mRNA_Ecto-sp8_S_contig101826.300.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101826.300.1
Unique NamemRNA_Ecto-sp8_S_contig101826.300.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101826.300.1 vs. uniprot
Match: D8LSD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.360e-32
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 QLKINEVKELTACPYCRSTGQLPCATCYGVGSINVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVS 246
            QLKINEVKELTACPYCRSTGQLPCATC+GVGSI+VLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVS
Sbjct:  130 QLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVS 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101826.300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSD2_ECTSI1.360e-3297.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101826contigEcto-sp8_S_contig101826:72..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143116.242166-CDS-Ecto-sp8_S_contig101826:71..3171681143116.242166-CDS-Ecto-sp8_S_contig101826:71..317Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101826 72..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101826.300.1prot_Ecto-sp8_S_contig101826.300.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101826 72..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101826.300.1

>prot_Ecto-sp8_S_contig101826.300.1 ID=prot_Ecto-sp8_S_contig101826.300.1|Name=mRNA_Ecto-sp8_S_contig101826.300.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=82bp
QLKINEVKELTACPYCRSTGQLPCATCYGVGSINVLDTVASSNEVTTTTL
TCPSCRGKGFITCVNCKGDGRGVPLFLNKKVS
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mRNA from alignment at Ecto-sp8_S_contig101826:72..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101826.300.1 ID=mRNA_Ecto-sp8_S_contig101826.300.1|Name=mRNA_Ecto-sp8_S_contig101826.300.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101826:72..317- (Ectocarpus species8 EcLAC_412)
CAGCTCAAGATCAACGAAGTGAAGGAACTCACGGCTTGCCCCTACTGCCG
GTCCACGGGGCAGCTCCCGTGCGCGACTTGCTACGGCGTGGGTTCGATAA
ACGTGCTGGACACTGTGGCGTCCTCGAACGAAGTGACCACGACGACGCTC
ACGTGCCCGTCCTGCCGCGGGAAAGGGTTCATAACGTGCGTCAACTGCAA
GGGCGACGGCCGCGGCGTGCCGCTCTTCCTCAACAAGAAGGTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101826:72..317-

>mRNA_Ecto-sp8_S_contig101826.300.1 ID=mRNA_Ecto-sp8_S_contig101826.300.1|Name=mRNA_Ecto-sp8_S_contig101826.300.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101826:72..317- (Ectocarpus species8 EcLAC_412)
CAGCTCAAGATCAACGAAGTGAAGGAACTCACGGCTTGCCCCTACTGCCG
GTCCACGGGGCAGCTCCCGTGCGCGACTTGCTACGGCGTGGGTTCGATAA
ACGTGCTGGACACTGTGGCGTCCTCGAACGAAGTGACCACGACGACGCTC
ACGTGCCCGTCCTGCCGCGGGAAAGGGTTCATAACGTGCGTCAACTGCAA
GGGCGACGGCCGCGGCGTGCCGCTCTTCCTCAACAAGAAGGTGTCG
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