mRNA_Ecto-sp8_S_contig10168.277.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: D7FXL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL1_ECTSI) HSP 1 Score: 265 bits (677), Expect = 5.580e-89 Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 1
Query: 100 MSSNGEQSAGVSAPTLPTKRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGFSEYHSPVLAK 516
MSSNGEQSAGV+APTLPTKRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYG SEY SPVLAK
Sbjct: 1 MSSNGEQSAGVAAPTLPTKRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGLSEYRSPVLAK 139
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: D7FQI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI6_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 2.010e-9 Identity = 30/102 (29.41%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 208 IGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGFSEYHSPVLA 513
+G+GV+LTA+VT + VV+ G F+G + + +G ++ G + C + G ++S +L + A V+G ++Y L+V G +L G ++S A
Sbjct: 100 VGKGVVLTANVTSCDKVVVEGNFQGNIKTGTFVLSEGGQMEGEVRCSDGCIGGNMKATIIASKTLLIGKAAVVTGDMVYDSLQVLDGGRLQGKLTHYSSTTA 201
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: A0A6H5JYZ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ3_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 5.340e-9 Identity = 29/102 (28.43%), Postives = 56/102 (54.90%), Query Frame = 1
Query: 208 IGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGFSEYHSPVLA 513
+G+GV+LTA+VT + VV+ G F+G + + +G ++ G + C + G ++S +L + A V+G ++Y L+V +G ++ G ++S A
Sbjct: 226 VGKGVVLTANVTSCDKVVVEGNFQGNIETGTFVLSEGGQMEGEVRCSEGCIGGNMKATIIASETLLIGKAAVVTGDMVYDSLQVLEGGRIQGKLTHYSSSTA 327
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: A0A1L3J6P3_9FLAO (Uncharacterized protein n=1 Tax=Gramella salexigens TaxID=1913577 RepID=A0A1L3J6P3_9FLAO) HSP 1 Score: 60.8 bits (146), Expect = 9.110e-9 Identity = 34/101 (33.66%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 208 IGQGVLLTADVTGAELVVIRGCFEGKV-TAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGFSEYHSPV 507
I G L+T +++G I G EG + T + I +G V+GT+EC+ A + GKF+G +L L + AN+ G +I +L V GA E + V
Sbjct: 20 IAAGTLITGEISGKGCFRIEGTLEGSLKTPGKVVISEGGMVKGTLECDNADIEGKFNGKLFVKDTLSLRAPANIEGEVIAGKLAVEPGAVFNATCEMNGGV 120
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: UPI001F4DE4F3 (polymer-forming cytoskeletal protein n=2 Tax=Gramella TaxID=292691 RepID=UPI001F4DE4F3) HSP 1 Score: 58.5 bits (140), Expect = 6.810e-8 Identity = 33/101 (32.67%), Postives = 49/101 (48.51%), Query Frame = 1
Query: 208 IGQGVLLTADVTGAELVVIRGCFEGKV-TAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGFSEYHSPV 507
I G L+T D+ G + G EG + T + I +G + GT+ECE A + GKF G + L L + AN+ G ++ +L V GA E + V
Sbjct: 20 IAAGTLITGDIQGKGCFRVEGTLEGTLKTPGKVVISEGGLINGTLECENADIEGKFQGKLLIKGILTLRNTANIEGEVVTGKLAVEPGAVFNATCEMNGGV 120
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: UPI001F2A341E (polymer-forming cytoskeletal protein n=1 Tax=Aequorivita sp. F64183 TaxID=2874476 RepID=UPI001F2A341E) HSP 1 Score: 56.6 bits (135), Expect = 5.680e-7 Identity = 36/111 (32.43%), Postives = 56/111 (50.45%), Query Frame = 1
Query: 148 PTKRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKV-TAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQL 477
P K+ + +E N+ I +G L D++ + I G EG V T + + + E++GT+ CE A + GKF+G + +L L S A V G I+ +L V GA L
Sbjct: 3 PEKKAKKNNVEPSTAQNR--ISEGTTLKGDISSSGFFRIDGSIEGNVNTPSKVVLGKTGEIKGTLSCENADLEGKFEGSLQVTGTLTLRSTALVEGEIVVGKLSVEPGAVL 111
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: A0A2D9QCI0_9FLAO (Cell shape determination protein CcmA n=1 Tax=Aequorivita sp. TaxID=1872390 RepID=A0A2D9QCI0_9FLAO) HSP 1 Score: 51.2 bits (121), Expect = 5.470e-5 Identity = 36/109 (33.03%), Postives = 53/109 (48.62%), Query Frame = 1
Query: 154 KRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKV-TAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQL 477
K+ + +E T N+ I +G L DV+ I G EG V T + + + + GT+ CE A + GKF+G S +L L S A V G ++ +L V GA L
Sbjct: 5 KKERKSNMEPGTTQNR--INEGTRLKGDVSSTGFFRIDGTIEGNVNTPSKVVLGKTGIIIGTLTCENADIEGKFEGNLQVSGTLSLRSTAVVEGDVVVGKLSVEPGATL 111
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Match: A0A6M2AS03_9FLAO (Polymer-forming cytoskeletal protein n=3 Tax=Aequorivita TaxID=153265 RepID=A0A6M2AS03_9FLAO) HSP 1 Score: 51.2 bits (121), Expect = 5.640e-5 Identity = 32/91 (35.16%), Postives = 45/91 (49.45%), Query Frame = 1
Query: 208 IGQGVLLTADVTGAELVVIRGCFEGKV-TAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQL 477
I +G L D++ I G EG V T + + + + GT+ CE A + GKF+G S +L L S A V G I+ +L V GA L
Sbjct: 21 INEGTKLKGDISSTGFFRIDGTIEGNVHTPSKVVLGKTGVILGTLSCENADLEGKFEGSLQVSGTLTLRSTALVEGEIVVGKLSVEPGAVL 111 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10168.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10168.277.1 >prot_Ecto-sp8_S_contig10168.277.1 ID=prot_Ecto-sp8_S_contig10168.277.1|Name=mRNA_Ecto-sp8_S_contig10168.277.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp MSSSENCTAALGGGSTKAREQGILASTDSTRSEMSSNGEQSAGVSAPTLPback to top mRNA from alignment at Ecto-sp8_S_contig10168:218..3959+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10168.277.1 ID=mRNA_Ecto-sp8_S_contig10168.277.1|Name=mRNA_Ecto-sp8_S_contig10168.277.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3742bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10168:218..3959+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10168:218..3959+ >mRNA_Ecto-sp8_S_contig10168.277.1 ID=mRNA_Ecto-sp8_S_contig10168.277.1|Name=mRNA_Ecto-sp8_S_contig10168.277.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10168:218..3959+ (Ectocarpus species8 EcLAC_412)back to top |