mRNA_Ecto-sp8_S_contig101680.278.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101680.278.1
Unique NamemRNA_Ecto-sp8_S_contig101680.278.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101680.278.1 vs. uniprot
Match: D8LJD6_ECTSI (Ribosomal protein L11 methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.120e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 MEPPSLADGLPISSEELGAFDVTVANILAGPIIRLQPVFAYLTRPG 138
            MEPPS+ADG PIS+EELGAFDVTVANILAGPIIRLQPVFAYLTRPG
Sbjct:  359 MEPPSVADGFPISTEELGAFDVTVANILAGPIIRLQPVFAYLTRPG 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101680.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJD6_ECTSI2.120e-2093.48Ribosomal protein L11 methyltransferase n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101680contigEcto-sp8_S_contig101680:374..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score92.0
Seed ortholog evalue7.7e-17
Seed eggNOG ortholog2880.D8LJD6
Model size141
KEGG koko:K03301
KEGG TC2.A.12
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2QQTZ@2759,COG2264@1
Cds size141
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.7361686-CDS-Ecto-sp8_S_contig101680:373..5141681143114.7361686-CDS-Ecto-sp8_S_contig101680:373..514Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101680 374..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101680.278.1prot_Ecto-sp8_S_contig101680.278.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101680 374..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101680.278.1

>prot_Ecto-sp8_S_contig101680.278.1 ID=prot_Ecto-sp8_S_contig101680.278.1|Name=mRNA_Ecto-sp8_S_contig101680.278.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=47bp
MEPPSLADGLPISSEELGAFDVTVANILAGPIIRLQPVFAYLTRPG*
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mRNA from alignment at Ecto-sp8_S_contig101680:374..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101680.278.1 ID=mRNA_Ecto-sp8_S_contig101680.278.1|Name=mRNA_Ecto-sp8_S_contig101680.278.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101680:374..514+ (Ectocarpus species8 EcLAC_412)
ATGGAGCCACCGTCGCTGGCGGACGGGCTCCCAATTTCTTCCGAAGAGCT
TGGAGCGTTTGACGTCACGGTCGCCAACATCCTTGCAGGCCCCATCATCA
GGCTCCAGCCCGTGTTTGCGTATTTGACGCGTCCAGGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101680:374..514+

>mRNA_Ecto-sp8_S_contig101680.278.1 ID=mRNA_Ecto-sp8_S_contig101680.278.1|Name=mRNA_Ecto-sp8_S_contig101680.278.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101680:374..514+ (Ectocarpus species8 EcLAC_412)
ATGGAGCCACCGTCGCTGGCGGACGGGCTCCCAATTTCTTCCGAAGAGCT
TGGAGCGTTTGACGTCACGGTCGCCAACATCCTTGCAGGCCCCATCATCA
GGCTCCAGCCCGTGTTTGCGTATTTGACGCGTCCAGGTTAG
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