mRNA_Ecto-sp8_S_contig101701.285.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101701.285.1
Unique NamemRNA_Ecto-sp8_S_contig101701.285.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101701.285.1 vs. uniprot
Match: D7FU54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU54_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 4.800e-5
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  235 TAPETEPPRVGGGGRRLLRAMSLCGNIASGCHDIAS 342
            T PETEP RVG G RRLLRAMSLCG+I + C  IAS
Sbjct:   81 TTPETEPSRVGCG-RRLLRAMSLCGSIRASCIRIAS 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101701.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU54_ECTSI4.800e-572.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101701contigEcto-sp8_S_contig101701:169..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size355
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003730.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143115.1820366-CDS-Ecto-sp8_S_contig101701:168..5221681143115.1820366-CDS-Ecto-sp8_S_contig101701:168..522Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101701 169..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101701.285.1prot_Ecto-sp8_S_contig101701.285.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101701 169..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101701.285.1

>prot_Ecto-sp8_S_contig101701.285.1 ID=prot_Ecto-sp8_S_contig101701.285.1|Name=mRNA_Ecto-sp8_S_contig101701.285.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
WRRRRRRRRLRRPKPQHMRRPCPQSAAPMTVANSAPASPASARRAPPAPN
ATATAAAAAAAAAAAAATAASRAVAAASTAPETEPPRVGGGGRRLLRAMS
LCGNIASGCHDIASNAQ*
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mRNA from alignment at Ecto-sp8_S_contig101701:169..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101701.285.1 ID=mRNA_Ecto-sp8_S_contig101701.285.1|Name=mRNA_Ecto-sp8_S_contig101701.285.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101701:169..522+ (Ectocarpus species8 EcLAC_412)
TGGCGGCGGCGGCGGAGGCGGAGGCGTCTACGGCGCCCGAAACCTCAACA
CATGCGTCGACCATGCCCCCAATCGGCCGCCCCCATGACCGTAGCAAACT
CAGCGCCTGCTTCGCCCGCGAGCGCCAGGCGTGCTCCGCCCGCGCCTAAC
GCTACCGCCACCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCAGCCGCCGC
CACCGCCGCATCCCGGGCGGTGGCGGCGGCATCTACGGCACCCGAGACTG
AGCCACCCCGGGTAGGCGGCGGCGGCCGCCGGCTCCTGCGCGCGATGTCC
CTCTGCGGCAACATCGCGTCCGGCTGCCACGATATCGCGTCCAACGCACA
ATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101701:169..522+

>mRNA_Ecto-sp8_S_contig101701.285.1 ID=mRNA_Ecto-sp8_S_contig101701.285.1|Name=mRNA_Ecto-sp8_S_contig101701.285.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101701:169..522+ (Ectocarpus species8 EcLAC_412)
TGGCGGCGGCGGCGGAGGCGGAGGCGTCTACGGCGCCCGAAACCTCAACA
CATGCGTCGACCATGCCCCCAATCGGCCGCCCCCATGACCGTAGCAAACT
CAGCGCCTGCTTCGCCCGCGAGCGCCAGGCGTGCTCCGCCCGCGCCTAAC
GCTACCGCCACCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCAGCCGCCGC
CACCGCCGCATCCCGGGCGGTGGCGGCGGCATCTACGGCACCCGAGACTG
AGCCACCCCGGGTAGGCGGCGGCGGCCGCCGGCTCCTGCGCGCGATGTCC
CTCTGCGGCAACATCGCGTCCGGCTGCCACGATATCGCGTCCAACGCACA
ATAA
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