mRNA_Ecto-sp8_S_contig101886.309.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101886.309.1
Unique NamemRNA_Ecto-sp8_S_contig101886.309.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: UPI001594B95A (Cold shock domain-containing protein n=2 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001594B95A)

HSP 1 Score: 170 bits (430), Expect = 2.330e-51
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSSL 357
            VTCEYV APKGLQATKILDIDLSAC   +S     + +      +  + F+  EVKWFNRAKGYGFL+S DL GDIFLHMETLRDAGIAD+VPGQQLLA IKDG+RGHMAAQV LPSS+
Sbjct:   88 VTCEYVAAPKGLQATKILDIDLSACAETSSGAAPSSAQPVLRAVEDLSEFIAAEVKWFNRAKGYGFLVSNDLAGDIFLHMETLRDAGIADVVPGQQLLALIKDGERGHMAAQVSLPSSI 206          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A2M7LGC4_9SPHN (Cold-shock protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LGC4_9SPHN)

HSP 1 Score: 167 bits (423), Expect = 3.740e-50
Identity = 81/116 (69.83%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLP 348
            VTCEY VAPKGLQATKILDIDLS C   N        R+   I D D+ F+  EVKWFNRAKGYGFL+S   GGDIFLHMETLRDAGI +IVPGQQL+ARI+DG+RGHMA QV LP
Sbjct:   99 VTCEYAVAPKGLQATKILDIDLSECGVRNESSAVSGSRQAMHIVDDDSAFIGAEVKWFNRAKGYGFLVSDAFGGDIFLHMETLRDAGIDEIVPGQQLMARIRDGNRGHMAVQVCLP 214          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A127MC29_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MC29_9SPHN)

HSP 1 Score: 166 bits (419), Expect = 1.090e-49
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
            VTCEY VAPKGLQAT+ILDIDLS C   N      + R+   I D ++ F+D+EVKWFNRAKGYGFL+S D  GDIFLHMETLRDAGI ++VPGQQLLARI+DG+RGHMA QV  P S
Sbjct:   88 VTCEYAVAPKGLQATRILDIDLSKCGPRNEASTASSARQPIHIVDDNSTFIDSEVKWFNRAKGYGFLVSDDFDGDIFLHMETLRDAGIIEVVPGQQLLARIRDGNRGHMAVQVCQPPS 205          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A2G2CT69_9SPHN (Cold-shock protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2CT69_9SPHN)

HSP 1 Score: 164 bits (416), Expect = 6.880e-49
Identity = 81/116 (69.83%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLP 348
            VTCEY  APKGLQATKILDIDLS C         P  R+   I D D+ FV  EVKWFNRAKGYGFL+S D  GDIFLHMETLRDAGI +IVPGQ L+ARIKDG+RGHMA QV LP
Sbjct:  115 VTCEYAAAPKGLQATKILDIDLSQCGPKGDSSVAPGTRQAMHIVDDDSPFVHAEVKWFNRAKGYGFLVSDDFEGDIFLHMETLRDAGIDEIVPGQTLMARIKDGNRGHMAVQVYLP 230          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A220W7C3_9SPHN (Cold shock-like protein CspC n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W7C3_9SPHN)

HSP 1 Score: 162 bits (411), Expect = 1.780e-48
Identity = 80/118 (67.80%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
            VTCEY VAPKGLQAT+ILDIDLS C   N        R+   I D ++ FV+ EVKWFNRAKGYGFL+S D  GDIFLHMETLRDAGIA+I PGQ LL RI+DG+RGHMA QV LP S
Sbjct:   88 VTCEYAVAPKGLQATRILDIDLSECGPKNDAPATTGARQAMHIVDENSAFVNAEVKWFNRAKGYGFLVSDDFDGDIFLHMETLRDAGIAEIAPGQLLLTRIRDGNRGHMAVQVCLPPS 205          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A2D3RBR3_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonadales TaxID=204457 RepID=A0A2D3RBR3_9SPHN)

HSP 1 Score: 162 bits (411), Expect = 3.110e-48
Identity = 80/118 (67.80%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
            VTCEY VAPKGLQAT+ILDIDLS C            R+   I D D+ FV+ EVKWFNRAKGYGFL+S D  GDIFLHMETLRDAGIA+I PGQ LL RI+DG+RGHMA QV LP S
Sbjct:  107 VTCEYAVAPKGLQATRILDIDLSDCGPKKDTSPPTGSRQAMHIVDEDSAFVNAEVKWFNRAKGYGFLVSDDFDGDIFLHMETLRDAGIAEIAPGQLLLTRIRDGNRGHMAVQVCLPPS 224          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A653JRW5_9SPHN (Cold shock-like protein CspC n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JRW5_9SPHN)

HSP 1 Score: 160 bits (404), Expect = 2.050e-47
Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
            VTCEY VAPKGLQAT+ILDIDLS+C           +R+   I D ++ FV+ EVKWFNRAKGYGFL+S    GDIFLHMETLRDAGIA+I PGQ LL RI+DG+RGHMA QV LP S
Sbjct:   88 VTCEYAVAPKGLQATRILDIDLSSCGPKADKSEPKGNRQAMHIVDENSAFVNAEVKWFNRAKGYGFLVSDAFDGDIFLHMETLRDAGIAEIAPGQPLLTRIRDGNRGHMAVQVCLPPS 205          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A1B6ZF38_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6ZF38_9SPHN)

HSP 1 Score: 159 bits (402), Expect = 2.470e-47
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLP 348
            ++CEYV APKGLQATKIL+IDLS C      Q  PA  +   + D   RF D EVKWFNRAKGYGFL++ D+GGDIFLHMETLRDAGI +I+PGQ LL RIKD +RGHMA Q  LP
Sbjct:   71 ISCEYVEAPKGLQATKILEIDLSDCGPPVGSQSPPAGCKAMHVVDDAGRFFDAEVKWFNRAKGYGFLVNNDVGGDIFLHMETLRDAGIGEILPGQHLLVRIKDSERGHMAVQATLP 186          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A3B0R0B3_9ZZZZ (Cold shock protein of CSP family => dimer n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0R0B3_9ZZZZ)

HSP 1 Score: 144 bits (362), Expect = 5.420e-41
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDAR-FVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRL 345
            V CEY+ APKGLQATKIL IDLS+C          + R+   + D DA  FVD EVKWFNRAKGYGFLI+AD+ GD+F+HMETLR+AG+ ++VPGQ L ARI  GDRG++A QV L
Sbjct:   90 VECEYLDAPKGLQATKILTIDLSSCAPDTVDHGPDSARKAMHVVDEDASGFVDAEVKWFNRAKGYGFLIAADIEGDVFVHMETLRNAGVGEVVPGQHLQARITQGDRGNLAVQVAL 205          
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A1N6CV64_9SPHN (Cold shock protein (Beta-ribbon, CspA family) n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6CV64_9SPHN)

HSP 1 Score: 142 bits (358), Expect = 1.890e-40
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDAR-FVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
            VTCEYV APKGLQAT+ILD+ +         Q     R    + D D+  FV +EVKWFNRAKGYGFLI+ +L GD+FLHMETLRDAG+ ++ PGQ L+ R  DG+RGHMA QV LP S
Sbjct:   85 VTCEYVEAPKGLQATRILDVQIPEHAVTQDLQAPETKRRAIHVVDDDSTPFVRSEVKWFNRAKGYGFLIAENLNGDVFLHMETLRDAGLTEVFPGQALMVRTSDGERGHMAVQVSLPPS 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001594B95A2.330e-5170.59Cold shock domain-containing protein n=2 Tax=Paras... [more]
A0A2M7LGC4_9SPHN3.740e-5069.83Cold-shock protein n=1 Tax=Sphingomonadales bacter... [more]
A0A127MC29_9SPHN1.090e-4967.80Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A2G2CT69_9SPHN6.880e-4969.83Cold-shock protein n=1 Tax=Sphingopyxis sp. TaxID=... [more]
A0A220W7C3_9SPHN1.780e-4867.80Cold shock-like protein CspC n=2 Tax=Sphingorhabdu... [more]
A0A2D3RBR3_9SPHN3.110e-4867.80Uncharacterized protein n=2 Tax=Sphingomonadales T... [more]
A0A653JRW5_9SPHN2.050e-4766.10Cold shock-like protein CspC n=1 Tax=Sphingorhabdu... [more]
A0A1B6ZF38_9SPHN2.470e-4765.52Uncharacterized protein n=1 Tax=Sphingomonadales b... [more]
A0A3B0R0B3_9ZZZZ5.420e-4161.21Cold shock protein of CSP family => dimer n=1 Tax=... [more]
A0A1N6CV64_9SPHN1.890e-4057.98Cold shock protein (Beta-ribbon, CspA family) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101886contigEcto-sp8_S_contig101886:2..361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score103.6
Seed ortholog evalue6.5e-20
Seed eggNOG ortholog1282876.BAOK01000001_gene1974
Preferred namecspB
Model size360
KEGG koko:K03704
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Cold shock protein domain
EggNOG OGs1RAUE@1224,2U0S7@28211,4BR2P@82117,COG1278@1,COG1278@2
Cds size360
COG Functional cat.K
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143116.8239067-CDS-Ecto-sp8_S_contig101886:1..3611681143116.8239067-CDS-Ecto-sp8_S_contig101886:1..361Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101886 2..361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101886.309.1prot_Ecto-sp8_S_contig101886.309.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101886 2..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101886.309.1

>prot_Ecto-sp8_S_contig101886.309.1 ID=prot_Ecto-sp8_S_contig101886.309.1|Name=mRNA_Ecto-sp8_S_contig101886.309.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp
VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARF
VDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLAR
IKDGDRGHMAAQVRLPSSL*
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mRNA from alignment at Ecto-sp8_S_contig101886:2..361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101886.309.1 ID=mRNA_Ecto-sp8_S_contig101886.309.1|Name=mRNA_Ecto-sp8_S_contig101886.309.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101886:2..361+ (Ectocarpus species8 EcLAC_412)
GTCACATGTGAATATGTGGTCGCGCCAAAAGGACTGCAGGCCACAAAGAT TCTCGACATCGACCTTTCTGCTTGTGAAACGGCGAACTCGCATCAGCGGA AACCGGCAGACAGAGAGACTCCCTGCATCGCAGATCCGGATGCCAGGTTC GTCGACACCGAGGTGAAATGGTTCAATCGCGCCAAGGGCTACGGCTTCCT GATCAGTGCCGACCTTGGCGGCGACATCTTCCTGCATATGGAAACGCTCC GCGACGCAGGAATTGCAGACATTGTTCCTGGCCAGCAATTGCTTGCCAGG ATAAAAGACGGCGATCGCGGCCATATGGCTGCGCAAGTCCGCCTGCCCTC TTCGCTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101886:2..361+

>mRNA_Ecto-sp8_S_contig101886.309.1 ID=mRNA_Ecto-sp8_S_contig101886.309.1|Name=mRNA_Ecto-sp8_S_contig101886.309.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101886:2..361+ (Ectocarpus species8 EcLAC_412)
GTCACATGTGAATATGTGGTCGCGCCAAAAGGACTGCAGGCCACAAAGAT
TCTCGACATCGACCTTTCTGCTTGTGAAACGGCGAACTCGCATCAGCGGA
AACCGGCAGACAGAGAGACTCCCTGCATCGCAGATCCGGATGCCAGGTTC
GTCGACACCGAGGTGAAATGGTTCAATCGCGCCAAGGGCTACGGCTTCCT
GATCAGTGCCGACCTTGGCGGCGACATCTTCCTGCATATGGAAACGCTCC
GCGACGCAGGAATTGCAGACATTGTTCCTGGCCAGCAATTGCTTGCCAGG
ATAAAAGACGGCGATCGCGGCCATATGGCTGCGCAAGTCCGCCTGCCCTC
TTCGCTCTGA
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