mRNA_Ecto-sp8_S_contig101978.321.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101978.321.1
Unique NamemRNA_Ecto-sp8_S_contig101978.321.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: R9TE18_ACAPC (40S ribosomal protein S7 n=3 Tax=Calanoida TaxID=6833 RepID=R9TE18_ACAPC)

HSP 1 Score: 229 bits (585), Expect = 5.800e-75
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 384
            LKA LRELH+TA KEVDC+GGKKA+VIFVPVPQLK FQKIQ+RLVRELEKKFSGKHVVFIAQRRIL KPTRKANKLKQKRPRSRTL +VHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDK+QQT
Sbjct:   36 LKASLRELHVTAVKEVDCTGGKKAVVIFVPVPQLKAFQKIQSRLVRELEKKFSGKHVVFIAQRRILAKPTRKANKLKQKRPRSRTLTSVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKSQQT 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A0U2KDL2_9MAXI (40S ribosomal protein S7 n=3 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2KDL2_9MAXI)

HSP 1 Score: 226 bits (577), Expect = 9.570e-74
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 384
            LKAQLREL+ITAAKEVDC+GGKKAI IFVPVPQ K FQKIQTRLVRE+EKKFSGKHVVFIAQRRIL KPTRK+NKLKQKRPRSRTL AVHN+IL+DLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT
Sbjct:   36 LKAQLRELNITAAKEVDCAGGKKAIAIFVPVPQQKAFQKIQTRLVREVEKKFSGKHVVFIAQRRILAKPTRKSNKLKQKRPRSRTLTAVHNAILEDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A0U2UPI3_9MAXI (40S ribosomal protein S7 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2UPI3_9MAXI)

HSP 1 Score: 226 bits (576), Expect = 1.360e-73
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 384
            LK  LRELHITA KEVDC GGKKAIVIFVPVPQLK FQKIQ RLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRP SRTL AVHN+ILDDLVYPAEIVGKRIRIRLDG+RLFKVHLDKT++T
Sbjct:   36 LKGDLRELHITAVKEVDCPGGKKAIVIFVPVPQLKAFQKIQARLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRPMSRTLTAVHNAILDDLVYPAEIVGKRIRIRLDGTRLFKVHLDKTEKT 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A553N7S6_TIGCA (40S ribosomal protein S7 n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N7S6_TIGCA)

HSP 1 Score: 223 bits (567), Expect = 3.190e-72
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 384
            LKAQLRELHITAAKEV+  GGKKAIVIFVPVPQLK FQK+Q+RLVRELEKKFSG+HVV IAQRRILPKPTRKANKLKQKRPRSRTL AVH++ILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT
Sbjct:   37 LKAQLRELHITAAKEVEV-GGKKAIVIFVPVPQLKAFQKVQSRLVRELEKKFSGRHVVLIAQRRILPKPTRKANKLKQKRPRSRTLMAVHSAILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: B7TJH4_ARTSF (40S ribosomal protein S7 n=1 Tax=Artemia franciscana TaxID=6661 RepID=B7TJH4_ARTSF)

HSP 1 Score: 209 bits (531), Expect = 9.280e-67
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKANKLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 384
            LKAQLR+LHITAA+EVD   GKKAI++FVPVPQLK FQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRK    KQKRPRSRTL AVH +IL+DLV PAEIVGKRIRI+LDGSR+ KVHLDK QQT
Sbjct:   35 LKAQLRDLHITAAREVDVGSGKKAIIVFVPVPQLKAFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKTKAQKQKRPRSRTLMAVHEAILEDLVNPAEIVGKRIRIKLDGSRIMKVHLDKAQQT 162
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A6I8QX34_XENTR (40S ribosomal protein S7 n=14 Tax=Euteleostomi TaxID=117571 RepID=A0A6I8QX34_XENTR)

HSP 1 Score: 205 bits (521), Expect = 2.230e-65
Identity = 106/128 (82.81%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKAN-KLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQ 381
            LKAQLREL+ITAAKE++  GG+KAI+IFVPVPQLK FQKIQ RLVRELEKKFSGKHVVFIAQRRILPKPTRK+  K KQKRPRSRTL AVH++IL+DLVYP+EIVGKRIR++LDGSRL KVHLDK QQ
Sbjct:   36 LKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDGSRLIKVHLDKAQQ 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A7R8X1K5_9CRUS (40S ribosomal protein S7 n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X1K5_9CRUS)

HSP 1 Score: 204 bits (520), Expect = 3.170e-65
Identity = 108/129 (83.72%), Postives = 120/129 (93.02%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKAN-KLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQT 384
            LKAQLREL++TAAKE+D +G KKAI+IFVPVPQL+ +QKIQTRLVRELEKKFSGKHVVF+AQRRILPKPTRK   K KQKRPRSRTL AVH++IL+DLV+PAEIVGKRIRIRLDGSRL KVHLDKTQQT
Sbjct:   36 LKAQLRELYVTAAKEIDVNG-KKAIIIFVPVPQLRMYQKIQTRLVRELEKKFSGKHVVFVAQRRILPKPTRKTKFKNKQKRPRSRTLTAVHDAILEDLVFPAEIVGKRIRIRLDGSRLIKVHLDKTQQT 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A803SV63_ANOCA (40S ribosomal protein S7 n=2 Tax=Toxicofera TaxID=1329911 RepID=A0A803SV63_ANOCA)

HSP 1 Score: 205 bits (521), Expect = 3.290e-65
Identity = 106/128 (82.81%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKAN-KLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQ 381
            LKAQLREL+ITAAKE++ SGG+KAI+IFVPVPQLK FQKIQ RLVRELEKKFSGKHVVFIAQRRILPKPTRK+  K KQKRPRSRTL AVH++IL+DLV+P+EIVGKRIR++LDGSRL KVHLDK QQ
Sbjct:   36 LKAQLRELNITAAKEIEVSGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQ 163
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: A0A218VDH4_9PASE (40S ribosomal protein S7 n=1 Tax=Lonchura striata domestica TaxID=299123 RepID=A0A218VDH4_9PASE)

HSP 1 Score: 203 bits (517), Expect = 3.530e-65
Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKAN-KLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQ 381
            LKAQLREL+ITAAKE++  GG+KAI+IFVPVPQLK FQKIQ RLVRELEKKFSGKHVVFIAQRRILPKPTRK+  K KQKRPRSRTL AVH++IL+DLV+P+EIVGKRIR++LDGSRL KVHLDK QQ
Sbjct:    5 LKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQ 132
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BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Match: I7G2F0_MACFA (40S ribosomal protein S7 n=2 Tax=Amniota TaxID=32524 RepID=I7G2F0_MACFA)

HSP 1 Score: 203 bits (517), Expect = 6.140e-65
Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKAN-KLKQKRPRSRTLQAVHNSILDDLVYPAEIVGKRIRIRLDGSRLFKVHLDKTQQ 381
            LKAQLREL+ITAAKE++  GG+KAI+IFVPVPQLK FQKIQ RLVRELEKKFSGKHVVFIAQRRILPKPTRK+  K KQKRPRSRTL AVH++IL+DLV+P+EIVGKRIR++LDGSRL KVHLDK QQ
Sbjct:   36 LKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQ 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101978.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R9TE18_ACAPC5.800e-7591.4140S ribosomal protein S7 n=3 Tax=Calanoida TaxID=6... [more]
A0A0U2KDL2_9MAXI9.570e-7491.4140S ribosomal protein S7 n=3 Tax=Pseudodiaptomus p... [more]
A0A0U2UPI3_9MAXI1.360e-7390.6340S ribosomal protein S7 n=1 Tax=Pseudodiaptomus p... [more]
A0A553N7S6_TIGCA3.190e-7291.4140S ribosomal protein S7 n=1 Tax=Tigriopus califor... [more]
B7TJH4_ARTSF9.280e-6783.5940S ribosomal protein S7 n=1 Tax=Artemia francisca... [more]
A0A6I8QX34_XENTR2.230e-6582.8140S ribosomal protein S7 n=14 Tax=Euteleostomi Tax... [more]
A0A7R8X1K5_9CRUS3.170e-6583.7240S ribosomal protein S7 n=1 Tax=Darwinula stevens... [more]
A0A803SV63_ANOCA3.290e-6582.8140S ribosomal protein S7 n=2 Tax=Toxicofera TaxID=... [more]
A0A218VDH4_9PASE3.530e-6582.0340S ribosomal protein S7 n=1 Tax=Lonchura striata ... [more]
I7G2F0_MACFA6.140e-6582.0340S ribosomal protein S7 n=2 Tax=Amniota TaxID=325... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101978contigEcto-sp8_S_contig101978:143..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score205.7
Seed ortholog evalue1.3e-50
Seed eggNOG ortholog28377.ENSACAP00000016629
Preferred nameRPS7
Model size384
KEGG koko:K02993
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030097,GO:0030684,GO:0030686,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.cytoplasmic translation
EggNOG OGs39ERP@33154,3B9CB@33208,3CWTF@33213,484W9@7711,48YQV@7742,KOG3320@1,KOG3320@2759
Cds size384
COG Functional cat.J
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.8811786-CDS-Ecto-sp8_S_contig101978:142..5261681143117.8811786-CDS-Ecto-sp8_S_contig101978:142..526Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101978 143..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101978.321.1prot_Ecto-sp8_S_contig101978.321.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101978 143..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101978.321.1

>prot_Ecto-sp8_S_contig101978.321.1 ID=prot_Ecto-sp8_S_contig101978.321.1|Name=mRNA_Ecto-sp8_S_contig101978.321.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=128bp
LKAQLRELHITAAKEVDCSGGKKAIVIFVPVPQLKQFQKIQTRLVRELEK
KFSGKHVVFIAQRRILPKPTRKANKLKQKRPRSRTLQAVHNSILDDLVYP
AEIVGKRIRIRLDGSRLFKVHLDKTQQT
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mRNA from alignment at Ecto-sp8_S_contig101978:143..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101978.321.1 ID=mRNA_Ecto-sp8_S_contig101978.321.1|Name=mRNA_Ecto-sp8_S_contig101978.321.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=384bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101978:143..526+ (Ectocarpus species8 EcLAC_412)
CTTAAGGCTCAGCTGAGAGAACTGCACATTACTGCAGCCAAGGAGGTTGA
CTGCAGTGGAGGCAAGAAGGCCATCGTCATCTTCGTGCCCGTGCCCCAGC
TTAAGCAGTTCCAGAAGATCCAGACCAGATTGGTCAGAGAGCTTGAGAAG
AAGTTCAGCGGCAAGCATGTGGTCTTCATCGCCCAGAGGAGAATCCTGCC
CAAGCCTACAAGGAAGGCCAACAAGCTGAAGCAGAAGAGACCCAGGTCCA
GAACTCTCCAGGCTGTCCACAACTCCATCCTGGATGATCTTGTCTACCCA
GCTGAGATTGTTGGCAAGAGGATCAGGATCCGTCTTGATGGTTCCCGCCT
GTTCAAGGTCCACCTGGACAAGACCCAGCAGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101978:143..526+

>mRNA_Ecto-sp8_S_contig101978.321.1 ID=mRNA_Ecto-sp8_S_contig101978.321.1|Name=mRNA_Ecto-sp8_S_contig101978.321.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101978:143..526+ (Ectocarpus species8 EcLAC_412)
CTTAAGGCTCAGCTGAGAGAACTGCACATTACTGCAGCCAAGGAGGTTGA
CTGCAGTGGAGGCAAGAAGGCCATCGTCATCTTCGTGCCCGTGCCCCAGC
TTAAGCAGTTCCAGAAGATCCAGACCAGATTGGTCAGAGAGCTTGAGAAG
AAGTTCAGCGGCAAGCATGTGGTCTTCATCGCCCAGAGGAGAATCCTGCC
CAAGCCTACAAGGAAGGCCAACAAGCTGAAGCAGAAGAGACCCAGGTCCA
GAACTCTCCAGGCTGTCCACAACTCCATCCTGGATGATCTTGTCTACCCA
GCTGAGATTGTTGGCAAGAGGATCAGGATCCGTCTTGATGGTTCCCGCCT
GTTCAAGGTCCACCTGGACAAGACCCAGCAGACC
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