mRNA_Ecto-sp8_S_contig101679.276.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101679.276.1
Unique NamemRNA_Ecto-sp8_S_contig101679.276.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101679.276.1 vs. uniprot
Match: D7FTJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.930e-7
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   55 SSLPGIPSFICKCRVGTLRHARHTPRDVS 141
            SSL GIPS I KCRVGTLRHARHT RD S
Sbjct:  136 SSLSGIPSMIRKCRVGTLRHARHTSRDAS 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101679.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTJ9_ECTSI1.930e-782.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101679contigEcto-sp8_S_contig101679:3..146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-13_004670.1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.6156754-CDS-Ecto-sp8_S_contig101679:2..1461681143114.6156754-CDS-Ecto-sp8_S_contig101679:2..146Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101679 3..146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101679.276.1prot_Ecto-sp8_S_contig101679.276.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101679 3..146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101679.276.1

>prot_Ecto-sp8_S_contig101679.276.1 ID=prot_Ecto-sp8_S_contig101679.276.1|Name=mRNA_Ecto-sp8_S_contig101679.276.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
EEPSPENRGTPGEEPPSESSLPGIPSFICKCRVGTLRHARHTPRDVS*
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mRNA from alignment at Ecto-sp8_S_contig101679:3..146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101679.276.1 ID=mRNA_Ecto-sp8_S_contig101679.276.1|Name=mRNA_Ecto-sp8_S_contig101679.276.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101679:3..146+ (Ectocarpus species8 EcLAC_412)
GAGGAACCGTCGCCCGAGAACCGTGGAACGCCGGGGGAGGAACCGCCGAG
CGAGAGCAGCCTGCCTGGAATCCCGTCCTTTATCTGCAAGTGCAGGGTGG
GCACGTTGCGGCACGCCCGACACACGCCTAGAGACGTCAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101679:3..146+

>mRNA_Ecto-sp8_S_contig101679.276.1 ID=mRNA_Ecto-sp8_S_contig101679.276.1|Name=mRNA_Ecto-sp8_S_contig101679.276.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101679:3..146+ (Ectocarpus species8 EcLAC_412)
GAGGAACCGTCGCCCGAGAACCGTGGAACGCCGGGGGAGGAACCGCCGAG
CGAGAGCAGCCTGCCTGGAATCCCGTCCTTTATCTGCAAGTGCAGGGTGG
GCACGTTGCGGCACGCCCGACACACGCCTAGAGACGTCAGCTGA
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