mRNA_Ecto-sp8_S_contig101773.293.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101773.293.1
Unique NamemRNA_Ecto-sp8_S_contig101773.293.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A6H5KG61_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG61_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH 111
            QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH
Sbjct:  402 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH 436          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A2H0A182_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium CG23_combo_of_CG06-09_8_20_14_all_51_8 TaxID=1973983 RepID=A0A2H0A182_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 3.430e-8
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1
Query:    1 VNQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH 111
            V QLP GY G I+LAL PPLWR +MD RVLK R K +
Sbjct:   10 VPQLPTGYAGMIVLALIPPLWRKIMDPRVLKFRRKQN 46          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A377GK50_9GAMM (Alkane 1-monooxygenase 2 n=3 Tax=Legionellaceae TaxID=444 RepID=A0A377GK50_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 3.720e-8
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 108
            QLP GY G I+LALFPPLWR VMDKRVL  RSKN
Sbjct:  316 QLPSGYLGMIILALFPPLWRRVMDKRVLAHRSKN 349          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A0W0S8S6_9GAMM (Alkane monooxygenase n=1 Tax=Legionella cherrii TaxID=28084 RepID=A0A0W0S8S6_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 6.990e-8
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 108
            QLP GY G ++LALFPPLWR VMDKRVL  RSKN
Sbjct:  316 QLPSGYLGMLILALFPPLWRGVMDKRVLISRSKN 349          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A378L8H5_9GAMM (Alkane monooxygenase n=1 Tax=Legionella steigerwaltii TaxID=460 RepID=A0A378L8H5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 6.990e-8
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 108
            QLP GY G ++LALFPPLWR VMDKRVL  RSKN
Sbjct:  316 QLPSGYLGMLILALFPPLWRKVMDKRVLIYRSKN 349          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A7G4RHJ9_9GAMM (Alkane 1-monooxygenase n=1 Tax=Legionella sp. PC997 TaxID=2755562 RepID=A0A7G4RHJ9_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-7
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 108
            QLP GY G I+LALFPPLWR VMDKRVL  R+ N
Sbjct:  316 QLPSGYLGMIILALFPPLWRKVMDKRVLAHRASN 349          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A3A4SZ57_9DELT (Alkane 1-monooxygenase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4SZ57_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-6
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 VNQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSK 105
            V QLP GY G I+LAL PPLWR +MD RVLK R +
Sbjct:  313 VPQLPTGYAGMIVLALIPPLWRKIMDPRVLKFRQR 347          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A0W0YZX0_9GAMM (Alkane-1-monooxygenase n=1 Tax=Legionella shakespearei DSM 23087 TaxID=1122169 RepID=A0A0W0YZX0_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 2.220e-6
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSK 105
            QLP GY G ++LALFPPLW+AVMDKRV++ R +
Sbjct:  316 QLPSGYLGMMVLALFPPLWKAVMDKRVIEYRKR 348          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A4V3F676_9GAMM (Alkane 1-monooxygenase n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4V3F676_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 2.220e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKL 96
            +LP GYP C  LA FPPLWRAVMDKRVL++
Sbjct:  334 ELPSGYPLCFTLAYFPPLWRAVMDKRVLEV 363          
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Match: A0A378JNT5_9GAMM (Alkane-1-monooxygenase n=2 Tax=Legionella TaxID=445 RepID=A0A378JNT5_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 3.030e-6
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    7 QLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH 111
            QLP GY G I LAL PPLW  VMDKRVL  RSK++
Sbjct:  316 QLPTGYLGMIFLALIPPLWHKVMDKRVLDYRSKHN 350          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101773.293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG61_9PHAE1.700e-15100.00FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
A0A2H0A182_9DELT3.430e-864.86Uncharacterized protein n=1 Tax=Desulfobacterales ... [more]
A0A377GK50_9GAMM3.720e-879.41Alkane 1-monooxygenase 2 n=3 Tax=Legionellaceae Ta... [more]
A0A0W0S8S6_9GAMM6.990e-876.47Alkane monooxygenase n=1 Tax=Legionella cherrii Ta... [more]
A0A378L8H5_9GAMM6.990e-876.47Alkane monooxygenase n=1 Tax=Legionella steigerwal... [more]
A0A7G4RHJ9_9GAMM4.610e-773.53Alkane 1-monooxygenase n=1 Tax=Legionella sp. PC99... [more]
A0A3A4SZ57_9DELT1.620e-665.71Alkane 1-monooxygenase n=1 Tax=Desulfobacteraceae ... [more]
A0A0W0YZX0_9GAMM2.220e-666.67Alkane-1-monooxygenase n=1 Tax=Legionella shakespe... [more]
A0A4V3F676_9GAMM2.220e-673.33Alkane 1-monooxygenase n=1 Tax=Panacagrimonas pers... [more]
A0A378JNT5_9GAMM3.030e-668.57Alkane-1-monooxygenase n=2 Tax=Legionella TaxID=44... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101773contigEcto-sp8_S_contig101773:256..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score75.5
Seed ortholog evalue5.9e-12
Seed eggNOG ortholog2880.D7FNV7
Model size111
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Fatty acid desaturase
EggNOG OGs2CXPI@1,2RYW0@2759
Cds size111
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143115.666775-CDS-Ecto-sp8_S_contig101773:255..3661681143115.666775-CDS-Ecto-sp8_S_contig101773:255..366Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101773 256..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101773.293.1prot_Ecto-sp8_S_contig101773.293.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101773 256..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101773.293.1

>prot_Ecto-sp8_S_contig101773.293.1 ID=prot_Ecto-sp8_S_contig101773.293.1|Name=mRNA_Ecto-sp8_S_contig101773.293.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=37bp
VNQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH
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mRNA from alignment at Ecto-sp8_S_contig101773:256..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101773.293.1 ID=mRNA_Ecto-sp8_S_contig101773.293.1|Name=mRNA_Ecto-sp8_S_contig101773.293.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101773:256..366+ (Ectocarpus species8 EcLAC_412)
GTCAACCAGCTCCCGCTGGGCTACCCGGGCTGTATCCTCCTGGCGCTCTT CCCTCCCCTCTGGAGGGCCGTCATGGACAAGCGTGTGCTCAAGCTGCGGA GCAAGAACCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101773:256..366+

>mRNA_Ecto-sp8_S_contig101773.293.1 ID=mRNA_Ecto-sp8_S_contig101773.293.1|Name=mRNA_Ecto-sp8_S_contig101773.293.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101773:256..366+ (Ectocarpus species8 EcLAC_412)
GTCAACCAGCTCCCGCTGGGCTACCCGGGCTGTATCCTCCTGGCGCTCTT
CCCTCCCCTCTGGAGGGCCGTCATGGACAAGCGTGTGCTCAAGCTGCGGA
GCAAGAACCAC
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