mRNA_Ecto-sp8_S_contig10169.280.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10169.280.1
Unique NamemRNA_Ecto-sp8_S_contig10169.280.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10169.280.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.390e-7
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    7 STALHAAVYGVHVEAVRALLQAGTNPNSMDVRGWTPLDVACTMFRAAPR 153
            S A+HAAVY   V+++RALL AG +PN+ D  G TPL  AC +F AA R
Sbjct:   83 SPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADR 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10169.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAW5_9PHAE3.390e-755.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10169contigEcto-sp8_S_contig10169:848..1003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.79489-CDS-Ecto-sp8_S_contig10169:847..10031681143114.79489-CDS-Ecto-sp8_S_contig10169:847..1003Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 848..1003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10169.280.1prot_Ecto-sp8_S_contig10169.280.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10169 848..1003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10169.280.1

>prot_Ecto-sp8_S_contig10169.280.1 ID=prot_Ecto-sp8_S_contig10169.280.1|Name=mRNA_Ecto-sp8_S_contig10169.280.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
MCSTALHAAVYGVHVEAVRALLQAGTNPNSMDVRGWTPLDVACTMFRAAP
R*
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mRNA from alignment at Ecto-sp8_S_contig10169:848..1003-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10169.280.1 ID=mRNA_Ecto-sp8_S_contig10169.280.1|Name=mRNA_Ecto-sp8_S_contig10169.280.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10169:848..1003- (Ectocarpus species8 EcLAC_412)
ATGTGCTCGACGGCCTTGCACGCCGCGGTTTACGGCGTCCACGTCGAGGC
CGTCCGCGCCCTGCTGCAAGCCGGCACCAACCCGAACTCCATGGACGTCA
GGGGCTGGACGCCGCTCGATGTGGCGTGCACCATGTTTCGAGCCGCGCCG
CGATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10169:848..1003-

>mRNA_Ecto-sp8_S_contig10169.280.1 ID=mRNA_Ecto-sp8_S_contig10169.280.1|Name=mRNA_Ecto-sp8_S_contig10169.280.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10169:848..1003- (Ectocarpus species8 EcLAC_412)
ATGTGCTCGACGGCCTTGCACGCCGCGGTTTACGGCGTCCACGTCGAGGC
CGTCCGCGCCCTGCTGCAAGCCGGCACCAACCCGAACTCCATGGACGTCA
GGGGCTGGACGCCGCTCGATGTGGCGTGCACCATGTTTCGAGCCGCGCCG
CGATAA
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