto-sp8_S_contig10200:5301..53871681143118.4239926-CDS-Ecto-sp8_S_contig10200:5301..5387Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 5302..5387 +
1681143118.4314723-CDS-Ecto-sp8_S_contig10200:6048..61051681143118.4314723-CDS-Ecto-sp8_S_contig10200:6048..6105Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 6049..6105 +
1681143118.4391794-CDS-Ecto-sp8_S_contig10200:6720..69101681143118.4391794-CDS-Ecto-sp8_S_contig10200:6720..6910Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10200 6721..6910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10200.330.1

>prot_Ecto-sp8_S_contig10200.330.1 ID=prot_Ecto-sp8_S_contig10200.330.1|Name=mRNA_Ecto-sp8_S_contig10200.330.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=332bp
MRPSSATVSYSAVKDQLVALSLEIEDCSQAAELLREALNREQVKAKELPQ
QEVGAPFQDELEAAEAKDKEALSQHLQHVDKLLERKRSLSVQATGLLEKI
KEQRSETSIAVEEIREKGKAEILDAQALWAQGEDARREKWMAKRTQEIRE
LTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADETLSEE
RARVRGRVEQARRQAMEAIGERRQALVDKHQAGLERLRKRAAEEAEMQRR
WQEEEMRRMEGVCATDLTRLRNEEHSRLQEMRLQHAEDVDKATRRRAATL
ASLTRQAELDREDWARRAKEGASAAGEEVGM*
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mRNA from alignment at Ecto-sp8_S_contig10200:10..6910+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10200.330.1 ID=mRNA_Ecto-sp8_S_contig10200.330.1|Name=mRNA_Ecto-sp8_S_contig10200.330.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6901bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10200:10..6910+ (Ectocarpus species8 EcLAC_412)
ATGCGTCCTTCCTCCGCAACTGTGTCATACAGTGCCGTCAAAGATCAGCT
GGTGGCTCTTTCACTGGAGATTGAGGTACGGGAGCGGGCGCCTGGAGATC
GTGTCGGTATCCGGCGATTTACAGCAACGTCATACGAACGAGCGATGATG
TACCGCAGTCTACTGGATTGCCGTGGTCTACAATGTCTAGATAGCAAAGG
AGGCCTACTCTCTCCACGCTGCTATATGCGCAGCCAGACCATGTTGAAGA
AAGCCGAGGAAATAGCCACCCTTGTTCGACAAAGGACTAAGTACCATTCA
CCTGCATGTATGCTCAAAGCGATACTCAAACCTATGAATACGGCAAGACC
TCATGGCCCACACCCGTCTGCCCTCTGCTGTTGTTTCTTGCCGCCGCGAT
TCAGGACTGCTCCCAAGCCGCCGAGCTCCTCCGTGAAGCACTCAATCGGG
AACAAGTTAAAGCAAAAGAATTGCCGCAGGTACCGTGTTATCACTGGTTC
AAAAGCAACAGCTTCAACTTCTCCTATGCTCGGCACAATAATGCTGAAGA
CCATATAAATGTGTTCTCATCGCCATTGTTGATAACTTTCCGTTGAGTAT
TTGATTGGGTTGGGCCTTCTGCCTCGAAGGCAGGTGGTCCTCGCTCAGGA
CCTATCACCACGCAGAGTGTGAGAAGACCACAGCGCGGCAACATGTCTTG
GAAGTAGTCAACACAATAACACGTACAATAATAGTCTATAGTACATGCTG
GAGAATAGAATATCTTTCAGGGTGGCCTGCAGGGCCCTGTTTAGTAGAGC
GGGTGGGATGGTCTTTGTTCAATTTGCAAACGTTGCCTTTGGGGCGGCGA
GCGAACGGATGTAGAGTTGGCATACTATTTTCTACGTGGGGGGGTGCGGT
TGGTACCTACCCCGTGCCGTTACCGAGTCCATCTGATTGGCTCCCCAATA
TTTGAGCACATGAAGAAAGACTATTCTAGTCCATTAGATTGTTAGTTTTT
CGATTGGTTGAGGTTTCCTCCCCCCTCCAGCCGGTGACCCCAGCCACCTT
TCTATGTCCCTTGCATTCCCTTTCGTCACCAGCCCGAGCGTGTAGCCTCA
ACCTCAAGAATGCTCTAAATGCTAGCTCGCTCAGTCGGTTAACAGGCAGG
CGGGAATGCCTCGTACTCGTCTTCGCCCGGTGCCACTGACCCCCGGCGTG
GTATGCGGGGCAATAGTGCATATCGTGGTCGGTAAATGGTCTGAAAAAAA
AAACTCAGCCTCGCCCCAAGAGGGTGAGGATCCGCCCCGATAGCGGGCTA
CAAACACTAGCGAGAGTCTCTACAATTATTGAGCAACCGCGGAAACGATG
TTGACAATTCAGGCTGAGGGTCGAGAAAACACAACGGAGTACAGGGTGCA
GAAGAGGCAGCACCTTTATCTATCAATCAATCAATCAATCATATCTATCT
ATTAATGGCGACTGATACTCCGCGGTGCCGGTTAAGTACGAACGGAAATA
TCTCCTCCTCGCACCCTGATTGTGACGTACGGCTGCGGCGGAACCAACCT
TGAATAATAATCATAATGACGAGCAGGAGGTCGGAGCACCCTTTCAGGAT
GAACTTGAGGCGGCAGAAGCCAAGGACAAGGAAGCACTATCGCAGCACCT
TCAACATGTCGATAAGGTAACGTTCTTGGTGGCGATAGCTGGAGCCCTTC
AGGGGGTTGCCTGCAAGCGCATGTGCTTTCACTGGCTGTACCCTCGGGTT
TCTAGTCTTATGGGACAACAACATGAATTACCTATGACGACAAGAATATT
TGTTGAGTGTGTGTTTGGACCTGAAAAGCCGCTACCAATGTTTATGGCCA
TACTATCCCCGCAATAGGAGGAATAAACTGTGCGAGGTTTCCACAGGATC
CCTGATCGTTGTATGTCACCACGCGACTCCTCGTTATTATGTATGGCGGA
GCACTGAGTGGTGCAGTTGTCTTTCTCGCAACCTTCTGATGTTTGGGCCA
TGGGTACGAAAGTCGGTGGAGTCACACGAGATGGGACTGTTTCTCACAAG
GTAGCCCACACGAACAACATGGAGAGCCAAATATTTCGTGTGTGCGAATC
AAACTCCCGTGTGGCCTTCCTCGTGTCCGTGTGACTCCGACTGGTGCGTC
GAAACCCAACAAAAGGTGCAAAGACTGACGCGACGTCCAGAATTTCAATG
GGACGATACATAAACACCGAATACTGTTCAGTTCAGATCGAGAAAGGTAT
TACGATTGGTTGAGATACATACGCACAAATACCGTTTTGTAACCACGTTT
TGTTGAGTAGAGAGGCGCGGACGCAGGCTATTGCATGGGTTGTGACTGCG
AACGATATTTAGGAAACCACCCATTCGAGACTACGGGATGTTTTACGAGG
GAGCCGTACCAAGCCTCCCCCGTCCTTCCCCACTCTGTCGTCACTAAACA
CCTCTCCACAGCGCATTAGCCGTTTCTTCCCCACGACGCACACGTTGCGT
GATTGCGCGGACACCGTCTTGCCGCCTACATACTCTGCGCACGCTTAACC
TTCCCCGCGAGAAAAATACACATTTGAGCGCTCGAGGCCGAGACCGATTA
ACAACACGCGTGTTGTTGCTTTCGCCAAGTATGCCTGAATCCATCCTAAC
AATGTTTGACGATTGATCCTTCCGCGGCAGTTGCTGGAGCGCAAGCGAAG
CCTGTCGGTACAGGCGACGGGTCTCCTAGAAAAGGTGGACAGCTCTTGTT
CTTGTTCTTGTTCTTGTTCTTCATTCTTCGCGGAAAATTTCTGTGAAACA
CAGCCGTTCTATGTCGCTCGGCTGGATTCTCAGCACAACGCCCTTCGCGG
GTACTCTTTCGCCTAACCGTTACCTGCTGTTTCTAACTACGAGGTACACC
GTACGTACTGTAGGTCTTTCAGCCATATCGGAACGAATGGGTCAGACAAG
AGTGACGTTGCCGAGATGACCGGTCAGGTAGGGTCAAGGGTTCGAGTCCC
TGAGGAGACAACCACGTGGGAGCTCTCCAATCATGAACGCATCTATCTTC
GCCCCCAACACTGGCATGATTCACTGGTAAGAAAAGACTCGTTCCCCTTT
TTCTTTGATTTTTGTTTTTCCAATTATTCTCGACATCCCAGATAAAAGAA
CAACGGTCGGAGACGTCGATAGCAGTGGAGGAGATTCGCGAGAAGGGAAA
GGCCGAAATCCTCGACGCTCAAGCCTTGTGGGCACAGGTGCGCGAACGCG
GGAATCGCTGGGGTTGTGTTTCGCTGTTTGTTGCTGTTGAGACACACCAT
CGCGCTGTCACTCGTTTCGCTTCGCGTCATCCGCCTTCGTTTGTATCAGT
GAATCGCATAGACTCAGAGAAGCACCTATCGCCTAGCGCCAACCCCGCAA
CATGCGACTATTTATGCCTATGGTTTTCACCTCCAGTATCTCGCCTCGCT
CTTTCTCGTCTTCTTCGCTGCACGGACAAACGTTTCGGTCCACTACATAA
TGATATCATCCTGCACCGGGGATCCAAGGGAGAAGATGCCCGGAGGGAAA
AATGGATGGCGAAGCGGACGCAAGAGATTCGCGAGCTGACGCTGAAGGTG
CCGTTCAATAGGCTGCAATCTGACAGCAAGAAACAGCGTTGAAGTCTACA
GCCGAACTCCTAGGAAGAAAATCTCGTGATACGCAATGTGCCAATAGCAG
CGGTAATTATGTGTTTTGTTTCTTCGAAATCTTGGCCCAGCGTACTCGCT
CGTGGTTTCTGCGCAGCGCGTTCACGACGAATCATGAAGACCTCACGTGC
ATGAGCGACAAAATCCCGAACAACACTTATAAAAAACTCGCTTGGTCCAT
GCGCGCCGCATCGGATGGACCCATTGCTCCTATTATATAAAGTAGCTATT
TTCTTTACGCCCCCTGCAGCTTCTTACGTAAGGCCAAAACGCGTAAAAAT
CTTAATAGATGCCTTGAGTGAATCGAGGCTTCCGCTGTCGGCCTTACTGC
CATGTTTGAATTGCGCGGCCTGGCCAACATTGAAGGGGCTGGAGCCGGAG
ATCGAGCGCATCATGGACAAACACAAGGCGGAGATGGAGGAAATCGAGCG
AGGGCATCACGTGAGTGAGACGAGAGAAGGGCAAGCAACAGCACCAGCAG
CATAACGGCTGTGATGACATGTCCCCTCGAATCACGCGAAAGAACGGCGA
TGGACGTGGTTGCTCTGATCGAAGTTGTGGGTTGGAATTTGTCGCGGACG
GCGGGGGGTTTCTGTTTGCCTGGCAACACCCCGCCCCCGGGCTTGTCGAA
AAATGAAAGCGTCGTTATTTGCTGGCGTTGGCAGCAATCTCTTTCGAATC
CACTTCCTAAACATCTCCGTCTGCCGACGCGATAGACGTGTCCCCCTACC
CTGAGCTTTTTTAATGTTTTTCGGAAAAGCGATAAGGGGTATTGAGCACA
CGCCCCGACAGGTCACTATTCTTGCCCCGCAAGGAGAGGTCGAGAGTGCT
GCCCATCGGTGCCCCGCCCTCCACTCCCGCCGACATTCTCTTGTGAGCTC
TTCGCCCCCCCCCCGCCCTCCCCGTGCGGTTGGCCATCGGTGATCGCTCC
TGTGGGAACAATGCCCCGTCCTGTCGAGGACGCGTGGCTAATGGTCTAAC
CCGTGGTTAATGGTCTTAGCAGCTAAAGCATGCAAAACATGAGTACCGCC
CCCCCCTCCCCCCGTTCACCTTCCTACCAGCGAGAGGCCCAGCGGCTGAG
GAAGCAGGCGTCTCTCCGAGCGGACGAGACTTTGAGCGAGGAGCGGGCGC
GGGTGAGGGGCCGGGTCGAGCAAGCTCGGCGTCAGGCCATGGAGGCTATT
GGCGAGGTGCGTGCAGGGCACGGGTGGCCTCAGCTATGTGGGGTGTTGTT
GGGGTGTTGTTGCTCTTGCGCCCCACGCGGGTTCTCGTTGCTTGTGGGTA
GTCCGGGGTGAGGTTTTGGTTGGTGCTGTGTACTGGCGATACAGCTGTCC
CTCCCAAGCACTCTCCCTTGTTGGTTGATTGTGTAGGTGGGTCGCCCCTC
GGCCCATGGGCTCAAAAGAACCGAGTTCAAAACACGCCCTGAAGGCTTAG
CTTCCTTGTCCTTTCGTCTCTGAGCATCGGCAAGACTCTATGGATTGTGA
CCAGCAAAGAGACTTTCTTGCGAGTCGCCACAGGTGGAAAACGGAAAATT
GCCACTCGAAGTTCTGATTTGAACGTCTTTGTGTTGTCTTGGCACCGACG
GCGGTTGCGATGACCTCCCCACTGAACACCGACCGCTGCTAGAGGCGACA
AGCGCTAGTGGACAAGCACCAAGCCGGCCTCGAGCGCTTGAGAAAGCGGG
CAGCCGAGGAGGCAGAGATGCAGAGAAGGTACGACAAGGCGCGCACGGCA
CTCCTCGAATTCATCTAGATGGAATAGTATCTTCTTCGTCTTCTTCTTAG
TCATCCACCGAGAGAGAGAGAGCGAAGGCGGCACGTGAAAAAAGCAATTC
AATGTTTTTTGGCCTACTGAAACATCTTGTTCAAGCTGTTTCGGGGGCAG
ACACTCCTTAAATAACCATCTCCACCCCCATCCGCTCCAAAAATAGTGTC
CCGACACACCTCCGGATCCTTGATCGGTTCACAAGCCTTTGCTATCTCGG
AAATTGTGCAAAGGAAGAGATGTCCTCAAGATGCGTGCCAGGCTACTACA
TACTCAAAGATATCGCCTCAGTTATTTCACAGTCAGCCTCATCGGTAGCT
AAAAACAGTCAAACACAATAGAAGCGTGGCGCGTGAAAGGGGTATCCCGT
GTTCCTGGACCAGTACCTCTGTCCGATCGCTTTTCACACACCCCATCTCT
TCTTCTCCGCGCACCCTCCCTTACTCGTCGCAGCCACTCATTACAGCACA
ACGCGTTATGTGAGAGACATTTACTACGTGATACACGCTTCAATCGCTTC
TCTCTCACCATTTTCCTCACAACCATCGTGTGAATAACGCGCACGCACTG
AGTTCGTTTGGTTTCCCCCCAACATCAATTCCACGGCAGGTGGCAGGAGG
AGGAGATGAGGAGGATGGAAGGCGTTTGCGCGACGGATCTAACGAGGTGA
CGAAACGTCATATCTATCTTACTTCGGGCTTGCATGGTGCACTGCAGGGG
CCTCGGAAATGATGTAAAGAGAGAACCCAGTCCTCGAGCACAAGGGTGTG
TTGCTCGTTGCCCAAGGGAAGCGCGGAGTGCCCGTATTATGGGGGAGGGA
GGTTCAGCCACGGGTTGTCCAAGAACTTGCAGGAATGGTACTCGCAGGAA
CGACCTGCAGGGATGAAGTTGGTGAAAAGGAAACCACGACCGTATGAAAG
AGACTCTATATTGCTACGATTGGATCAACAGAGTATGAACTCACGAAATA
TTGAAGCCGGGATGGGATCGGTGGTTTTCCAGATGAAGAAGTACAGGGAG
ATCGCAACATGAGAGTTTCCTTTGTGGTGGTTTTGTTTGGTCCAGGCGCT
TTGTCGAGAGGAAGAACACCAATAATTGGAGCACGAGACAGCAATAAACA
GTGCTCCACCAGAGCATAGCCCTTAGAGCCTGATACGCGTGGCCAAACCT
CGTTTAACGGAGGCAAGCAATGAACTCGGACGGCCCCCTTCCCCTCGCCA
CTTTCCCATCCTTACGCCGCCCAATCCTTCCTTGACCGCCGCGATGAAAC
ACACACCGTAGGTTACGGAACGAGGAGCACTCGCGCCTGCAGGAGATGCG
CCTCCAGCACGCGGAGGACGTCGACAAAGCCACCCGAAGGAGGGCCGCCA
CGCTCGCCTCGCTCACGCGCCAGGCGGAGCTAGACCGGGAGGACTGGGCC
AGAAGGGCAAAAGAGGGGGCCTCGGCAGCGGGGGAAGAGGTGGGGATGTG
A
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10200:10..6910+

>mRNA_Ecto-sp8_S_contig10200.330.1 ID=mRNA_Ecto-sp8_S_contig10200.330.1|Name=mRNA_Ecto-sp8_S_contig10200.330.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10200:10..6910+ (Ectocarpus species8 EcLAC_412)
ATGCGTCCTTCCTCCGCAACTGTGTCATACAGTGCCGTCAAAGATCAGCT
GGTGGCTCTTTCACTGGAGATTGAGGACTGCTCCCAAGCCGCCGAGCTCC
TCCGTGAAGCACTCAATCGGGAACAAGTTAAAGCAAAAGAATTGCCGCAG
CAGGAGGTCGGAGCACCCTTTCAGGATGAACTTGAGGCGGCAGAAGCCAA
GGACAAGGAAGCACTATCGCAGCACCTTCAACATGTCGATAAGTTGCTGG
AGCGCAAGCGAAGCCTGTCGGTACAGGCGACGGGTCTCCTAGAAAAGATA
AAAGAACAACGGTCGGAGACGTCGATAGCAGTGGAGGAGATTCGCGAGAA
GGGAAAGGCCGAAATCCTCGACGCTCAAGCCTTGTGGGCACAGGGAGAAG
ATGCCCGGAGGGAAAAATGGATGGCGAAGCGGACGCAAGAGATTCGCGAG
CTGACGCTGAAGGGGCTGGAGCCGGAGATCGAGCGCATCATGGACAAACA
CAAGGCGGAGATGGAGGAAATCGAGCGAGGGCATCACCGAGAGGCCCAGC
GGCTGAGGAAGCAGGCGTCTCTCCGAGCGGACGAGACTTTGAGCGAGGAG
CGGGCGCGGGTGAGGGGCCGGGTCGAGCAAGCTCGGCGTCAGGCCATGGA
GGCTATTGGCGAGAGGCGACAAGCGCTAGTGGACAAGCACCAAGCCGGCC
TCGAGCGCTTGAGAAAGCGGGCAGCCGAGGAGGCAGAGATGCAGAGAAGG
TGGCAGGAGGAGGAGATGAGGAGGATGGAAGGCGTTTGCGCGACGGATCT
AACGAGGTTACGGAACGAGGAGCACTCGCGCCTGCAGGAGATGCGCCTCC
AGCACGCGGAGGACGTCGACAAAGCCACCCGAAGGAGGGCCGCCACGCTC
GCCTCGCTCACGCGCCAGGCGGAGCTAGACCGGGAGGACTGGGCCAGAAG
GGCAAAAGAGGGGGCCTCGGCAGCGGGGGAAGAGGTGGGGATGTGA
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