mRNA_Ecto-sp8_S_contig101699.282.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101699.282.1
Unique NamemRNA_Ecto-sp8_S_contig101699.282.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A6H5KXM9_9PHAE (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXM9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.570e-32
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKTDEVVVYADRSYKKMEQV 186
            RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKTDEVVVYADRSYKKMEQV
Sbjct:  369 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKTDEVVVYADRSYKKMEQV 430          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A836CJC2_9STRA (Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.030e-20
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKTDEVVVYADRSYKKMEQV 186
            RAIRL  LS GEA+ALVPYADL NHNPFAN+Y+DARQ G +  K DEV VY+DR+YK+MEQ+
Sbjct:  291 RAIRLASLSDGEAIALVPYADLLNHNPFANAYVDARQTG-WLKKVDEVAVYSDRAYKRMEQI 351          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A7S3UXM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM7_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 7.620e-19
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKT-DEVVVYADRSYKKMEQV 186
            RAI L GL  G  VALVPYADLFNHNPFA+S+IDA+ +G +F++T +EVVVYADRSYKK EQV
Sbjct:  231 RAICLNGLEGGPQVALVPYADLFNHNPFASSFIDAQSKGGWFTETKEEVVVYADRSYKKFEQV 293          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A7S0C601_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C601_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-18
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQG--LFFSKTDEVVVYADRSYKKMEQV 186
            RAIRL  L  GEA+A+VPYADL NH+PF+ +Y+DARQ+G  LF   T+EV++YADRSY+KMEQV
Sbjct:  238 RAIRLRNLGNGEALAMVPYADLINHSPFSGAYVDARQKGSWLFKEGTEEVILYADRSYRKMEQV 301          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A7S2JZ65_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ65_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.670e-18
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQG--LFFSKTDEVVVYADRSYKKMEQV 186
            RAIRL  L  GEA+ALVPYADL NH+PF+ +Y+DAR+ G  LF   T+EV++YADRSY+KMEQ+
Sbjct:  290 RAIRLRNLEDGEALALVPYADLINHSPFSGAYVDAREVGDWLFKDGTEEVILYADRSYRKMEQI 353          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A7S0XCH7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCH7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.050e-18
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGL-FFSKTDEVVVYADRSYKKMEQV 186
            RA RL   STGE +ALVPYADL NH+P++N+YIDA++ GL F S+T+EV +Y+DR+YKK EQV
Sbjct:   55 RAARLSSKSTGEELALVPYADLMNHSPYSNTYIDAQRSGLPFVSRTEEVALYSDRNYKKFEQV 117          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A7R9ZQL9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQL9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.170e-18
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQG--LFFSKTDEVVVYADRSYKKMEQV 186
            RAIRL  L +GEA+A+VPYADL NH+PF+ +YIDAR+ G  LF S  DEV++YADR Y++MEQV
Sbjct:   61 RAIRLRSLKSGEALAMVPYADLINHSPFSQAYIDAREAGDWLFSSGFDEVILYADRGYRRMEQV 124          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A7S3DRA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRA3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.860e-17
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKT--DEVVVYADRSYKKMEQV 186
            RAIRL  L  GE +ALVPYADL NH+PF+ +YIDARQ+G +  KT  +EVV++ADR Y++MEQ+
Sbjct:  118 RAIRLRSLQQGETLALVPYADLINHSPFSQAYIDARQEGDWLFKTGEEEVVLFADRGYRRMEQI 181          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: A0A1Z5JTW8_FISSO (SET domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTW8_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 4.940e-17
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQG--LFFSKTDEVVVYADRSYKKMEQV 186
            RAIRL  LS GE +ALVPYADL NH+PF+ +YIDARQ G  LF +  +EV++YADR Y++MEQ+
Sbjct:  245 RAIRLRNLSQGETLALVPYADLINHSPFSQAYIDARQSGDWLFKNGDEEVILYADRGYRRMEQI 308          
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Match: B5Y418_PHATC (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y418_PHATC)

HSP 1 Score: 82.4 bits (202), Expect = 6.800e-17
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQG--LFFSKTDEVVVYADRSYKKMEQV 186
            RAIRL  L  GE +ALVPYADL NH+PF+ +YIDARQ G  LF S  +EV++YADR Y++MEQ+
Sbjct:  276 RAIRLRSLKQGETLALVPYADLINHSPFSQAYIDARQNGDWLFKSGDEEVILYADRGYRRMEQI 339          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101699.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXM9_9PHAE2.570e-32100.00SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJC2_9STRA1.030e-2070.97Putative ribulose-1,5-bisphosphate carboxylase/oxy... [more]
A0A7S3UXM7_HETAK7.620e-1971.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0C601_9STRA1.160e-1865.63Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2JZ65_9STRA7.670e-1864.06Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0XCH7_9STRA8.050e-1863.49Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7R9ZQL9_9STRA8.170e-1864.06Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3DRA3_9STRA2.860e-1760.94Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1Z5JTW8_FISSO4.940e-1762.50SET domain-containing protein n=2 Tax=Fistulifera ... [more]
B5Y418_PHATC6.800e-1762.50Ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101699contigEcto-sp8_S_contig101699:15..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score126.7
Seed ortholog evalue3.7e-27
Seed eggNOG ortholog2880.D7FLC0
Model size186
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
Cds size186
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.9163487-CDS-Ecto-sp8_S_contig101699:14..2001681143114.9163487-CDS-Ecto-sp8_S_contig101699:14..200Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101699 15..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101699.282.1prot_Ecto-sp8_S_contig101699.282.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101699 15..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101699.282.1

>prot_Ecto-sp8_S_contig101699.282.1 ID=prot_Ecto-sp8_S_contig101699.282.1|Name=mRNA_Ecto-sp8_S_contig101699.282.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp
RAIRLGGLSTGEAVALVPYADLFNHNPFANSYIDARQQGLFFSKTDEVVV
YADRSYKKMEQV
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mRNA from alignment at Ecto-sp8_S_contig101699:15..200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101699.282.1 ID=mRNA_Ecto-sp8_S_contig101699.282.1|Name=mRNA_Ecto-sp8_S_contig101699.282.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101699:15..200- (Ectocarpus species8 EcLAC_412)
AGAGCGATACGACTGGGAGGTCTCAGCACCGGGGAGGCGGTTGCCCTCGT GCCGTACGCGGACCTGTTCAACCACAACCCGTTCGCAAACAGCTACATCG ACGCGCGGCAGCAGGGTTTGTTCTTCTCCAAGACGGACGAGGTGGTGGTG TACGCTGACCGGTCCTACAAGAAGATGGAACAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101699:15..200-

>mRNA_Ecto-sp8_S_contig101699.282.1 ID=mRNA_Ecto-sp8_S_contig101699.282.1|Name=mRNA_Ecto-sp8_S_contig101699.282.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101699:15..200- (Ectocarpus species8 EcLAC_412)
AGAGCGATACGACTGGGAGGTCTCAGCACCGGGGAGGCGGTTGCCCTCGT
GCCGTACGCGGACCTGTTCAACCACAACCCGTTCGCAAACAGCTACATCG
ACGCGCGGCAGCAGGGTTTGTTCTTCTCCAAGACGGACGAGGTGGTGGTG
TACGCTGACCGGTCCTACAAGAAGATGGAACAGGTG
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