mRNA_Ecto-sp8_S_contig101886.309.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: UPI001594B95A (Cold shock domain-containing protein n=2 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001594B95A) HSP 1 Score: 170 bits (430), Expect = 2.330e-51 Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSSL 357
VTCEYV APKGLQATKILDIDLSAC +S + + + + F+ EVKWFNRAKGYGFL+S DL GDIFLHMETLRDAGIAD+VPGQQLLA IKDG+RGHMAAQV LPSS+
Sbjct: 88 VTCEYVAAPKGLQATKILDIDLSACAETSSGAAPSSAQPVLRAVEDLSEFIAAEVKWFNRAKGYGFLVSNDLAGDIFLHMETLRDAGIADVVPGQQLLALIKDGERGHMAAQVSLPSSI 206
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A2M7LGC4_9SPHN (Cold-shock protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LGC4_9SPHN) HSP 1 Score: 167 bits (423), Expect = 3.740e-50 Identity = 81/116 (69.83%), Postives = 89/116 (76.72%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLP 348
VTCEY VAPKGLQATKILDIDLS C N R+ I D D+ F+ EVKWFNRAKGYGFL+S GGDIFLHMETLRDAGI +IVPGQQL+ARI+DG+RGHMA QV LP
Sbjct: 99 VTCEYAVAPKGLQATKILDIDLSECGVRNESSAVSGSRQAMHIVDDDSAFIGAEVKWFNRAKGYGFLVSDAFGGDIFLHMETLRDAGIDEIVPGQQLMARIRDGNRGHMAVQVCLP 214
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A127MC29_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MC29_9SPHN) HSP 1 Score: 166 bits (419), Expect = 1.090e-49 Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
VTCEY VAPKGLQAT+ILDIDLS C N + R+ I D ++ F+D+EVKWFNRAKGYGFL+S D GDIFLHMETLRDAGI ++VPGQQLLARI+DG+RGHMA QV P S
Sbjct: 88 VTCEYAVAPKGLQATRILDIDLSKCGPRNEASTASSARQPIHIVDDNSTFIDSEVKWFNRAKGYGFLVSDDFDGDIFLHMETLRDAGIIEVVPGQQLLARIRDGNRGHMAVQVCQPPS 205
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A2G2CT69_9SPHN (Cold-shock protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2CT69_9SPHN) HSP 1 Score: 164 bits (416), Expect = 6.880e-49 Identity = 81/116 (69.83%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLP 348
VTCEY APKGLQATKILDIDLS C P R+ I D D+ FV EVKWFNRAKGYGFL+S D GDIFLHMETLRDAGI +IVPGQ L+ARIKDG+RGHMA QV LP
Sbjct: 115 VTCEYAAAPKGLQATKILDIDLSQCGPKGDSSVAPGTRQAMHIVDDDSPFVHAEVKWFNRAKGYGFLVSDDFEGDIFLHMETLRDAGIDEIVPGQTLMARIKDGNRGHMAVQVYLP 230
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A220W7C3_9SPHN (Cold shock-like protein CspC n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W7C3_9SPHN) HSP 1 Score: 162 bits (411), Expect = 1.780e-48 Identity = 80/118 (67.80%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
VTCEY VAPKGLQAT+ILDIDLS C N R+ I D ++ FV+ EVKWFNRAKGYGFL+S D GDIFLHMETLRDAGIA+I PGQ LL RI+DG+RGHMA QV LP S
Sbjct: 88 VTCEYAVAPKGLQATRILDIDLSECGPKNDAPATTGARQAMHIVDENSAFVNAEVKWFNRAKGYGFLVSDDFDGDIFLHMETLRDAGIAEIAPGQLLLTRIRDGNRGHMAVQVCLPPS 205
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A2D3RBR3_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonadales TaxID=204457 RepID=A0A2D3RBR3_9SPHN) HSP 1 Score: 162 bits (411), Expect = 3.110e-48 Identity = 80/118 (67.80%), Postives = 88/118 (74.58%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
VTCEY VAPKGLQAT+ILDIDLS C R+ I D D+ FV+ EVKWFNRAKGYGFL+S D GDIFLHMETLRDAGIA+I PGQ LL RI+DG+RGHMA QV LP S
Sbjct: 107 VTCEYAVAPKGLQATRILDIDLSDCGPKKDTSPPTGSRQAMHIVDEDSAFVNAEVKWFNRAKGYGFLVSDDFDGDIFLHMETLRDAGIAEIAPGQLLLTRIRDGNRGHMAVQVCLPPS 224
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A653JRW5_9SPHN (Cold shock-like protein CspC n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JRW5_9SPHN) HSP 1 Score: 160 bits (404), Expect = 2.050e-47 Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
VTCEY VAPKGLQAT+ILDIDLS+C +R+ I D ++ FV+ EVKWFNRAKGYGFL+S GDIFLHMETLRDAGIA+I PGQ LL RI+DG+RGHMA QV LP S
Sbjct: 88 VTCEYAVAPKGLQATRILDIDLSSCGPKADKSEPKGNRQAMHIVDENSAFVNAEVKWFNRAKGYGFLVSDAFDGDIFLHMETLRDAGIAEIAPGQPLLTRIRDGNRGHMAVQVCLPPS 205
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A1B6ZF38_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6ZF38_9SPHN) HSP 1 Score: 159 bits (402), Expect = 2.470e-47 Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLP 348
++CEYV APKGLQATKIL+IDLS C Q PA + + D RF D EVKWFNRAKGYGFL++ D+GGDIFLHMETLRDAGI +I+PGQ LL RIKD +RGHMA Q LP
Sbjct: 71 ISCEYVEAPKGLQATKILEIDLSDCGPPVGSQSPPAGCKAMHVVDDAGRFFDAEVKWFNRAKGYGFLVNNDVGGDIFLHMETLRDAGIGEILPGQHLLVRIKDSERGHMAVQATLP 186
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A3B0R0B3_9ZZZZ (Cold shock protein of CSP family => dimer n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0R0B3_9ZZZZ) HSP 1 Score: 144 bits (362), Expect = 5.420e-41 Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDAR-FVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRL 345
V CEY+ APKGLQATKIL IDLS+C + R+ + D DA FVD EVKWFNRAKGYGFLI+AD+ GD+F+HMETLR+AG+ ++VPGQ L ARI GDRG++A QV L
Sbjct: 90 VECEYLDAPKGLQATKILTIDLSSCAPDTVDHGPDSARKAMHVVDEDASGFVDAEVKWFNRAKGYGFLIAADIEGDVFVHMETLRNAGVGEVVPGQHLQARITQGDRGNLAVQVAL 205
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Match: A0A1N6CV64_9SPHN (Cold shock protein (Beta-ribbon, CspA family) n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6CV64_9SPHN) HSP 1 Score: 142 bits (358), Expect = 1.890e-40 Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 1
Query: 1 VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDAR-FVDTEVKWFNRAKGYGFLISADLGGDIFLHMETLRDAGIADIVPGQQLLARIKDGDRGHMAAQVRLPSS 354
VTCEYV APKGLQAT+ILD+ + Q R + D D+ FV +EVKWFNRAKGYGFLI+ +L GD+FLHMETLRDAG+ ++ PGQ L+ R DG+RGHMA QV LP S
Sbjct: 85 VTCEYVEAPKGLQATRILDVQIPEHAVTQDLQAPETKRRAIHVVDDDSTPFVRSEVKWFNRAKGYGFLIAENLNGDVFLHMETLRDAGLTEVFPGQALMVRTSDGERGHMAVQVSLPPS 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101886.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101886.309.1 >prot_Ecto-sp8_S_contig101886.309.1 ID=prot_Ecto-sp8_S_contig101886.309.1|Name=mRNA_Ecto-sp8_S_contig101886.309.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp VTCEYVVAPKGLQATKILDIDLSACETANSHQRKPADRETPCIADPDARFback to top mRNA from alignment at Ecto-sp8_S_contig101886:2..361+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101886.309.1 ID=mRNA_Ecto-sp8_S_contig101886.309.1|Name=mRNA_Ecto-sp8_S_contig101886.309.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101886:2..361+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101886:2..361+ >mRNA_Ecto-sp8_S_contig101886.309.1 ID=mRNA_Ecto-sp8_S_contig101886.309.1|Name=mRNA_Ecto-sp8_S_contig101886.309.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101886:2..361+ (Ectocarpus species8 EcLAC_412)back to top |