mRNA_Ecto-sp8_S_contig10198.323.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10198.323.1
Unique NamemRNA_Ecto-sp8_S_contig10198.323.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10198.323.1 vs. uniprot
Match: D8LCC6_ECTSI (Riboflavin kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.450e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = -3 
Query:  632 VEAGALLSGLGDGEWRHGHRHQAPLRCMHERARAV 736
            VEAGALLSGLGDGEW+HGHRHQAPLRCMHERA A+
Sbjct:  550 VEAGALLSGLGDGEWKHGHRHQAPLRCMHERAGAM 584
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BLAST of mRNA_Ecto-sp8_S_contig10198.323.1 vs. uniprot
Match: A0A6H5L9C1_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.610e-9
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = -3 
Query:  632 VEAGALLSGLGDGEWRHGHRHQAPLRCMHERARAV 736
            VEAGALLSGLGDGEWRH H HQ+PL CMHERA AV
Sbjct:  516 VEAGALLSGLGDGEWRHSHCHQSPLCCMHERADAV 550
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10198.323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCC6_ECTSI5.450e-1291.43Riboflavin kinase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L9C1_9PHAE1.610e-985.71RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10198contigEcto-sp8_S_contig10198:6133..6870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.933769-UTR-Ecto-sp8_S_contig10198:6132..61461681143117.933769-UTR-Ecto-sp8_S_contig10198:6132..6146Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10198 6133..6146 +
1681143117.9488153-UTR-Ecto-sp8_S_contig10198:6536..68701681143117.9488153-UTR-Ecto-sp8_S_contig10198:6536..6870Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10198 6537..6870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.9414272-CDS-Ecto-sp8_S_contig10198:6146..65361681143117.9414272-CDS-Ecto-sp8_S_contig10198:6146..6536Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10198 6147..6536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10198.323.1prot_Ecto-sp8_S_contig10198.323.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10198 6147..6536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10198.323.1

>prot_Ecto-sp8_S_contig10198.323.1 ID=prot_Ecto-sp8_S_contig10198.323.1|Name=mRNA_Ecto-sp8_S_contig10198.323.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MTSNHPPTTQKRYFTCASFFRETIDGRKKRRRNCAQVYASKISSLQYKQT
PSPNLHAGMTVPFGKRHERLHRRHHILGRPCVKNTATTSEGRPLTSDSPH
GSETTHTETTLRAKKLLSIPQRNTENTRH*
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mRNA from alignment at Ecto-sp8_S_contig10198:6133..6870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10198.323.1 ID=mRNA_Ecto-sp8_S_contig10198.323.1|Name=mRNA_Ecto-sp8_S_contig10198.323.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=738bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10198:6133..6870+ (Ectocarpus species8 EcLAC_412)
CTGCCCAAGAATACATGACGAGCAACCATCCTCCAACCACACAAAAGCGA
TACTTTACGTGTGCCTCCTTTTTTCGTGAGACCATCGACGGCCGTAAGAA
ACGAAGGAGAAATTGTGCACAAGTTTACGCGTCGAAAATTTCAAGCTTAC
AATACAAGCAAACACCGAGCCCGAACCTACATGCGGGAATGACCGTCCCA
TTCGGAAAGCGACACGAACGCCTTCACCGCCGTCATCACATACTTGGACG
ACCATGCGTGAAAAATACAGCAACGACATCAGAGGGACGTCCGCTTACTT
CAGATTCACCCCATGGCAGCGAAACGACACATACAGAAACGACACTACGA
GCAAAAAAGCTGCTCTCTATCCCACAAAGAAACACGGAAAACACGAGACA
CTGAAAACAACTTCCGAGAACAAAAGTTGCTGACACGTAAGAATACACCA
TGATGCCCCCTTTTTCGCTCGGCCTTTTCTCTGTCCCGTGTTTTTACTCG
CGGTAGGTGCGCACAGGGGCAGGCGGCGGGGGGGGGGCGGGTATCGACAA
ATAAATGCTGTCTTGTAAAGCCGGCTCCCATGCAGAGGCCCTCCCACGAG
TTGACGGCAGCCCTGTTGATCATCATACTCACACCGCACGCGCACGCTCG
TGCATGCAACGAAGAGGAGCCTGGTGGCGGTGGCCGTGCCTCCATTCGCC
GTCCCCCAGGCCGCTCAGCAACGCGCCGGCTTCCACCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10198:6133..6870+

>mRNA_Ecto-sp8_S_contig10198.323.1 ID=mRNA_Ecto-sp8_S_contig10198.323.1|Name=mRNA_Ecto-sp8_S_contig10198.323.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10198:6133..6870+ (Ectocarpus species8 EcLAC_412)
ATGACGAGCAACCATCCTCCAACCACACAAAAGCGATACTTTACGTGTGC
CTCCTTTTTTCGTGAGACCATCGACGGCCGTAAGAAACGAAGGAGAAATT
GTGCACAAGTTTACGCGTCGAAAATTTCAAGCTTACAATACAAGCAAACA
CCGAGCCCGAACCTACATGCGGGAATGACCGTCCCATTCGGAAAGCGACA
CGAACGCCTTCACCGCCGTCATCACATACTTGGACGACCATGCGTGAAAA
ATACAGCAACGACATCAGAGGGACGTCCGCTTACTTCAGATTCACCCCAT
GGCAGCGAAACGACACATACAGAAACGACACTACGAGCAAAAAAGCTGCT
CTCTATCCCACAAAGAAACACGGAAAACACGAGACACTGA
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