mRNA_Ecto-sp8_S_contig101985.324.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101985.324.1
Unique NamemRNA_Ecto-sp8_S_contig101985.324.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: D7FPR4_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR4_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.290e-45
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1
Query:   13 KLAAVGNQERQCSKSSGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            K+AAVGNQERQCSKSSGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ
Sbjct:  502 KMAAVGNQERQCSKSSGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 580          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: T0QSD8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QSD8_SAPDV)

HSP 1 Score: 90.5 bits (223), Expect = 3.330e-19
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSKS-SGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            ++KLA +   E+Q SK+ S   DTSQHGNW+NFRN  ++ +PVVLTSA+F  +PS G L FDYVSTSRP     P++ RRFQ
Sbjct: 1040 VMKLAEIAQAEKQFSKTRSCRGDTSQHGNWENFRNELFDGKPVVLTSAFFQNVPSKGKLEFDYVSTSRPKRGTKPMSTRRFQ 1121          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A5D6XPE9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPE9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.340e-19
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSK-SSGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            L K+A V   E+  S+  SG ADTSQHGNW+NFRN E + +PVVLTSA+F+ LP  G L FDYVST+RP     P++ RRF+
Sbjct: 1094 LNKIAEVAQSEKLFSRLKSGRADTSQHGNWENFRNEELDGQPVVLTSAFFLVLPRRGKLAFDYVSTARPKRGTAPMSARRFE 1175          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A397AQQ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AQQ8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.010e-18
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSKS-SGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            L+KLA V   E+Q SKS SG  DTSQHGNW+NFRN   + +  +LTS +F  +P  G L FDYVSTSRP     P+++RR+Q
Sbjct:   86 LIKLAEVAQAEKQFSKSRSGRGDTSQHGNWENFRNEWLDGKATILTSHFFQTMPQKGKLEFDYVSTSRPTRGTKPMSDRRYQ 167          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A8K1CIN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIN9_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 1.580e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   13 KLAAVGNQERQCSKS-SGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            K+A V  +E+  SK+ SG  DTSQHGNW+NFRN   + E  VLT+A+F  LP+SG L FDYVST+RP    +PL+ERRFQ
Sbjct: 1067 KIAEVAQREKLFSKNKSGRGDTSQHGNWENFRNELLDGECFVLTTAFFHMLPTSGKLSFDYVSTTRPKRGTVPLSERRFQ 1146          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A6G0W9B4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9B4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.150e-18
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSKS-SGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            L+KLA +   E+Q SK+ SG  DTSQHGNW+NFRN   + +P +LTS++F  +P  G L FDYVST+RP     P+++RRFQ
Sbjct:  893 LVKLAEIAQAEKQFSKARSGRGDTSQHGNWENFRNEMVDGKPAILTSSFFQTMPLKGKLEFDYVSTTRPPRGTKPMSDRRFQ 974          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A1W0A877_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A877_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.020e-18
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSKS-SGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            L KLA +   E+Q SK+ S   DTSQHGNW+NFRN  +  +P++LTS +F  +P+ G L FDYVSTSRP     P++ RRFQ
Sbjct: 1036 LFKLAEIAQAEKQFSKTRSCRGDTSQHGNWENFRNELFEGKPIILTSTFFQNIPNKGKLEFDYVSTSRPKRGTKPMSTRRFQ 1117          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A662XVY1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XVY1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.500e-18
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSK-SSGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRF 246
            L KLA V   E+  SK  SG ADTSQHGNW+NFRN E +   +VLT+A+F  LP  G L FDYVST+RP    +P++ERRF
Sbjct: 1049 LTKLAEVAQSEKLFSKLRSGRADTSQHGNWENFRNEELDGHRIVLTNAFFHVLPRRGKLCFDYVSTTRPKKGTVPISERRF 1129          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: K3WEV2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV2_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 7.460e-18
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSK-SSGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRF-QVPHVI 264
            L K+A V   E+  SK  SG ADTSQHGNW+NFRN E + + +VLT+A+F+ LP  G L FDYVST+RP     P++ RRF Q+ H +
Sbjct:  764 LNKIAEVAQSEKLFSKYKSGRADTSQHGNWENFRNEELDGQKIVLTNAFFLVLPRRGKLSFDYVSTTRPKRGTTPMSARRFDQLIHEL 851          
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Match: A0A024TU08_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TU08_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.510e-18
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 LLKLAAVGNQERQCSKS-SGHADTSQHGNWQNFRNAEYNREPVVLTSAWFIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQ 249
            L KLA +   E+Q SKS SG  DTSQHGNW+NFRN   + +P +LTS +F  +P  G L FDYVST+RP     P+++RR+Q
Sbjct: 1114 LAKLAEIAQAEKQFSKSRSGRGDTSQHGNWENFRNEWLDGKPTILTSHFFQTMPQKGKLEFDYVSTTRPTRGTKPMSDRRYQ 1195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101985.324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR4_ECTSI1.290e-4598.73Hypothetical leucine rich repeat calcium binding p... [more]
T0QSD8_SAPDV3.330e-1956.10Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5D6XPE9_9STRA3.340e-1956.10Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A397AQQ8_9STRA1.010e-1853.66Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8K1CIN9_PYTOL1.580e-1857.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0W9B4_9STRA2.150e-1852.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0A877_9STRA4.020e-1852.44Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A662XVY1_9STRA5.500e-1856.79Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WEV2_GLOUD7.460e-1852.27Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024TU08_9STRA7.510e-1852.44Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101985contigEcto-sp8_S_contig101985:249..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score167.5
Seed ortholog evalue2.8e-39
Seed eggNOG ortholog2880.D7FPR4
Model size273
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.9836564-CDS-Ecto-sp8_S_contig101985:248..5211681143117.9836564-CDS-Ecto-sp8_S_contig101985:248..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101985 249..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101985.324.1prot_Ecto-sp8_S_contig101985.324.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101985 249..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101985.324.1

>prot_Ecto-sp8_S_contig101985.324.1 ID=prot_Ecto-sp8_S_contig101985.324.1|Name=mRNA_Ecto-sp8_S_contig101985.324.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=91bp
MKLLKLAAVGNQERQCSKSSGHADTSQHGNWQNFRNAEYNREPVVLTSAW
FIKLPSSGMLRFDYVSTSRPDHHQIPLTERRFQVPHVICR*
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mRNA from alignment at Ecto-sp8_S_contig101985:249..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101985.324.1 ID=mRNA_Ecto-sp8_S_contig101985.324.1|Name=mRNA_Ecto-sp8_S_contig101985.324.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101985:249..521+ (Ectocarpus species8 EcLAC_412)
ATGAAACTTCTTAAGTTGGCGGCCGTGGGAAACCAAGAACGGCAATGCAG CAAGTCAAGCGGGCATGCAGATACATCCCAGCACGGCAATTGGCAAAACT TTAGGAACGCAGAGTACAATCGTGAGCCGGTGGTTCTGACGTCTGCCTGG TTCATCAAGCTACCAAGTTCTGGCATGCTCCGCTTCGACTACGTTTCGAC GTCTAGACCCGACCATCATCAGATTCCCCTTACAGAGAGGAGATTTCAGG TACCGCACGTTATCTGTCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101985:249..521+

>mRNA_Ecto-sp8_S_contig101985.324.1 ID=mRNA_Ecto-sp8_S_contig101985.324.1|Name=mRNA_Ecto-sp8_S_contig101985.324.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101985:249..521+ (Ectocarpus species8 EcLAC_412)
ATGAAACTTCTTAAGTTGGCGGCCGTGGGAAACCAAGAACGGCAATGCAG
CAAGTCAAGCGGGCATGCAGATACATCCCAGCACGGCAATTGGCAAAACT
TTAGGAACGCAGAGTACAATCGTGAGCCGGTGGTTCTGACGTCTGCCTGG
TTCATCAAGCTACCAAGTTCTGGCATGCTCCGCTTCGACTACGTTTCGAC
GTCTAGACCCGACCATCATCAGATTCCCCTTACAGAGAGGAGATTTCAGG
TACCGCACGTTATCTGTCGATGA
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