mRNA_Ecto-sp8_S_contig10190.313.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10190.313.1
Unique NamemRNA_Ecto-sp8_S_contig10190.313.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: D7FU89_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU89_ECTSI)

HSP 1 Score: 596 bits (1537), Expect = 1.940e-203
Identity = 311/333 (93.39%), Postives = 316/333 (94.89%), Query Frame = 1
Query:    1 DSVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNGQSCKPRCLVIDGAAFSLIEDAPLTSLHGPLEGEPSLMSLVSDSPAMSMSMSQTRRADTTTTETPSRLKATTYNERWRKDRQAAASVLPPRSTKELNFDLTASGSEPLSSGGRASPAATATEEDAMEG 999
            +SVRKRMSVVVRGPDGKVKVLAKGAD TMVPLLR DTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPE+DFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLV+EFERYCADM ACKKNGQSCKPRCLVIDGAAFSLIEDAPLTSLHGPLEGEPSLMSLVSDSPAMS            TTETPSRLKATTYNERWRKDRQAAASVLPPRS+KELNFDLTA+GSEPLSSGGRAS AA ATEEDAMEG
Sbjct:  628 NSVRKRMSVVVRGPDGKVKVLAKGADTTMVPLLRGDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEDDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVTEFERYCADMAACKKNGQSCKPRCLVIDGAAFSLIEDAPLTSLHGPLEGEPSLMSLVSDSPAMSXXXXXXXXXXXXTTETPSRLKATTYNERWRKDRQAAASVLPPRSSKELNFDLTATGSEPLSSGGRAS-AAAATEEDAMEG 959          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: H3GFP8_PHYRM (Phospholipid-transporting ATPase n=22 Tax=Phytophthora TaxID=4783 RepID=H3GFP8_PHYRM)

HSP 1 Score: 183 bits (464), Expect = 8.100e-48
Identity = 99/224 (44.20%), Postives = 145/224 (64.73%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSE-FERYCADMTACKKNGQSCKPRCLVIDGAAFSLI 672
            S RKRMSVVVR PD +V +L KGAD+ + P L + +   ++DTT+ HLE +A EGLRTL++  K+   E +  W   YD A+ DL ++A Q+ G PNRI++L  Q E+ L LIG TAIED+LQ  V  T+  + R G+ +WV+TGDKEETA+NIG ACQLL  ++ M+R +IN +T P+ + + + L+S   E         K   +  +P+ +VIDG + +++
Sbjct:  643 STRKRMSVVVRTPDKRVMLLTKGADSVIFPRLAQSSDSSIVDTTLMHLERYATEGLRTLVIAQKELSPEVYAEWSCEYDAALGDLEQMAMQRRGEPNRIEELEEQLEQGLQLIGATAIEDRLQDQVTSTLGDLARAGIKIWVLTGDKEETAVNIGFACQLL--DNDMERIMINAETLPSASDLYDMLLSRCVEARKRTERQAKGAKEESRPQAIVIDGRSLTMV 864          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: K3WE58_GLOUD (Phospholipid-transporting ATPase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WE58_GLOUD)

HSP 1 Score: 181 bits (460), Expect = 2.740e-47
Identity = 101/226 (44.69%), Postives = 145/226 (64.16%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVPLL-REDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNGQSC--KPRCLVIDGAAFSLI 672
            S RKRMSVVVR P+ K+ +L KGAD+ + P L +     ++++ T +HLE +A EGLRTL++  K+ PE  F AW   Y  A++DL EV +Q+AG PNRI+DL    E  L L+G TAIED+LQ  V  TI  + R G+ +W++TGDKEETAINIG ACQLL   + M+R IINT+T PT   + + L+      C ++   K  G +   + + ++IDG + +++
Sbjct:  640 STRKRMSVVVRNPEKKILLLTKGADSVIFPRLDQRQCDPQIVEITNQHLERYATEGLRTLVIAQKEIPENAFAAWSREYKNALSDLDEVQKQKAGEPNRIEDLEEALEMGLELLGATAIEDRLQDNVTSTIADLSRAGIKIWILTGDKEETAINIGFACQLL--NNDMERLIINTETFPTADKLYDMLLFR----CKEVRKLKLEGIASVSRSKAIIIDGKSLTMV 859          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: A0A8K1FH93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH93_PYTOL)

HSP 1 Score: 179 bits (455), Expect = 1.260e-46
Identity = 99/226 (43.81%), Postives = 147/226 (65.04%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDT-PKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNG--QSCKPRCLVIDGAAFSLI 672
            S RKRMSVVVR PD ++ +L KGAD+ + P L  D   + ++D T +HLE +A EGLRTL++  K+ P++ F  W   Y  A++DL +V  Q+ G PN+I++L    E  L L+G TAIED+LQ  V  TI  + R G+ +W++TGDKEETAINIG ACQLL   + M+R +IN  T PT + + + L   F R C ++ A +K+G  +S + + ++IDG + +++
Sbjct:  589 STRKRMSVVVRTPDKRILLLTKGADSVIFPRLHPDNCDQAIVDVTTQHLERYASEGLRTLVIAQKEIPDDAFMEWSREYKAALSDLEQVQRQKLGEPNQIEELEESLEMGLELLGATAIEDRLQDQVTSTIADLARAGIKIWILTGDKEETAINIGFACQLL--NNDMERLVINPDTYPTSSKLYDLL---FYR-CKELRAIRKDGASESARQQSIIIDGRSLAMV 808          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: A0A3F2RJT8_9STRA (Phospholipid-transporting ATPase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJT8_9STRA)

HSP 1 Score: 177 bits (450), Expect = 5.810e-46
Identity = 95/224 (42.41%), Postives = 147/224 (65.62%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSE-FERYCADMTACKKNGQSCKPRCLVIDGAAFSLI 672
            S RKRMSVVVR PD ++ +L KGAD+ + P L + +   ++DTT+ HLE +A EGLRTL++  K+  EE +  W E Y++A+ DL ++A Q+ G PN+I++L  Q E  L L+G TAIED+LQ  V  T+  + R G+ +WV+TGDKEETA+NIG ACQLL   + M+R +IN++T P+ + + + L++   E          +  +  +P+ +VIDG + +++
Sbjct:  561 STRKRMSVVVRTPDKRILLLTKGADSVIFPRLTQSSNSSIVDTTLAHLERYATEGLRTLVIAQKELTEEAYAEWSEEYNSALGDLEQMALQRRGEPNQIEELEEQLEEGLELMGATAIEDRLQDQVTSTLGDLSRAGIKIWVLTGDKEETAVNIGFACQLL--NNDMERIMINSETVPSASDLYDMLLARCIETRKRIEQQAHELPKEHQPQAIVIDGRSLTMV 782          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: A0A0P1AE94_PLAHL (Phospholipid-transporting ATPase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE94_PLAHL)

HSP 1 Score: 177 bits (449), Expect = 7.990e-46
Identity = 98/225 (43.56%), Postives = 144/225 (64.00%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEF--ERYCADMTACKKNGQSCKPRCLVIDGAAFSLI 672
            S RKRMSV+VR PD +V +L KGAD+ + P L   +   M+DTT+ HLE +A EGLRTL++  K+   + F  W   YD A++DL ++A Q+ G  NRI++L  Q E+ L LIG TAIED+LQ  V  T+  + R G+ +WV+TGDKEETA+NIG ACQLL   + M+R +INT T P+ + + + L++     R  A+   CK    +   + ++IDG + +++
Sbjct:  643 STRKRMSVIVRTPDKRVMLLTKGADSVIFPRLESSSDPTMVDTTLAHLERYATEGLRTLVIAQKELSPDVFAEWSNDYDAALSDLEQMALQKRGETNRIEELEEQLEQGLKLIGATAIEDRLQDKVTSTLGDLSRAGIKIWVLTGDKEETAVNIGFACQLL--NNDMERIMINTDTTPSASDLYDMLLARCLEARKRAERQNCKDLDDT-PQQAIIIDGRSLTMV 864          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: A0A4D9CUL2_9STRA (PhoLip_ATPase_C domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUL2_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.010e-45
Identity = 103/223 (46.19%), Postives = 138/223 (61.88%), Query Frame = 1
Query:    4 SVRKRMSVVVRG-PDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNGQSCKPRCLVIDGAAFSL 669
            S RKRMSV+V    DGK+ VLAKGAD  M P L+      +LD+T+EH++ FA EGLRTLMV      +E F  W   ++ A  DL ++  +++G+ N ID  M + E +  L+G TAIEDKLQ GV ETI  + R G+ VW++TGDKEETA+NIGVAC LL    +M R  IN++ C     V+  L  E +++  D    +K+  +CKPR LVIDG    L
Sbjct:  281 SARKRMSVIVESVEDGKILVLAKGADTAMGPRLKPGQGA-LLDSTLEHMKRFASEGLRTLMVCCATLTKEAFGRWYLDFERAAKDLAQIELRKSGKDNDIDACMDKIESNFELLGATAIEDKLQEGVPETIHDLTRAGIKVWMLTGDKEETAVNIGVACNLLEHSTKMRRISINSEKCQNEHHVQYLLKYELQKFKDDF---EKHQDNCKPRALVIDGPTLML 499          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: A0A2P4X6H4_9STRA (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6H4_9STRA)

HSP 1 Score: 172 bits (436), Expect = 6.240e-45
Identity = 94/223 (42.15%), Postives = 139/223 (62.33%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNGQSCKPRCLVIDGAAFSLI 672
            S RKRMSVVVR PD ++ +L KGAD+ + P L   +  EM++TT+  LE +A EGLRTL++  K+   + +  W   YD A+ DL ++A Q+ G PNRI++L    E+ L LIG TAIED+LQ  V  T+  + R G+ +WV+TGDKEETA+NIG ACQLL   + M+R +IN +T P+ + + + L++            K   +   P+ +VIDG   +++
Sbjct:  384 STRKRMSVVVRTPDKRIMLLTKGADSVIFPRLAPSSDPEMVNTTLAQLERYATEGLRTLVIAQKELSPDAYTEWSCEYDAALGDLEQMAMQKRGEPNRIEELEEILEQGLQLIGATAIEDRLQDQVTSTLGDLSRAGIKIWVLTGDKEETAVNIGFACQLL--NNDMERIMINAETVPSASDLYDMLLARCIEGRKRAEQQKGAKEEVPPQAIVIDGRCLTMV 604          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: A0A662XYF9_9STRA (Phospholipid-transporting ATPase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYF9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 7.850e-44
Identity = 99/233 (42.49%), Postives = 143/233 (61.37%), Query Frame = 1
Query:    4 SVRKRMSVVVRGPDGKVKVLAKGADATMVP-LLREDTPKEM-------LDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFE--RYCADMTACKKNGQSCKPRCLVIDGAAFSLI 672
            S RKRMSVVVR PDG+V +L KGAD+ + P L R     E+       + TT  HLE +A EGLRTL++  K    + + AW   YD A+ DL ++A Q+ G PNRI++L  Q E+DL L+G TAIED+LQ  V  T+  + R G+ +WV+TGDKEETA+NIG ACQLL   + M+R +IN  T P+ + + + ++      R   +  +     +  KP+ +VIDG + +++
Sbjct:  644 STRKRMSVVVRAPDGRVLLLTKGADSVIFPRLARPSASSEVKSASAAIVATTTAHLERYATEGLRTLVIAQKQLAPDAYAAWSAEYDRALGDLEQLALQRRGEPNRIEELEEQLEQDLDLMGATAIEDRLQDQVTTTLGDLSRAGIKIWVLTGDKEETAVNIGFACQLL--NNDMERLMINEDTVPSASELYDLMLRRCTEARQRQEQPSNALEAEEPKPQAIVIDGRSLTMV 874          
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Match: T0Q3D8_SAPDV (Phospholipid-transporting ATPase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q3D8_SAPDV)

HSP 1 Score: 169 bits (428), Expect = 4.670e-43
Identity = 100/235 (42.55%), Postives = 137/235 (58.30%), Query Frame = 1
Query:    1 DSVRKRMSVVVRGPDGKVKVLAKGADATMVPLLREDTP-KEMLDTTMEHLEGFALEGLRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQAERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNGQSCKPRCLVIDGAAFSLIEDAPLTSLHG 702
            +S RKRMS VVR P G++ +  KGAD  +   L++D     +L TT +H+  FA EGLRTL + +++  E D+ AW   Y  A+NDL E+ +++   PN ID  M + E +L L+G TAIEDKLQ GV +TI  +   G+ +WV+TGDKEETAINIG AC LL   + M R IIN + CPT T  ++ L  + E         +  G+      LVIDG +        L +LHG
Sbjct:  556 NSARKRMSTVVRDPSGQLLLFTKGADVVIFERLKKDASGAALLATTSQHINVFAEEGLRTLTIAMRELDEGDYAAWRRRYHVALNDLAEIEKRKREAPNAIDACMEELETNLELLGATAIEDKLQPGVPDTIATLADAGIKIWVLTGDKEETAINIGFACNLL--HNGMTRIIINAERCPTATETESELRRQLEH--------RVKGEDAA---LVIDGESL-------LVALHG 770          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10190.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU89_ECTSI1.940e-20393.39Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
H3GFP8_PHYRM8.100e-4844.20Phospholipid-transporting ATPase n=22 Tax=Phytopht... [more]
K3WE58_GLOUD2.740e-4744.69Phospholipid-transporting ATPase n=1 Tax=Globispor... [more]
A0A8K1FH93_PYTOL1.260e-4643.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RJT8_9STRA5.810e-4642.41Phospholipid-transporting ATPase n=3 Tax=Phytophth... [more]
A0A0P1AE94_PLAHL7.990e-4643.56Phospholipid-transporting ATPase n=1 Tax=Plasmopar... [more]
A0A4D9CUL2_9STRA1.010e-4546.19PhoLip_ATPase_C domain-containing protein (Fragmen... [more]
A0A2P4X6H4_9STRA6.240e-4542.15Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A662XYF9_9STRA7.850e-4442.49Phospholipid-transporting ATPase n=2 Tax=Nothophyt... [more]
T0Q3D8_SAPDV4.670e-4342.55Phospholipid-transporting ATPase n=2 Tax=Saprolegn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10190contigEcto-sp8_S_contig10190:1385..6507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score594.7
Seed ortholog evalue2.6e-167
Seed eggNOG ortholog2880.D7FU89
Model size1023
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
Cds size1005
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10190.313.1prot_Ecto-sp8_S_contig10190.313.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10190 1385..6489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.0936425-CDS-Ecto-sp8_S_contig10190:1384..15921681143117.0936425-CDS-Ecto-sp8_S_contig10190:1384..1592Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 1385..1592 -
1681143117.1182346-CDS-Ecto-sp8_S_contig10190:2293..24001681143117.1182346-CDS-Ecto-sp8_S_contig10190:2293..2400Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 2294..2400 -
1681143117.1293633-CDS-Ecto-sp8_S_contig10190:3315..34951681143117.1293633-CDS-Ecto-sp8_S_contig10190:3315..3495Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 3316..3495 -
1681143117.139032-CDS-Ecto-sp8_S_contig10190:4148..43491681143117.139032-CDS-Ecto-sp8_S_contig10190:4148..4349Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 4149..4349 -
1681143117.149043-CDS-Ecto-sp8_S_contig10190:5194..52901681143117.149043-CDS-Ecto-sp8_S_contig10190:5194..5290Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 5195..5290 -
1681143117.1584127-CDS-Ecto-sp8_S_contig10190:5753..58671681143117.1584127-CDS-Ecto-sp8_S_contig10190:5753..5867Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 5754..5867 -
1681143117.1757212-CDS-Ecto-sp8_S_contig10190:6390..64891681143117.1757212-CDS-Ecto-sp8_S_contig10190:6390..6489Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10190 6391..6489 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.189073-UTR-Ecto-sp8_S_contig10190:6489..65071681143117.189073-UTR-Ecto-sp8_S_contig10190:6489..6507Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10190 6490..6507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10190.313.1

>prot_Ecto-sp8_S_contig10190.313.1 ID=prot_Ecto-sp8_S_contig10190.313.1|Name=mRNA_Ecto-sp8_S_contig10190.313.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=335bp
MSVVVRGPDGKVKVLAKGADATMVPLLREDTPKEMLDTTMEHLEGFALEG
LRTLMVGVKDFPEEDFDAWDEAYDTAINDLTEVAEQQAGRPNRIDDLMAQ
AERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIG
VACQLLWAEDRMDRCIINTKTCPTPTAVKNRLVSEFERYCADMTACKKNG
QSCKPRCLVIDGAAFSLIEDAPLTSLHGPLEGEPSLMSLVSDSPAMSMSM
SQTRRADTTTTETPSRLKATTYNERWRKDRQAAASVLPPRSTKELNFDLT
ASGSEPLSSGGRASPAATATEEDAMEGEGVFWEG*
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mRNA from alignment at Ecto-sp8_S_contig10190:1385..6507-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10190.313.1 ID=mRNA_Ecto-sp8_S_contig10190.313.1|Name=mRNA_Ecto-sp8_S_contig10190.313.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5123bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10190:1385..6507- (Ectocarpus species8 EcLAC_412)
GACAGCGTGCGGAAGAGGATGTCCGTGGTCGTCCGAGGGCCAGACGGCAA GGTCAAGGTTCTCGCTAAGGGGGCCGACGCCACCATGGTGCCGTTGCTCA GGGAGGACACTCCGAAGGTAACGAGCTAGCTTACGCTTATCATCCATGAG GAGCACGGTACTACGTCGTTGCCTGTCGTGCAAGCTTTCGATTTAGAACA CAAGTACGCCAGGCGGTAGAAATGTTTCGTTTTCCATTGCGAATTGCTTT CATGTACCGGGCCACTTTTTTTTTAGACGGAGGTGCAATCTCGAAAGAAG AAAAGTGCCGGGTGTGCTGTAGGAGTGAACACTAGGCAGCAGGAGGTCCG ACACGCACTGTAGGTACACAGCTCCTTTCCTGTGCTAGTGCTCGCAGTCT ATACTCTATTCAAGTGATACGAAAGCAGTCTCGGTATCTCTCGTGTGTTT CGTTTTTTCAAACATTTTTGCACCTTTTTTTTTCTTTTGTCTCTTGTCTT CACTTCATGTCAGCGCTCACAGCACTTGTGCCGTTTACCCCAACACGTGG TCACACAGAAGGGTTCCTCTCCCTGAGGTCCCCTACCCACCCCTCCTGCG GTCCTGATACAACAAAAACGAAAACGTTAAACCTTGTTAGGAGATGCTCG ACACAACGATGGAGCACCTGGAAGGCTTTGCGCTGGAGGGGCTACGCACG CTCATGGTGGGGGTCAAGGACTTCCCGGAAGAGGACTTCGACGCTTGGGA CGAGGTGTGATTAGCTGCCTTTCTCTTGGTTGCCATAACTTTTTTTTGTT TTTTGTTTTTCGATGTGTCATGCCTGCTTTTTTTGTTTTGATGTTGGTTT TTTCTATGTGTCATGCCTGCTTCTTTTTTTTCGGTGTTTGTTTTTTCGAG TTGTCCTGTCTGCTCTATTGTACCTTTTTTTGGATGGCTGTTGTTTCGAT GTGTCATGCTTCCTTTTTCCGGTGTTCGTTTTTTCGATGTGTCAATGCCT GCTTATACTTTTTTGTCGGTGTTTTTCTTCTCGACGTGTCATCCCTGCTA GTACTTTTTTTCGGTGTTTTTGTTTCCGATGTGTCATACCTGCTTCTTTT TTTGTTCGTTGTCCAATTGTTAGATCAGTTCGGACTGATGAAGGTACTGG ATAGAGATATCGGAACGGTTTTCAATGTGAAGACAACATTATGCACGTTT TCTTTGTTTTATGGAAGGCGTATGACACGGCGATCAACGACCTGACGGAG GTGGCGGAGCAGCAAGCCGGCAGGCCGAACAGAATCGACGATCTCATGGC CCAGGCAGAGAGGGTGGGTGAACGTCGACCAGTGTGCATGACTCTTTTTT GTGTTCTTCGCGTTCTTAAGTTACAGCGGGTCGCGGGCAGGCAGAGTCTG TTTCGAGCAACGAAGAGGAGACGACTGAAATGCAACACTCGTTGCGCAGT GGGGGGCCCGGTATAGCCTTCCCCGGTGTTTTCGGCGGGCACGCACTAAA TTACCGTGTGCCATTCTGTGCTTTGAAAAGAGCCCCTGTCCGGGTAGTGC CGGTGAATTTTCTGGGCAAGTACGTACCGACACTAGACAGGGACCTCTAC TGTATTTGTGTTCGCAACAGGCTCTGCGTGCGCGTGTCCCGTGGCCCCGG CTGCTGTGGCTGAGGGACCGCGGTCGTTAGCCACGCAGAAAAGTTGGTTA GTTCGGTGTGTAGTCCACGTAGAGTAAGAAGGCGCTTCGTTCGCGAGAGG GCTCGGCCTTCTTGGTTGCTTCTACAAGGCGAAGAGTGTTGAGAAGTTCC TCCGCTTATCTTCCTTGCCGGACAAGGCCAGAAGGGTTATCATCGGTCGC GTCGCCTGCTACAACTTGTGTACTGAGCAACATCGTATATTACCATGAGG TTCGTATTGAAAGAAGCGTCCTCTCGGCAAAAAGACTTGCACACGCATGA AGTGACGTTAGCTCAGCTTATCGTTGAAATAGGCGTGTTTCTAGAAAACA CGCACACATCCAATCACTGAAAGACTACTCGTTCGAGATAAGCTACAGTC GAAAGGGGTGGACTATCCGTTTGTCGTATGTTTGGGAAGGTGTGTCTCCT CCAACTTATCATCTTTGCGGTGTTCCACTGAGGGATTTGTTTTGGGGTTG CTCTGCAGGACTTGACGTTGATCGGAGGCACGGCGATCGAAGACAAGCTC CAGACGGGTGTGGGAGAGACGATCGAGAAGATGGTAAGGGGGGGCATGGT GGTGTGGGTGATCACGGGGGATAAGGAGGAGACGGCCATCAACATCGGGG TGGCGTGCCAACTGCTGTGGGCGGAGGATAGGATGGACCGATGCATCATC AATACCAAGGTGTGTTGTTGTTGTGTTGTTTTTGTTGTTGTTGTTGTTGG TGGTGGTGGTGGTGGTTGATGGTGGTTGTTGTTGTTGTTGTCTTCACATT ACACTCGTGTCAGCTGCTAATCCTGGTGGTGGTGTTTTTATTGGTGTTTT CGATGTCGATGTTGCTGTTGGTGTTCACGAAGACGTTGTCAACCTTGTTC TAGGTGCTGGTGTTGGCAGTTGGCAGCCTGCAGACAAAGTATACCCTTGG TACCACTACTCTGTAGCCCTAAACCTGAGTTAACCCTCACCTTGTTCGTT GATCGACTTTGATGGTGCGTCTTTCGCAGACGTGTCCCACTCCGATACCC CTGCTACCACCGTAGGCGGTAGGTAGCCTGAGTTGTTGATGAACTTTGTT GATGAAATTTGTGTGCATCTTCGCCGTAGCCCTTGGCCTGAGGACCCTCA CCCTGTTTATTGATGAACTTTGTTGTGCATCTTCTCAGCCTGAGAACCTG AGAACCCTAATCCCTGTTTGTTGATCAACATTGCTGTGCGTCTTTCACTA CCCCCTGTTTTTGTTGATCGACCTTGTTGTGCATCTTCTCACCGTGGGTG GCCCTTAGCCTGAGTAACCCTAGTCCCTGTTTGTTGATTAACCTCCACTT CGTTATGCGCAGACGTGTCCCACTCCGACGGCGGTCAAGAACCGCCTCGT GTCGGAGTTCGAGCGGTACTGCGCCGACATGACCGCCTGCAAGAAGAACG GGCAGTCCTGCAAGCCGCGCTGCCTCGTCATCGACGGCGCCGCGTTCTCC CTCATCGAAGACGCCCCGCTCACCTCTCTGCACGGTCCTCTGGTGAGAGA GCGTACATGTACTGCTGTAGCAAGCAGATACCACACCCCCTGGGCCGGTT GTCGACGCTCGATCGCTTCACCAAGACGTAGGTAGCGCCGCTGACGTAAG ATACCACCCCCCCTAAAATCGATTACGGCCGATTACTCCACGACGAAGAG GAGGATGTAAAAAATCGAATGGTACATGTTCGGAAAGCTCTCGATGAGAC GGTGCCAACGTCGCCAGTTTTGGCGCCGCCACTATCTGCTGTCCCTGCAC CCATTTGGTCCATGTAGGTACTCCTTGAACCCTCTTCCTTCTTTCGACAT TTCGTACTCATCTAGACCTTCCTTATCCTTGGTTTGCTTCGGTTATATTC TGTTATCCTCTCTCGGCAAAGCAACAGCTACCGTATATCTTCTTCTTGAA CCCCCTCTACCAAACAACCACGCCGCAGCTCACTCCTCATGTCTTGGATG AGCCCGTACAACAGGTAGGCTTCGCTGAGCCCACACTCCAGGTCCTGTAC GCGGCGTCTTACGTCACCTATGCATACGGTAGAAACCGTTCCGCCGGAGT TAGTGAGCACTCGAGCTGCTCATTCCTCCGACGACCTCAGTAGCATGCAT GCACAGCACATGAGAGAACGCTCTGATCGGTGCTCCCAACAACTATAGGT TACAGCATGCTTATCTCTGCTGCGGGGCGGTGGTTGATTTCGTCAAGCGT GTCATATCAGGCAGACTTTCGGTCGAAATAATGATCCCTTGTCTTGCGCT TGCTTGACTCCCCGTGACACTAGCCCGAACACCCCCGCTACCCACCCCTG TTTTTTGCGAAAACTCTCTAATTTCCTTGTGCGGTTATCTATGGCATCGG CGACAACGAACGGCGACGACGACGATATCCAATCAACACCGACAACACCG ATAACAGGAAGGGGAACCGAGCCTTATGAGTCTTGTGTCCGACTCTCCGG CGATGAGCATGAGCATGTCTCAAACCCGGAGGGCGGATACGACTACGACC GAAACCCCGAGCAGGTTAGTTGGTCTTTGGATTTGGGTTAGGGTTAGCTG ATGCAGGTTAGTTAGTCTTTAGTGTTGCCAATGGTTCGCTCCCAAACAGG GGATACAAGATAGCGGGATATGCCGGCCGACTTTTTCGCGTGGCCTCGCG TGAACTATTGAGTACGCCACACTGTTTAACCGCATACATGCGAGACACAG CCCTGAGGACTTCCTGGTGTCAGTTTCCGTCTCTTCCCGGTTATCCCGTT GACAAGGTTGGGGTTTTGACGACACTTTCAAAGAGGCAGGCGTTGATTAT GCTCTGCGTCATCCAGTTTGAGTGCTGGCAGGTGTTTGGTTAGCGATCGT CCGTCCGCGGGTACGAAGCTGTTGCTCCGCAAATTAGTTTGTTCCCTTTC AGTGAACACTCGTGTAGGCCCTCCTTCTCGCGCGAGAATTAAGAGTAGAA CGACGTCTACGCAGCTTCGCAACGCCGGTTGTAAATGGAAGAGAGGTGGC AAAGATGCCTTCTCTTGTTTTGCAGGGCGATTTTCCGTGGCGGAATTCTC AAACACCAATTTCACCAGTTTAACAGATGTATTTAAAGTGGACCTGACTA CTTGTGCGCACACTCCCTTTTCTGCCCCCCTCCCCCCCCGAGGTCAATGG TCTAACGACTACGGCATGCACGACTATGAGTACCCCCCCCCCCCCCCCCC ACGTGTGCACACTAGGCTCAAGGCTACCACGTACAACGAGCGTTGGAGAA AAGACCGCCAGGCAGCGGCCTCGGTGCTTCCTCCCCGCTCTACCAAAGAG CTCAACTTCGACCTGACTGCGTCAGGCTCCGAACCGTTGTCTTCGGGAGG ACGGGCGTCACCCGCAGCAACAGCAACAGAAGAAGACGCCATGGAAGGAG AAGGTGTGTTTTGGGAGGGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10190:1385..6507-

>mRNA_Ecto-sp8_S_contig10190.313.1 ID=mRNA_Ecto-sp8_S_contig10190.313.1|Name=mRNA_Ecto-sp8_S_contig10190.313.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10190:1385..6507- (Ectocarpus species8 EcLAC_412)
ATGTCCGTGGTCGTCCGAGGGCCAGACGGCAAGGTCAAGGTTCTCGCTAA
GGGGGCCGACGCCACCATGGTGCCGTTGCTCAGGGAGGACACTCCGAAGG
AGATGCTCGACACAACGATGGAGCACCTGGAAGGCTTTGCGCTGGAGGGG
CTACGCACGCTCATGGTGGGGGTCAAGGACTTCCCGGAAGAGGACTTCGA
CGCTTGGGACGAGGCGTATGACACGGCGATCAACGACCTGACGGAGGTGG
CGGAGCAGCAAGCCGGCAGGCCGAACAGAATCGACGATCTCATGGCCCAG
GCAGAGAGGGACTTGACGTTGATCGGAGGCACGGCGATCGAAGACAAGCT
CCAGACGGGTGTGGGAGAGACGATCGAGAAGATGGTAAGGGGGGGCATGG
TGGTGTGGGTGATCACGGGGGATAAGGAGGAGACGGCCATCAACATCGGG
GTGGCGTGCCAACTGCTGTGGGCGGAGGATAGGATGGACCGATGCATCAT
CAATACCAAGACGTGTCCCACTCCGACGGCGGTCAAGAACCGCCTCGTGT
CGGAGTTCGAGCGGTACTGCGCCGACATGACCGCCTGCAAGAAGAACGGG
CAGTCCTGCAAGCCGCGCTGCCTCGTCATCGACGGCGCCGCGTTCTCCCT
CATCGAAGACGCCCCGCTCACCTCTCTGCACGGTCCTCTGGAAGGGGAAC
CGAGCCTTATGAGTCTTGTGTCCGACTCTCCGGCGATGAGCATGAGCATG
TCTCAAACCCGGAGGGCGGATACGACTACGACCGAAACCCCGAGCAGGCT
CAAGGCTACCACGTACAACGAGCGTTGGAGAAAAGACCGCCAGGCAGCGG
CCTCGGTGCTTCCTCCCCGCTCTACCAAAGAGCTCAACTTCGACCTGACT
GCGTCAGGCTCCGAACCGTTGTCTTCGGGAGGACGGGCGTCACCCGCAGC
AACAGCAACAGAAGAAGACGCCATGGAAGGAGAAGGTGTGTTTTGGGAGG
GTTAG
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