mRNA_Ecto-sp8_S_contig101979.322.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101979.322.1
Unique NamemRNA_Ecto-sp8_S_contig101979.322.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: UPI001ED9DE6D (HEAT repeat domain-containing protein n=1 Tax=Anaerosalibacter bizertensis TaxID=932217 RepID=UPI001ED9DE6D)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQLVSHGVLG 189
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QLVS    G
Sbjct:   35 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLVSEEAWG 97
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BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A6J0J8Y0_9PASS (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Lepidothrix coronata TaxID=321398 RepID=A0A6J0J8Y0_9PASS)

HSP 1 Score: 81.3 bits (199), Expect = 6.130e-17
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQLVSHGVLG 189
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QLV  G LG
Sbjct:  192 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLVRLGALG 254
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BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A401PP40_SCYTO (Uncharacterized protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PP40_SCYTO)

HSP 1 Score: 78.2 bits (191), Expect = 1.920e-16
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQLVS 174
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QLVS
Sbjct:  135 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLVS 192
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: UPI000B3E3EA3 (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Numida meleagris TaxID=8996 RepID=UPI000B3E3EA3)

HSP 1 Score: 78.2 bits (191), Expect = 5.830e-16
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQLVS 174
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QLVS
Sbjct:   89 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLVS 146
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BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A8B9W0I3_9AVES (Uncharacterized protein n=1 Tax=Anas zonorhyncha TaxID=75864 RepID=A0A8B9W0I3_9AVES)

HSP 1 Score: 78.6 bits (192), Expect = 6.290e-16
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQLVSHG 180
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QLV  G
Sbjct:  229 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLVGTG 288
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A8B7JU88_9AVES (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Apteryx mantelli mantelli TaxID=202946 RepID=A0A8B7JU88_9AVES)

HSP 1 Score: 74.7 bits (182), Expect = 7.350e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQL 168
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QL
Sbjct:   31 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 86
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A7R9ZAE3_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9ZAE3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.120e-15
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    7 RLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQL 168
            RLNIIS L A+N VIGV LLS SLLPAI+DLAED KWR+RLAII+H P+LA QL
Sbjct:    1 RLNIISSLSALNEVIGVDLLSQSLLPAILDLAEDGKWRIRLAIIQHIPLLAKQL 54
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BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A1V4JV39_PATFA (Uncharacterized protein n=2 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JV39_PATFA)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-15
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQL 168
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QL
Sbjct:   44 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A8C0F5A6_BUBBB (Protein phosphatase 2 scaffold subunit Aalpha n=1 Tax=Bubo bubo TaxID=30461 RepID=A0A8C0F5A6_BUBBB)

HSP 1 Score: 78.2 bits (191), Expect = 1.820e-15
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQLVSHGVLG 189
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QLV  G  G
Sbjct:  262 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLVRLGGAG 324
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Match: A0A2G9RED8_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RED8_LITCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.960e-15
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQL 168
            +VRLNIIS L  VN VIG++ LS SLLPAIV+LAED KWRVRLAIIE+ P+LA QL
Sbjct:  101 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDTKWRVRLAIIEYMPLLAGQL 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101979.322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001ED9DE6D1.150e-1769.84HEAT repeat domain-containing protein n=1 Tax=Anae... [more]
A0A6J0J8Y0_9PASS6.130e-1771.43serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A401PP40_SCYTO1.920e-1674.14Uncharacterized protein n=1 Tax=Scyliorhinus toraz... [more]
UPI000B3E3EA35.830e-1674.14serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A8B9W0I3_9AVES6.290e-1671.67Uncharacterized protein n=1 Tax=Anas zonorhyncha T... [more]
A0A8B7JU88_9AVES7.350e-1673.21serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A7R9ZAE3_9STRA1.120e-1575.93Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
A0A1V4JV39_PATFA1.390e-1573.21Uncharacterized protein n=2 Tax=Patagioenas fascia... [more]
A0A8C0F5A6_BUBBB1.820e-1569.84Protein phosphatase 2 scaffold subunit Aalpha n=1 ... [more]
A0A2G9RED8_LITCT1.960e-1573.21Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101979contigEcto-sp8_S_contig101979:339..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start0
Seed ortholog score74.3
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog7159.AAEL006977-PA
Preferred namePp2A-29B
Model size189
KEGG koko:K03456
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000159,GO:0000226,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007098,GO:0007099,GO:0008150,GO:0008152,GO:0008287,GO:0009056,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010921,GO:0015630,GO:0016043,GO:0016311,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022402,GO:0022607,GO:0023051,GO:0023057,GO:0030234,GO:0031023,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0035330,GO:0035331,GO:0036211,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043666,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046626,GO:0046627,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051225,GO:0051246,GO:0051298,GO:0051336,GO:0060255,GO:0061919,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0098534,GO:0098772,GO:1900076,GO:1900077,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903293
Exons1
EggNOG free text desc.Serine threonine protein phosphatase 2a regulatory subunit a
EggNOG OGs38DRM@33154,3B9UG@33208,3CXII@33213,3SIDY@50557,41V4Z@6656,44X02@7147,45F1X@7148,KOG0211@1,KOG0211@2759
Cds size189
COG Functional cat.T
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.9098592-CDS-Ecto-sp8_S_contig101979:338..5271681143117.9098592-CDS-Ecto-sp8_S_contig101979:338..527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101979 339..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101979.322.1prot_Ecto-sp8_S_contig101979.322.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101979 339..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101979.322.1

>prot_Ecto-sp8_S_contig101979.322.1 ID=prot_Ecto-sp8_S_contig101979.322.1|Name=mRNA_Ecto-sp8_S_contig101979.322.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
QVRLNIISGLQAVNGVIGVQLLSASLLPAIVDLAEDKKWRVRLAIIEHTP
VLAIQLVSHGVLG
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mRNA from alignment at Ecto-sp8_S_contig101979:339..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101979.322.1 ID=mRNA_Ecto-sp8_S_contig101979.322.1|Name=mRNA_Ecto-sp8_S_contig101979.322.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101979:339..527- (Ectocarpus species8 EcLAC_412)
CAGGTTCGGCTGAACATCATCTCGGGTTTGCAAGCGGTGAACGGCGTGAT
CGGCGTCCAGCTGTTGAGCGCGTCGCTGTTGCCAGCGATTGTTGACCTGG
CGGAAGACAAGAAGTGGCGGGTGAGGCTCGCCATCATCGAGCACACGCCG
GTTCTTGCCATCCAGCTGGTGAGCCACGGAGTGTTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101979:339..527-

>mRNA_Ecto-sp8_S_contig101979.322.1 ID=mRNA_Ecto-sp8_S_contig101979.322.1|Name=mRNA_Ecto-sp8_S_contig101979.322.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101979:339..527- (Ectocarpus species8 EcLAC_412)
CAGGTTCGGCTGAACATCATCTCGGGTTTGCAAGCGGTGAACGGCGTGAT
CGGCGTCCAGCTGTTGAGCGCGTCGCTGTTGCCAGCGATTGTTGACCTGG
CGGAAGACAAGAAGTGGCGGGTGAGGCTCGCCATCATCGAGCACACGCCG
GTTCTTGCCATCCAGCTGGTGAGCCACGGAGTGTTGGGG
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