mRNA_Ecto-sp8_S_contig10163.272.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10163.272.1
Unique NamemRNA_Ecto-sp8_S_contig10163.272.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: D7FP74_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP74_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.930e-39
Identity = 337/355 (94.93%), Postives = 338/355 (95.21%), Query Frame = 1 
Query:  184 AWVSPFLDSESCSXXXXXXXXXXXXXXXXXXKHGADMDGAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAANHRNPRIENDVVNLRFGREPSPLELAACHGHAHVVRTMLRHGAYVDSKDCPYQPALHRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAGSTAAEVIGHNCDGEELQAEDIEQLESLLICAGLDDINND 1248
            AWVSPFLDSESCSXXXXXXXXXXXXXXXXX KHGADMD AASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANHRNP IENDVVNLRFG EPSPLELAACHGHAHVVRTMLRHGA VDS DCPYQPALHRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         VIGHNCDGEELQAE+IEQLESLLICAGL DINND
Sbjct:  150 AWVSPFLDSESCSXXXXXXXXXXXXXXXXXAKHGADMDAAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNPIIENDVVNLRFGGEPSPLELAACHGHAHVVRTMLRHGADVDSTDCPYQPALHRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIGHNCDGEELQAENIEQLESLLICAGLGDINND 504
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: A0A0E0JZZ5_ORYPU (FBD domain-containing protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0JZZ5_ORYPU)

HSP 1 Score: 61.6 bits (148), Expect = 2.040e-6
Identity = 34/66 (51.52%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    4 DGNGDAPLHIAGARGDVGLVRLLLSSGADPNLPDRKQRTPLHVAARYGHAETAGALLSGGAWVSPF 201
            D  GD PL  A     +  VR LL  GA+P+ PD K  TPLHVAA  G  E A  LLS GA V PF
Sbjct:  926 DDTGDTPLAYAVRGSTINGVRYLLDHGANPDKPDNKGSTPLHVAAMKGECEIAKILLSSGAHVDPF 991
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: UPI0008FB6FDC (ankyrin repeat domain-containing protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI0008FB6FDC)

HSP 1 Score: 55.1 bits (131), Expect = 8.470e-6
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 RDGNGDAPLHIAGARGDVGLVRLLLSSGADPNLPDRKQRTPLHVAARYGHAETAGALLSGGA 186
            R+G GD+PLH+    GD   +R+L+++GAD NLP     TPLH A    H+     LL  GA
Sbjct:   28 RNGWGDSPLHVVSCWGDCEAIRVLVTAGADINLPGETGFTPLHCAVEQDHSGAVALLLELGA 89
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: A0A1M7BRI3_9RHOB (Uncharacterized protein n=2 Tax=Roseovarius marisflavi TaxID=1054996 RepID=A0A1M7BRI3_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 4.630e-5
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   25 LHIAGARGDVGLVRLLLSSGADPNLPDRKQRTPLHVAARYGHAETAGALLSGGA 186
            LH+A   GD+     LL+ GADP++ DR QRTP HVAA   H     AL +GGA
Sbjct:   34 LHLAAHEGDIAETVRLLAEGADPDVRDRAQRTPAHVAAFASHGGVIAALAAGGA 87
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: A0A1G8CXH5_9RHOO (Ankyrin repeat-containing protein n=1 Tax=Propionivibrio dicarboxylicus TaxID=83767 RepID=A0A1G8CXH5_9RHOO)

HSP 1 Score: 54.7 bits (130), Expect = 5.670e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   16 DAPLHIAGARGDVGLVRLLLSSGADPNLPDRKQRTPLHVAARYGHAETA 162
            D+PL  A  +GD+G +R L+  GAD N  D   RTPLH+AA YGH  T+
Sbjct:   55 DSPLAKAVVQGDIGEIRTLIDGGADINARDTLGRTPLHIAAFYGHTRTS 103
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: A0A8H7WCP9_9HELO (Uncharacterized protein n=1 Tax=Cadophora malorum TaxID=108018 RepID=A0A8H7WCP9_9HELO)

HSP 1 Score: 55.8 bits (133), Expect = 7.570e-5
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   13 GDAPLHIAGARGDVGLVRLLLSSGADPNLPDRK-QRTPLHVAARYGHAETAGALLSGGAWVSP 198
            G +PLH+A   G    V+LL   GAD +L  R  ++TPLH+AARYGHA    ALL  G   +P
Sbjct:  272 GYSPLHLAAVGGRTSTVKLLTRYGADLDLKSRSDEQTPLHLAARYGHAGAVTALLQAGCAQNP 334
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BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Match: A0A3S3SHH0_9ACAR (Ion channel nompc-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3SHH0_9ACAR)

HSP 1 Score: 56.6 bits (135), Expect = 7.800e-5
Identity = 25/54 (46.30%), Postives = 30/54 (55.56%), Query Frame = 1 
Query:   10 NGDAPLHIAGARGDVGLVRLLLSSGADPNLPDRKQRTPLHVAARYGHAETAGAL 171
            +G  PLHI    GD   VR   S+GADPN+ D + RTPLH+A   GH      L
Sbjct:  505 DGQTPLHIVAEEGDETFVRFFYSAGADPNVKDNEDRTPLHLATEKGHTRIVDIL 558
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10163.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FP74_ECTSI1.930e-3994.93Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
A0A0E0JZZ5_ORYPU2.040e-651.52FBD domain-containing protein n=1 Tax=Oryza puncta... [more]
UPI0008FB6FDC8.470e-643.55ankyrin repeat domain-containing protein n=1 Tax=P... [more]
A0A1M7BRI3_9RHOB4.630e-550.00Uncharacterized protein n=2 Tax=Roseovarius marisf... [more]
A0A1G8CXH5_9RHOO5.670e-551.02Ankyrin repeat-containing protein n=1 Tax=Propioni... [more]
A0A8H7WCP9_9HELO7.570e-547.62Uncharacterized protein n=1 Tax=Cadophora malorum ... [more]
A0A3S3SHH0_9ACAR7.800e-546.30Ion channel nompc-like protein n=1 Tax=Dinothrombi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10163contigEcto-sp8_S_contig10163:1636..3118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score157.9
Seed ortholog evalue1e-35
Seed eggNOG ortholog2880.D7FP74
Model size1251
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_000580.1
Cds size1251
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.2919896-CDS-Ecto-sp8_S_contig10163:1635..17751681143114.2919896-CDS-Ecto-sp8_S_contig10163:1635..1775Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10163 1636..1775 +
1681143114.3046386-CDS-Ecto-sp8_S_contig10163:2007..31181681143114.3046386-CDS-Ecto-sp8_S_contig10163:2007..3118Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10163 2008..3118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10163.272.1prot_Ecto-sp8_S_contig10163.272.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10163 1636..3118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10163.272.1

>prot_Ecto-sp8_S_contig10163.272.1 ID=prot_Ecto-sp8_S_contig10163.272.1|Name=mRNA_Ecto-sp8_S_contig10163.272.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=417bp
RDGNGDAPLHIAGARGDVGLVRLLLSSGADPNLPDRKQRTPLHVAARYGH
AETAGALLSGGAWVSPFLDSESCSPLELAVRHGHVDVVGVLAKHGADMDG
AASTGLTLLHLAASEDMVDLLQCLVAAGASLESRDTDGSTALHIAAEKGA
AAAVKVLLSLGARPCEFNGDGLSPLGLACKGGHLQAVLAILAANHRNPRI
ENDVVNLRFGREPSPLELAACHGHAHVVRTMLRHGAYVDSKDCPYQPALH
RAADGGHVDVLKVLIDHGANLDAVDADAETALHHAATFDQSGAVDVLVRA
GANIEAVGEELYTPLHLACRFRKREATRALLAHGANVQTADENECTPLHS
AASNADAQVVELLLRFGADAATTSAAGSTAAEVIGHNCDGEELQAEDIEQ
LESLLICAGLDDINND*
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mRNA from alignment at Ecto-sp8_S_contig10163:1636..3118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10163.272.1 ID=mRNA_Ecto-sp8_S_contig10163.272.1|Name=mRNA_Ecto-sp8_S_contig10163.272.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1483bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10163:1636..3118+ (Ectocarpus species8 EcLAC_412)
AGGGATGGAAACGGCGATGCTCCTCTTCATATCGCTGGAGCGCGAGGGGA
CGTAGGCCTGGTACGCTTGCTACTGTCAAGCGGGGCTGACCCCAATCTGC
CAGACAGGAAACAACGCACCCCTCTCCATGTCGCAGCCAGGTGCGTTGTT
TGACGCCTCAAATACCAACGACATACGACAGACATGCAACACACACCGAC
ACATCATTTCAAGGTACAAGATTGTAAGGCCTGTTGTGCGTGGAAAGTAG
GAGTACAAAGACACTTGCAGTAGTCTCCAAGGTAAGACCTAACGTCGAAC
CCTTCCACTGTTCAGGAGATAAAACCGTTCGAGGCATCCGCGTCTTGTGC
ACTTTGAATGCTAAAAACAAAGGTATGGCCACGCGGAAACGGCGGGCGCT
TTGCTTTCGGGAGGGGCGTGGGTGAGCCCCTTTCTCGACTCGGAGAGCTG
CTCCCCGCTAGAGCTAGCCGTTCGCCACGGGCATGTGGACGTTGTAGGGG
TCCTTGCCAAGCATGGAGCGGACATGGATGGCGCAGCTTCTACTGGCCTG
ACACTTTTGCACCTTGCTGCCAGTGAAGACATGGTGGACCTACTGCAGTG
CCTCGTAGCAGCGGGGGCTAGCCTGGAATCGCGGGACACGGACGGATCGA
CGGCCCTCCACATCGCCGCCGAAAAAGGCGCGGCGGCCGCAGTTAAGGTC
CTGTTATCACTCGGAGCTCGTCCCTGCGAATTCAACGGCGACGGTCTTTC
TCCCCTCGGTTTAGCTTGCAAGGGTGGCCACCTGCAGGCCGTCCTCGCAA
TTCTGGCGGCGAACCATCGCAACCCCAGAATCGAAAACGACGTCGTGAAC
CTTCGCTTCGGAAGGGAGCCCTCGCCGCTCGAACTGGCTGCCTGCCACGG
CCACGCACACGTCGTGAGGACCATGCTCCGCCACGGCGCGTACGTGGACA
GCAAGGACTGTCCGTACCAGCCGGCGCTGCACCGAGCTGCCGATGGAGGC
CACGTGGACGTGCTAAAAGTGTTGATAGATCACGGAGCGAATTTGGACGC
TGTCGATGCTGACGCAGAAACAGCCCTCCATCACGCAGCAACCTTTGACC
AATCTGGCGCGGTCGACGTTCTCGTCCGGGCTGGCGCCAACATCGAAGCG
GTGGGGGAAGAGTTGTATACGCCTCTCCACCTGGCGTGTCGGTTCCGGAA
ACGCGAGGCCACACGGGCGCTTTTGGCCCACGGGGCAAACGTCCAGACTG
CGGACGAGAACGAATGCACGCCTCTTCACTCGGCCGCGTCCAACGCAGAT
GCTCAAGTAGTGGAGCTTCTGCTAAGGTTCGGGGCAGACGCGGCGACTAC
GTCCGCGGCTGGATCTACAGCTGCGGAGGTTATCGGGCACAACTGTGATG
GAGAGGAGCTTCAAGCCGAGGACATCGAGCAACTGGAAAGTCTCTTGATC
TGCGCTGGACTAGATGACATCAACAATGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10163:1636..3118+

>mRNA_Ecto-sp8_S_contig10163.272.1 ID=mRNA_Ecto-sp8_S_contig10163.272.1|Name=mRNA_Ecto-sp8_S_contig10163.272.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10163:1636..3118+ (Ectocarpus species8 EcLAC_412)
AGGGATGGAAACGGCGATGCTCCTCTTCATATCGCTGGAGCGCGAGGGGA
CGTAGGCCTGGTACGCTTGCTACTGTCAAGCGGGGCTGACCCCAATCTGC
CAGACAGGAAACAACGCACCCCTCTCCATGTCGCAGCCAGGTATGGCCAC
GCGGAAACGGCGGGCGCTTTGCTTTCGGGAGGGGCGTGGGTGAGCCCCTT
TCTCGACTCGGAGAGCTGCTCCCCGCTAGAGCTAGCCGTTCGCCACGGGC
ATGTGGACGTTGTAGGGGTCCTTGCCAAGCATGGAGCGGACATGGATGGC
GCAGCTTCTACTGGCCTGACACTTTTGCACCTTGCTGCCAGTGAAGACAT
GGTGGACCTACTGCAGTGCCTCGTAGCAGCGGGGGCTAGCCTGGAATCGC
GGGACACGGACGGATCGACGGCCCTCCACATCGCCGCCGAAAAAGGCGCG
GCGGCCGCAGTTAAGGTCCTGTTATCACTCGGAGCTCGTCCCTGCGAATT
CAACGGCGACGGTCTTTCTCCCCTCGGTTTAGCTTGCAAGGGTGGCCACC
TGCAGGCCGTCCTCGCAATTCTGGCGGCGAACCATCGCAACCCCAGAATC
GAAAACGACGTCGTGAACCTTCGCTTCGGAAGGGAGCCCTCGCCGCTCGA
ACTGGCTGCCTGCCACGGCCACGCACACGTCGTGAGGACCATGCTCCGCC
ACGGCGCGTACGTGGACAGCAAGGACTGTCCGTACCAGCCGGCGCTGCAC
CGAGCTGCCGATGGAGGCCACGTGGACGTGCTAAAAGTGTTGATAGATCA
CGGAGCGAATTTGGACGCTGTCGATGCTGACGCAGAAACAGCCCTCCATC
ACGCAGCAACCTTTGACCAATCTGGCGCGGTCGACGTTCTCGTCCGGGCT
GGCGCCAACATCGAAGCGGTGGGGGAAGAGTTGTATACGCCTCTCCACCT
GGCGTGTCGGTTCCGGAAACGCGAGGCCACACGGGCGCTTTTGGCCCACG
GGGCAAACGTCCAGACTGCGGACGAGAACGAATGCACGCCTCTTCACTCG
GCCGCGTCCAACGCAGATGCTCAAGTAGTGGAGCTTCTGCTAAGGTTCGG
GGCAGACGCGGCGACTACGTCCGCGGCTGGATCTACAGCTGCGGAGGTTA
TCGGGCACAACTGTGATGGAGAGGAGCTTCAAGCCGAGGACATCGAGCAA
CTGGAAAGTCTCTTGATCTGCGCTGGACTAGATGACATCAACAATGACTG
A
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