mRNA_Ecto-sp8_S_contig10194.317.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10194.317.1
Unique NamemRNA_Ecto-sp8_S_contig10194.317.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: D8LBA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA1_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 4.680e-110
Identity = 224/265 (84.53%), Postives = 227/265 (85.66%), Query Frame = 1
Query:    1 QVATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQDIHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQRVAR 795
            +VA R+KVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQDIHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANER+RAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREA     XXXXXXXXXX          L                    XX RRTKAALYLGRAAAAVEEKNFQQML GAEREAERRQRVAR
Sbjct:  399 EVAARVKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQDIHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERQRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAARERKXXXXXXXXXXRIQRERNSIALMEELERKRLAREAEMAVLAEXXXRRTKAALYLGRAAAAVEEKNFQQMLGGAEREAERRQRVAR 663          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A835ZFS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.290e-30
Identity = 115/264 (43.56%), Postives = 156/264 (59.09%), Query Frame = 1
Query:    1 QVATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQDIHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQRVA 792
            ++A  +K EK +M +QR AEEEL + +N+++VK+VTEVR TAPK+AV R L +++  KE L  +LEE R  R+ EA  E  + +E VL+L++ ++H   VKVF+PTES+GL LLNEMSL ET+ RL  N+ +  + E+ RRR+IL  +A ++ADL++ + SI   R AA       XXXXXXXXXXXXX            L                        R KAALYLG AAA    +  Q +L GAER    RQ +A
Sbjct:  414 ELAQCIKAEKAVMAQQRRAEEELKLMINKQVVKQVTEVRGTAPKEAVARTLQQRRQAKEHLTAQLEEGRRRRQWEASAEFKEVQERVLRLRQDEVHSVRVKVFNPTESSGLMLLNEMSLAETRERLAMNKMRERQEEAERRRQILADKAAKQADLQKAIASISEAREAAXXXXXXXXXXXXXXXXXXXXRQKLPLQAKSAELLETLEAKRDRRQAELQSLEQQEAERQKAALYLGAAAAGSSARAMQDLLKGAERAERNRQALA 677          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A7S2SJP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJP9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.090e-27
Identity = 134/315 (42.54%), Postives = 206/315 (65.40%), Query Frame = 1
Query:    4 VATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKE-QDIHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQRVAR*AAEKYQKVTREDRRQVEENTRKREARKQRLYKKKQAEFDAARRRLMEEQ 945
            +A+ +K E + M++Q+  E+ +   MN++LV+EV EVR  AP++A  +V++EK+   E L +E E+L A + RE    + +KK+ VL+L+   ++H  HVKVFDPT+SAG+GLL+EMSLVE + RL  N+ +  E E+ +R EIL  +  +  +L++R++++   R+AA  AN++A           XXXXXXXXXXXX  L  XXXXXXXXXXXXXXXXXXXX  R  +  + G+   A EE +F+++L GAERE  +RQ  A+ A++ Y++     RR V+    KRE +K+++  +K  E +  R+ L+E++
Sbjct:  397 LASHVKAESNEMKKQKHMEDAMLHMMNRQLVREVGEVRRHAPREAEAKVVEEKRARSEALREEKEKLLAVKLREDARVQEEKKDRVLQLRALAEVHPEHVKVFDPTQSAGIGLLDEMSLVEMRERLAINKARATETEAKKRAEILDVKGVKRHELQKRMDNVHRIRSAAAAANQQARAKVRAEEAVEXXXXXXXXXXXXVTLVEXXXXXXXXXXXXXXXXXXXXXXRKASLAFSGQGTYAAEEMHFEELLKGAEREVYKRQNEAQRASKVYEETKATHRRMVQRTAAKREIQKRKVNAEKAEEIEQRRQALVEKE 711          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A6G0XDN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDN5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.240e-14
Identity = 77/262 (29.39%), Postives = 129/262 (49.24%), Query Frame = 1
Query:    1 QVATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQD-IHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQ 783
            QVA +MK+      E+R  EE+     N+ +  E+ +VR  AP++A +R+  E +  ++ +   LE+ RA +  +   E+ ++++ + +++  D +H  HV +FDPTES+  GLL EMSLVE + RLE    ++AE E+ +R +IL ++ ++EADLK R+ +I   R  A  +NR +                         L                      +      ++LG A   +EE++F Q   GAER+A  RQ
Sbjct:  384 QVAIQMKLVSKENDEKRRLEEQQIDMANRMVATEIKQVRQVAPREAEERIKLENQKKRDAVHALLEQERARKAEQDAIEQAQREDLIRQIRALDRVHREHVAIFDPTESSNCGLLEEMSLVELRERLELRRIEQAEEEAQKREQILGEKKEKEADLKARVSNISRIRQLAAVSNRTSRERRKQLEREKAEREKQLRDEGNLKLAQKMAAQRKERDAEFQRLKEEEQLIANKRMFLGAAKNMLEERHFMQQTMGAERQASDRQ 645          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A024UCP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCP7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.320e-13
Identity = 104/308 (33.77%), Postives = 158/308 (51.30%), Query Frame = 1
Query:    4 VATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQD-IHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQRVAR*AAEKYQKVTREDRRQVEENTRKREARKQRLYKKKQA-EFDAA 921
            VA +MK+     +E+R  EE      ++++  E+   R +AP++A  RV  EK+  +E +   LE+ RA +  +   E+ ++++ + +++  D +H  HV VFDPTESA LGLL+EMSLVE + RL+  + + AE E+ RR  IL ++ ++E DLK R+ +I   R  A  ANR +   XXXXXXXXX             L                      E      ++LG A   +E ++F Q   GAER+A  RQ       E  QK  R     VE  T++ E + ++ Y+ K+A E DAA
Sbjct:  388 VANQMKLVSKENEEKRRLEEMEIDQAHRQVALEIKLTRESAPREAEDRVKAEKQKQREAVNALLEQERARKAAQDAIEQAQREDLIRQIRALDRVHREHVTVFDPTESANLGLLDEMSLVELRERLQLRKVEEAELEAQRRELILQEKKEKELDLKARVSNISRIRQLAASANRSSRERXXXXXXXXXDQEKKMRDEGNVKLAQKMAAQRAERDAEFQRLKEEGELIANKRMFLGAAKNMLEMRHFMQQTMGAERQASNRQ-------EAVQKEAR-----VEAQTKETEKKMRQTYRHKKAIEHDAA 683          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: F0YGQ3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGQ3_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 5.550e-13
Identity = 83/263 (31.56%), Postives = 123/263 (46.77%), Query Frame = 1
Query:    1 QVATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLK-EQDIHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQR 786
            Q+A R   E   MQ+QR+ E E+ +F  + LV EV E R TAPK AV+ VL+ K   ++ +  ++E     R+ E         E V +LK EQ +H  H   FDPT++ GLGLL+EMSLVE + RL  N ++  E    +R+E+++ R  +   L ER+++I+  R AA + N +                          L                      ER  K  L+ G      E+K  +++L GAER A+  QR
Sbjct: 2047 QLAARGVEEGRAMQKQRQLETEMTLFKKKHLVGEVKEERETAPKLAVESVLERKNQIRKGVQHDMETRLKHRQDENDARAKALAEHVKRLKAEQSVHRDHTNFFDPTDTVGLGLLDEMSLVEMQERLTRNRKRDQENCEQKRKELVVARNAKRDRLAERVKNIKKVREAAAEKNHKTSQYQSQCAADLKTAIQHREERLLLDLVEELEIKRTVLSSYREKLRDEAERTKKDQLFAGAGEQLKEKKAHEELLKGAERMAKNTQR 2309          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A1V9ZJ38_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJ38_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.750e-13
Identity = 77/249 (30.92%), Postives = 121/249 (48.59%), Query Frame = 1
Query:   43 EQREAEEELAVFMN-QRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQD-IHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQ 783
            EQ+  EEE ++  + Q+   E+ +VR  AP++A +RV  E    +E+L   LE  R  +  +   E+ ++++ + +++  D +H  HV VFDPTES+  GLL EMSLVE + RL+  + + AE E+ RR +IL  +  +E DLK R+++I   R +A  ANR A                         L                      E      ++LG A   +EE++F +   GAER+A  RQ
Sbjct:  400 EQKRREEEASINQHYQQAAVEIKQVREVAPREAEERVRVENARKREELNAMLEAERVRKAEQDALEQAQREDLIRQIRALDRVHREHVAVFDPTESSNYGLLEEMSLVELRERLQMKKVQEAEWEAERREQILESKKDKEEDLKSRVQNIARIRQSAAVANRAARTRRKQLEQEKLEREKKLRDEGNVKLAAKMAKQREEREAEARRLREEEELIANKRMFLGAAKNMLEERHFMEQSLGAERQAANRQ 648          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: W4FJS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJS5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.830e-13
Identity = 79/261 (30.27%), Postives = 123/261 (47.13%), Query Frame = 1
Query:    4 VATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQD-IHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQ 783
            VA +MK+      E+R  EE      N++   E+   R  AP++A +RV  +    +E +   LE  RA +  +   ++ ++++ + +++  D +H  HV +FDPTESA LGLL+EMSLVE + RL+  + + AE E+ RR  IL ++ +READLK R+ +I   R  A  ANR +                         L                      E      ++LG A   +E ++F Q   GAER+A  RQ
Sbjct:  388 VANQMKLVSKENDERRRLEEMAIDDSNRQGALEIKLTREVAPREAEERVKSDNHRKREAVNAMLETERARKAAQDAIDQAQREDLIRQIRALDRVHREHVAIFDPTESANLGLLDEMSLVELRERLQLRKVEEAELEAQRRELILQEKKEREADLKSRVSNISRIRQLAASANRTSRDRRKQLEQDKRDQDKHMRDQGNLKLAQKMAAQRADRDAEFQRLKEEGELVANKRMFLGAAKNMLEVRHFMQQTMGAERQASNRQ 648          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A8K1FP63_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FP63_PYTOL)

HSP 1 Score: 79.3 bits (194), Expect = 1.400e-12
Identity = 89/267 (33.33%), Postives = 143/267 (53.56%), Query Frame = 1
Query:    1 QVATRMK-VEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKE---EELKKKEAVLKLKEQD-IHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQR 786
            +VA +MK V KDL  ++   E++L     Q++  ++ ++R  AP++A +R+ +EK   +E+L    E L A R+R+A E   E+ ++++ + +++  D +H  HV VFDPTE+  LGLL EMSL E K RL   + ++   E ARR  IL  + +++A L+E+++++   R AA  AN              XXXXXXXX      L                      E   K  ++LG A + +EE +F Q+  GAER+ ++RQR
Sbjct:  390 EVAIQMKAVSKDLEAQRMMEEQQLEERYRQQM-SDIKKIRDVAPREAEERLKEEKHKAREELN---EFLAAERERKAAEDALEQAQREDLIRQIRALDRVHREHVVVFDPTETVQLGLLEEMSLAELKERLVVRKAEQQAWEDARRENILTDKQEKDAALEEKVKTLSKLRNAAATANATQRSRKKAMEEAKXXXXXXXXRQGNLQLAEKLTAQRAAREAQVEKLKQEAEEIAKKRMFLGAAKSMLEESHFDQLKRGAERQVQQRQR 652          
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Match: A0A067C6L4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C6L4_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 7.110e-12
Identity = 82/267 (30.71%), Postives = 129/267 (48.31%), Query Frame = 1
Query:    1 QVATRMKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKKCGKEKLCKELEELRAARKREAKEEEL---KKKEAVLKLKEQD-IHEHHVKVFDPTESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADLKERLESIQARRAAAKQANREAXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXERRTKAALYLGRAAAAVEEKNFQQMLSGAEREAERRQRV 789
            +VA +MK+      E+R  EE       Q++  ++ + R  AP++A +RV  E    +E+L   LE   A R+R+A+++ +   ++++ + +++  D +H  HV VFDPTES+  GLL EMSLVE + RL+  + + AE E+ RR  IL  +  +E DLK R+++I   R +A  ANR A                         L                      E      ++LG A   +EE++F Q   GAEREA  +QR 
Sbjct:  217 EVAIQMKLVARENDEKRRQEELELNQQYQQIATDIKQTREVAPREAEERVRLENARKREELNAMLE---AERQRKAEQDAIDQAQREDLIRQIRALDRVHREHVAVFDPTESSNYGLLEEMSLVELRERLQMKKVQEAEWEAERREHILESKKDKEEDLKSRVQNIARIRQSAATANRAARARKKQLELEKLEKEKKMRDEGNLKLAAKMTKQRAEREADARRLRDEEELIANKRMFLGAAKNMLEERHFMQQSLGAEREATIKQRA 480          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10194.317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA1_ECTSI4.680e-11084.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFS9_9STRA2.290e-3043.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SJP9_9STRA3.090e-2742.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XDN5_9STRA2.240e-1429.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UCP7_9STRA1.320e-1333.77Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
F0YGQ3_AURAN5.550e-1331.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1V9ZJ38_9STRA5.750e-1330.92Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4FJS5_9STRA7.830e-1330.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8K1FP63_PYTOL1.400e-1233.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067C6L4_SAPPC7.110e-1230.71Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10194contigEcto-sp8_S_contig10194:863..6930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score340.5
Seed ortholog evalue6.9e-91
Seed eggNOG ortholog2880.D8LBA1
Preferred nameCFAP99
Model size996
Hectar predicted targeting categoryother localisation
Exons9
EggNOG OGs2CN4V@1,2QTX0@2759
Cds size783
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10194.317.1prot_Ecto-sp8_S_contig10194.317.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10194 878..6241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.4738777-UTR-Ecto-sp8_S_contig10194:862..8771681143117.4738777-UTR-Ecto-sp8_S_contig10194:862..877Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10194 863..877 +
1681143117.5745428-UTR-Ecto-sp8_S_contig10194:6241..63131681143117.5745428-UTR-Ecto-sp8_S_contig10194:6241..6313Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10194 6242..6313 +
1681143117.584398-UTR-Ecto-sp8_S_contig10194:6804..69301681143117.584398-UTR-Ecto-sp8_S_contig10194:6804..6930Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10194 6805..6930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.485302-CDS-Ecto-sp8_S_contig10194:877..9641681143117.485302-CDS-Ecto-sp8_S_contig10194:877..964Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 878..964 +
1681143117.495234-CDS-Ecto-sp8_S_contig10194:1263..13821681143117.495234-CDS-Ecto-sp8_S_contig10194:1263..1382Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 1264..1382 +
1681143117.5088253-CDS-Ecto-sp8_S_contig10194:1881..19631681143117.5088253-CDS-Ecto-sp8_S_contig10194:1881..1963Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 1882..1963 +
1681143117.521707-CDS-Ecto-sp8_S_contig10194:2451..26211681143117.521707-CDS-Ecto-sp8_S_contig10194:2451..2621Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 2452..2621 +
1681143117.532593-CDS-Ecto-sp8_S_contig10194:3678..38081681143117.532593-CDS-Ecto-sp8_S_contig10194:3678..3808Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 3679..3808 +
1681143117.5433784-CDS-Ecto-sp8_S_contig10194:5333..53991681143117.5433784-CDS-Ecto-sp8_S_contig10194:5333..5399Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 5334..5399 +
1681143117.553942-CDS-Ecto-sp8_S_contig10194:5775..59021681143117.553942-CDS-Ecto-sp8_S_contig10194:5775..5902Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 5776..5902 +
1681143117.5640988-CDS-Ecto-sp8_S_contig10194:6239..62411681143117.5640988-CDS-Ecto-sp8_S_contig10194:6239..6241Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10194 6240..6241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10194.317.1

>prot_Ecto-sp8_S_contig10194.317.1 ID=prot_Ecto-sp8_S_contig10194.317.1|Name=mRNA_Ecto-sp8_S_contig10194.317.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=261bp
MKVEKDLMQEQREAEEELAVFMNQRLVKEVTEVRSTAPKDAVQRVLDEKK
CGKEKLCKELEELRAARKREAKEEELKKKEAVLKLKEQDIHEHHVKVFDP
TESAGLGLLNEMSLVETKVRLEANERKRAEAESARRREILLQRAKREADL
KERLESIQARRAAAKQANREAARERKEREAAQAEAERMQRERNSIALMEE
LEIKRLAREAEMAVLAEEEERRTKAALYLGRAAAAVEEKNFQQMLSGAER
EAERRQRVAR*
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mRNA from alignment at Ecto-sp8_S_contig10194:863..6930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10194.317.1 ID=mRNA_Ecto-sp8_S_contig10194.317.1|Name=mRNA_Ecto-sp8_S_contig10194.317.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6068bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10194:863..6930+ (Ectocarpus species8 EcLAC_412)
CAGGTCGCCACGCGGATGAAGGTTGAGAAGGACCTGATGCAAGAACAGAG GGAGGCGGAGGAGGAGCTGGCGGTGTTCATGAACCAGAGGCTTGTCAAGG AGGTGGGGTACACAACATGAGCAAGCCAATGGCAAACCAAACAAGACGAA AACACGATAGCGAAAGCAAACTTTCCCCCTCGCCAGTGGTTCTTGTTCAG AAAGATGGGTTCGTGTTCACCGTTGTTCTTCATATGGACATGAAATAGCA GTGCACCAACACCAAATGAGCCGCAAATGGCAATGATCAACAACCGCAAT ACGTCGGGTTTTTTTCGGGAGGGCAAAGTCCAAACCTCTCTCTCTTTATA CATCTTTCTCTCTCCCGTCACCGCAAAAAAAATTCTCCTCGCGGAAGGAA GGTAACCGAGGTGCGTAGCACGGCACCGAAGGACGCCGTGCAGCGAGTTC TCGACGAAAAAAAGTGCGGCAAGGAGAAGCTGTGCAAGGAGCTGGAGGAA CTCAGAGCCGCTAGAAAGAGGTGCAAAAAAACAAGGAGTATGATGGGGAA GGGATGAGGGGGAACACATTTCAAGGGAAAACGCCCACAGAGTATAAGGG AAAACGCGCACAGGGTACATGACGATCGCGCTCACAGAGCATAGGTGATA GGATGGAGGGCCGGAAACTTCGGTTGGTTTGATTCAGTGCGCCGGACCTA TAGAAGCATAAATGTTTTTTGGTGTTGCGATAGAAACTGTTCTGGCCGCC GCCCAGCACCTCTGTCTTCCGTACGAGTCCAGCCGCAGGTTACAATACAT TCGGAACAGATACGGAAAGAGCTCAAATTTTCACGAGCAAAAGAAACAAG AAACGAAACAAAACACCCAAAGCAACGTTAAAAAACGCAATTCACTCAGA CAGGAGAAGCATTGTGTGACAGAGCAAAAGGCCGAATGTTGCTGTCTGTC TGTCCTGCTTTGATGATGGTTTTAGTCGCTGAATCAGAACCCTCCCCGAT TCACTCGTTGTTTGTGCAGGGAGGCGAAGGAGGAGGAGTTGAAGAAAAAG GAGGCGGTGCTCAAGCTCAAAGAACAGGATATACACGAGCACCACGTCAA GGTGCGACGCTGTCGCTTTTTCTTTTCTGCGTAGTCGGCTTCGCAATAGT TGTACAAGCACCGGGAGCAGTTGTCCCCCTCCCCCCCCCCCTCTTCCTTT CCTGCTGTACGTCTGTGTCCATGATCGCTTAGCCCGCAGAAAGCTGCACC AGTTCTTGAGACGCAGAAACGGGGCCATGGTGATCCTCCTGCCTAGGGGA CCCAAAAGTTAATCGTGTACATACCAACAGGATACCTTCTTGTGGCCAAA TGGCACGAATCAGATCCGCGTGGTACGCGTTTCTATCGTTTGACAAGACT CACCCCCCCTCCCCATTGGGTAACATTTTCGAGCCACTTTCGACAAGGTA GGATAAACTGGCCATCGGTGATCGATCCTGTGGGAACAATGCTCCGTCGA CGGACGCGTGGTCAATGATTTAACAATATGGCATGAAAAAAATAAGTACG CCCCCCCCCCCTCCACCCCTGCCAAATACGCCAAACAAGGTGTTCGACCC GACGGAGAGCGCCGGGCTGGGGTTGCTTAACGAGATGTCTCTGGTGGAAA CCAAGGTCCGTCTGGAGGCCAACGAGCGGAAGAGAGCGGAGGCGGAGTCG GCGAGGAGAAGAGAGATTCTCCTGCAGAGGGCCAAGCGGGAAGCCGACCT GAAAGAACGGTGGGTTGGAGGGGGGACGGGTTGTTTTTTGTGTCCTACGG CCGCGGGTGGAGGAGGGGGAGGGGGTGCTTGTGGTCGTGCATGGCGAAAG CCTGCCCAACTTGCGTAGAAGAAGCATTTCTGCAAACAGGAGGGGTAGGA AAACGGGAGGGGGTAGGAGATGAAAACAGTTTGTTTCTCACAAGTGTCCA ACAAACGTGAATTGCTGTGTCTGTGTGTTACTTCCGATTCAACCGACCAA GAGGGAGGCCGGCCTGAGAGAGGGGGAAGTCGGCCTTGGGTATGGCTAAA GCCTTCTTCTGTCGCCGATTTTGTTTGGGTGGGATTGATTGGTTGTTTAG TTGGTCTGAAAAGAACGATACTATTTCGGACACTAGCCCCACCTCGACTG TTCAGGACAACACAACACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAGCAACAACAACAACAATCGTATTGTAGCGAGGGCAGCCC AGTGCCCAAACTGCGTAGATGTTAAAACGTACATGTACCGCGTTAAAACT GAAGCGAGGTAAACGGCAAGAGCGAAGGTGGCTCCGACCAAGTTATGCCG GTAAAATTGCTTTCGCCAAAACAAGAAGTGGCAACCCATCTCGCTTACCG TAAGGATGCGAGAGATGGCACCCCCCCTAGACCGACTTTCAAAACTCGAT CTAGTTCCATATAAACATGGATGCAGAAAGAACCCGATACATATGTCTTC GAAACACCCTCGACGAGATGTTTCCAAAACCACCATTTTTGGTGTTGGCG CAATCTTCGTTGTGAAGCTATCGAGCTTTGAAACTCAGTCTAGGGGGGTT GCCATCTCTCGCCGTCCTGACATCTCCAATCGACTCCTCCGGCCGAAACC AAAACTCTCACCAAAGTTGTTTCCCTCCCTTCCTGCTAGACCAACCTTTT GCCACACGACGTATCCTTTTCCAAACCCTGCGCTCTTTTTAGTATCATCC CTCCCCCCCCCAGACACCCTCTCACCCCCGCATCAACGGTACACGACCGC GCTACCCTTCCAACAGGCTAGAGAGCATCCAGGCCAGGAGGGCGGCCGCG AAGCAGGCTAATCGTGAAGCCGCCAGGGAGCGGAAGGAGAGAGAAGCTGC CCAGGCGGAGGCCGAGCGCATGCAAAGAGAGCGCAACAGCATTGCAGTGA GTGGGGATTTTTTCAAGGCGGCCATATATCAATAGAGAGAGGTATGGGGT GTGCGGCTGACTTCTGTAGCGCAAACACGTATGGTGCTTTAATGTCCATG GTGCTGTCTTTCTTCACCGTGTCATGTGCGAATGACGTACAAAAAAGGGC TCGATACGCAAAGTGCGCCTGAAGAGGCTTTGAAAACGTTTTCCCTTATT TGATCGACCTGATAGTGGTGGAGTGCGCGGTATTATCAAGGAGGCTGAGC TTGTAGAGCAACGCAGGCCGCCAGAGGACAACAACATCTATCTCAGCACG CGTGAGCGAGGCATCTTTCTGAAAGTGTGGTTGGCAACATGCGTATCCCC AAGGTTGGCCTACCTCTCTCGCTTGCGGGGGGGGGGAGAGGACGCAGCGA AAACAACTAGAACAACATACAACGTCTGTCTGGAACTACCGTCAACACAA TTTCATAACCAGATGGGGACCCATTGGCCTCAGTTTAGCTTAAGGTGTTC GTGCGTGGAGGTAGATTGGTCGGATTGTACCTATACTGGCGGTTTCGTAT ATCGCAGATGGGAATGACCTTGAGGGACATGCTAGGAGAGACTTTGGGAT TCGAGTTGCGCCCCCTCCCTTTCGACTGGTTGTGGCCTGGCACTCCTCCT TTCTCCTCCTCTTCCTCTATGATGTCGCCCCTACGATCTAATACATACAT GTGTGGAGACCACCTTAATAAAGGTACAATCTCCCCAACGTCTGTCGAGG ACGATTCACTCTTTTCACAATGGCGTCGACGAAGAGATGTCAGAGTGTCT GCTTTTGGTTGCAAAAGACACGGGTTCACAACCCGCTGCAATGTGGAGAC CACCTTCATAAAGGTACAATCTCCCCGACGTCTGTCGAGGACGATTCACT CTTTTCACACATGCGGCTAACAACGCTCTTTGGATTCTGAAGCTCATACA ATATGGGCATATACAAACATAAGGGACCGAATAACGTGATCGTGGTAGGT CGGGGTGAGCGACGAAGGATGAACGCTACTACTGCATGCACGAACTGAGT AAAATCACGAGCTTTGTGCTCCTATTTATTTAGCACGAGCTTAGCGCTGC TCAACAAACCCCGCCTCTATCGCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCACCCCCCCCCACCCCCCCCCCCCCCTGCTACCGACCCC GGACGCNNNNNNNNNNCGACATGAACCAGAAAGTCCCGGTTTTTTGCGCC TTTTTTTTTTAAAAATACCTGGCCGGCCGCACCAACCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCGCAAAACCAAGGATGACGACCAGCGTCTGG TTCTTCCTTGTGAAAAGTAGCCTGTGGCGGCGAACACCCACCGTATCGCT CCGTTTCGGCATGTAGCGGTATGATGTCTATGGTCTACCGACTATGGCAC GCGTTTCCATGAGCGCACCCCCACCGCGCCTAACCTTGTTTCACGACAAA CGTGTAATGAACACTTGCCAGCTGATGGAGGAGTTAGAGATAAAGCGACT GGCTCGTGAAGCTGAGATGGCGGTGCTGGCGGAAGAGGTGCGCCACGATG ATTCTATGCGCACGCATGTCCTATTTCCAGCGCGTTTCTGTCGTGGTGTT CAACAAAACAAGTTTGTTGTTGTCCGCTTGTCATGCACATCACCCTAGTA CCTCGCGTCGAATTGTATTGTCGTAGGTTTTCGCTTCTTCGTTCGTCGCG TTCTTTCCTGATGGTCTCTTTCTCTCTCCCCCCTAGGCCTTAATCTAACT TGGGAGTAGCCACTATCACTATGACCTACTTCATTCCACGCCGGTTCCCA GGGAACACATCGTTCTTCGCAGAACATTGATAGGCTTGTTCTCCAACACG AAATCCTTCCGCGTAGTCAACGAACATTCATCACGTGATACCGTTTCTTC TTCGTTGTTACAGGAGGAACGGCGTACGAAGGCGGCCCTGTACCTTGGGA GAGCCGCGGCAGCCGTCGAGGAGAAAAACTTCCAACAGATGCTCAGCGGG GCGGAGAGAGAGGCGGAGAGAAGGCAGCGCGTCGCGAGGTGTCTTGCTGG GCCGCTAATCGTGTGGTCGTCGATGTTGATGTTGCTGTTGTGTGGTGGTT GTGGTTGTGGGTGGTTGTGGTTATAACTTATTATTGGTGTTGTCGTTTTA CCATTCAGTCGTCGCGTATGCATCAAACAAAACAAAACACTACCAAAGTT GAAGCAAACAATGAAAGCGTGTCGCAGAAAGACTCAACCGCGACGCCGGT GGTGGGTGTCAGCGTCGTCTTCTGAACAGTGAGGCCATAAGCAAGAACGA AAGACTCCCAACGAACGATTCATCGTGATGTTGATATCATCGCCTGCTGG TCCATGGTTTGTGATAATCCAACAGAGAAGCGGCCGAGAAGTACCAGAAG GTCACGCGGGAAGACCGAAGACAGGTTGAGGAAAACACCAGAAAAAGAGA GGTACGCACAGGCAGCGCCACCATTTGAGGCCTATGTTTCCCCCGAATCT CGGGTATTATGTACGTGCGTACGTGCATGAGCGCGTCACGCGCAGCAACA TACGCTGAAAAAGTCATTTGTTTCGGCGGTCCAGGGAAAGTCTGACGGTG GGCGCACGCTGCCTTAAGACGGAATTCCATACCCGTATTTACGTTTTTTG TTGGCCTAGGTTACAGTAGTGCGGTGTTCGGTAGAGGGGGAGATGCGTCA AAGTCGGAACACGCGGTGTCAAAACGAAACAGCGACGAAAATATAACAAT AACGCCAACACCAGCAGCGCAACGAAAACAACAGCATAATAATCGCCAGC ACGAGTACCAACAACAGCAAGGCAAAGACGACGACGACATCGACGGCATA GCATCGTCATCAACAACAACAACAACAACAACAACAACAACCATCGCTTC CTGCAACCTCCGCCCACCCCCTAACCGCCCACCACACCACAGGCCCGCAA GCAACGCCTGTACAAGAAGAAGCAGGCCGAGTTTGACGCGGCTAGGAGAC GACTCATGGAGGAGCAGCGGAATGAGATGCGACAGCGGCAAGAGAACTTC AAGGCCGCAAGACAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10194:863..6930+

>mRNA_Ecto-sp8_S_contig10194.317.1 ID=mRNA_Ecto-sp8_S_contig10194.317.1|Name=mRNA_Ecto-sp8_S_contig10194.317.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10194:863..6930+ (Ectocarpus species8 EcLAC_412)
ATGAAGGTTGAGAAGGACCTGATGCAAGAACAGAGGGAGGCGGAGGAGGA
GCTGGCGGTGTTCATGAACCAGAGGCTTGTCAAGGAGGTAACCGAGGTGC
GTAGCACGGCACCGAAGGACGCCGTGCAGCGAGTTCTCGACGAAAAAAAG
TGCGGCAAGGAGAAGCTGTGCAAGGAGCTGGAGGAACTCAGAGCCGCTAG
AAAGAGGGAGGCGAAGGAGGAGGAGTTGAAGAAAAAGGAGGCGGTGCTCA
AGCTCAAAGAACAGGATATACACGAGCACCACGTCAAGGTGTTCGACCCG
ACGGAGAGCGCCGGGCTGGGGTTGCTTAACGAGATGTCTCTGGTGGAAAC
CAAGGTCCGTCTGGAGGCCAACGAGCGGAAGAGAGCGGAGGCGGAGTCGG
CGAGGAGAAGAGAGATTCTCCTGCAGAGGGCCAAGCGGGAAGCCGACCTG
AAAGAACGGCTAGAGAGCATCCAGGCCAGGAGGGCGGCCGCGAAGCAGGC
TAATCGTGAAGCCGCCAGGGAGCGGAAGGAGAGAGAAGCTGCCCAGGCGG
AGGCCGAGCGCATGCAAAGAGAGCGCAACAGCATTGCACTGATGGAGGAG
TTAGAGATAAAGCGACTGGCTCGTGAAGCTGAGATGGCGGTGCTGGCGGA
AGAGGAGGAACGGCGTACGAAGGCGGCCCTGTACCTTGGGAGAGCCGCGG
CAGCCGTCGAGGAGAAAAACTTCCAACAGATGCTCAGCGGGGCGGAGAGA
GAGGCGGAGAGAAGGCAGCGCGTCGCGAGGTAA
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