mRNA_Ecto-sp8_S_contig101600.268.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101600.268.1
Unique NamemRNA_Ecto-sp8_S_contig101600.268.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: UPI000C78CE06 (neuronal calcium sensor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78CE06)

HSP 1 Score: 112 bits (281), Expect = 2.930e-28
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXE-------RIVLDFQLGDSEEGCLVNSVFSEMDENEDGVIS 453
            L++E +V I  +T +++EQVE +Y+ FL+K+P GRISRKSF  M+ +C+PG  +E+L +   HI+R+YD N+DGHIDF EFM VL+V+S GS E+NL   XXXXXXXXXXXXXXXXX         ++ +  +  +    L NS FSEMDEN+DG I+
Sbjct:   31 LTDEDIVFIARNTAMDQEQVEIRYQNFLSKHPDGRISRKSFHDMMKECYPGTDTEKLEK---HIFRMYDTNDDGHIDFREFMIVLYVLSNGSPEENLXXXXXXXXXXXXXXXXXXXXXXXXXXXFHLINEENVDQASHDVLANSAFSEMDENKDGEIT 185          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A7T8H3D8_CALRO (Neuronal calcium sensor 2 n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H3D8_CALRO)

HSP 1 Score: 107 bits (266), Expect = 1.270e-25
Identity = 72/159 (45.28%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQL--------GDSEEGCLVNSVFSEMDENEDGVIS 453
            LSEE L  I  HT++++ QV+  Y+ FLT +PKG+I+ KSF+ M+ + +P   S+ + +   H++R+YD N+DG IDF EFM +L+V+S G  EDNL+Q XXXXXXXXXXXXX    ++IV D           G  E+  +   VF EMD+++DG I+
Sbjct:   10 LSEEDLSYITSHTSLDRSQVDSYYKNFLTDHPKGKINLKSFKKMIEEAYPD--SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLKQXXXXXXXXXXXXXXMKEMKKIVKDLSALKDPKGPKGKKEQEAMAKGVFKEMDKDDDGAIT 166          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: C1BQB8_CALRO (Neuronal calcium sensor 2 n=3 Tax=Caligus TaxID=217164 RepID=C1BQB8_CALRO)

HSP 1 Score: 104 bits (260), Expect = 2.750e-25
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQL--------GDSEEGCLVNSVFSEMDENEDGVIS 453
            LSEE L  I  HT++++ QV+  Y+ FLT +PKG+I+ KSF+ M+ + +P   S+ + +   H++R+YD N+DG IDF EFM +L+V+S G  EDNL+  XXXXXXXXXXXXX    ++IV D           G  E+  +   VF EMD+++DG I+
Sbjct:   10 LSEEDLSYITSHTSLDRSQVDSYYKNFLTDHPKGKINLKSFKKMIEEAYPD--SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLKXXXXXXXXXXXXXXXMKEMKKIVKDLSALKDPKGPKGKKEQEAMAKGVFKEMDKDDDGTIT 166          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A553PRP0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRP0_TIGCA)

HSP 1 Score: 99.8 bits (247), Expect = 3.920e-23
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLD-FQLGDSEEG-------CLVNSVFSEMDENEDGVIS 453
            L+E+ L  I  HT V +E+V+ +Y  FL K+P G+ISRK F +++  C+P   +++L +   HI+R+YD N+DG IDF EFM VL++MS GS E+NL Q XXXXXXXXXXXXXXXX +RIV D F L   E+         + +  F EMD N DG ++
Sbjct:   35 LTEDDLEFIATHTAVTREEVDAQYESFLRKHPDGQISRKEFSALMRQCYPNADTDKLEK---HIFRMYDSNQDGFIDFREFMIVLYIMSSGSPEENLHQXXXXXXXXXXXXXXXXXLKRIVKDLFHLLSPEDNPEQASKSAMASMAFKEMDTNSDGKVT 190          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A7T8H2H2_CALRO (Neuronal calcium sensor 2 (Fragment) n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H2H2_CALRO)

HSP 1 Score: 95.9 bits (237), Expect = 3.100e-22
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQ 297
            LSEE L  I  HT++++ QV+  Y+ FLT +PKG+I+ KSF+ M+ + +P   S+ + +   H++R+YD N+DG IDF EFM +L+V+S G  EDNL+Q
Sbjct:   10 LSEEDLSYITSHTSLDRSQVDSYYKNFLTDHPKGKINLKSFKKMIEEAYPD--SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLKQ 106          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: D3PFV6_LEPSM (Neuronal calcium sensor 2 n=4 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=D3PFV6_LEPSM)

HSP 1 Score: 94.4 bits (233), Expect = 2.750e-21
Identity = 70/160 (43.75%), Postives = 104/160 (65.00%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQL---------GDSEEGCLVNSVFSEMDENEDGVIS 453
            L +E L  I  HT +++ QV+E +  FL K+P+G+ISRK F+ M+  C+P   ++ + +L  HI+R+YD N DG IDF+EFM +L+V+S G+ E+NL QIXXXXXXXXXXXX     +R++ D             D+++G L  ++F EMD + DG +S
Sbjct:   10 LRDEDLNYISHHTALDRAQVDEYHSNFLAKHPEGQISRKYFKCMILGCYPD--TKHVDKLEKHIFRMYDTNGDGLIDFHEFMIILYVLSSGTPEENLNQIXXXXXXXXXXXXSLREMKRVIKDLYTLFLTKEHSKVDAQKG-LAKNIFEEMDTDLDGRVS 166          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: UPI000C78995B (neuronal calcium sensor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78995B)

HSP 1 Score: 89.0 bits (219), Expect = 3.560e-19
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 1
Query:   34 HTN-VEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGS--ERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQ----LGDSEEGCLVNSVFSEMDENEDGVIS 453
            HT+ + +EQ++ K+  F   +PKG+I RKSF+ ML++ F    +  E + ++  HI+RIYD N DGHIDF EFM V HV+S G+ ED LR+ XXXXXXXXXXXX      R+V D      + +S E  + +S F+EMD + DGV++
Sbjct:   25 HTSGLSEEQIKVKFDAFTADHPKGKIDRKSFRKMLTEAFLHSKNPMEDVEKMEKHIFRIYDTNNDGHIDFIEFMVVFHVLSEGTPEDVLRKXXXXXXXXXXXXXSKKEMLRLVKDLHGLSTVSESRES-IADSAFAEMDNDGDGVVT 170          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: V9P2U7_9MAXI (Neuronal calcium sensor 2 n=1 Tax=Pseudodiaptomus annandalei TaxID=298510 RepID=V9P2U7_9MAXI)

HSP 1 Score: 83.6 bits (205), Expect = 3.960e-17
Identity = 61/159 (38.36%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQLG--------DSEEGCLVNSVFSEMDENEDGVIS 453
            L +E +  +++ + +++EQV E +  F+ ++P G++  K F+ M+S   P   + ++ +   H++RIYD N DG IDF EFM V ++MS GS ++ L + XXXXXXXXXXXX     +RI+ D   G        ++ E  +  S F+EMD NEDG +S
Sbjct:   10 LRDEDVKALVQSSGLDEEQVREHFNAFVAEHPNGKMKMKDFREMMSKALPKKDASKMEK---HVFRIYDSNNDGSIDFQEFMVVFYIMSDGSPDEVLEKXXXXXXXXXXXXXSKKELKRIIKDILSGLIKTDNPEEASEKLITTSAFAEMDTNEDGKVS 165          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A7T8H2P0_CALRO (Neuronal calcium sensor 2 (Fragment) n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H2P0_CALRO)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-16
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 1
Query:   25 IMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQLGDSEEGCLVNSVFSEMDENEDGVIS 453
            I  HT++++ QV+  Y+ FLT +PKG+I+       LSD      S+ + +   H++R+YD N+DG IDF EFM +L+V+S G  EDNL   XXXXXXXXXXXXXX   ++I      G  E+  +   VF EMD+++DG I+
Sbjct:    5 ITSHTSLDRSQVDSYYKNFLTDHPKGKINLN-----LSD------SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLXXXXXXXXXXXXXXXXXKEMKKI------GKKEQEAMAKGVFKEMDKDDDGTIT 130          
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: UPI001F03740D (neurocalcin-delta B-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03740D)

HSP 1 Score: 68.2 bits (165), Expect = 2.660e-11
Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   16 LVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIV--LDFQLGDSEEGCLVNS-----VFSEMDENEDGVIS 453
            L+ ++  T  E++++++ Y++F+ +YP G IS+  F+SM    F   G  R  +   HI+R +D N DG IDF EFM  L V +RGS+E+ L                    E IV  +D  L  + +   ++      VF   D+N+DGV+S
Sbjct:   13 LIHLLNRTKFEEKELKKWYQKFIREYPDGFISKSQFESMYQSFF-SKGDAR--EFADHIFRTFDGNSDGKIDFREFMVSLSVTTRGSAEEKLEWAFKVYDVDGNGFITKKEMELIVRSVDKVLSQNRKAYNLSDIRTDRVFKNFDKNQDGVLS 162          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C78CE062.930e-2851.90neuronal calcium sensor 2-like n=1 Tax=Eurytemora ... [more]
A0A7T8H3D8_CALRO1.270e-2545.28Neuronal calcium sensor 2 n=1 Tax=Caligus rogercre... [more]
C1BQB8_CALRO2.750e-2544.65Neuronal calcium sensor 2 n=3 Tax=Caligus TaxID=21... [more]
A0A553PRP0_TIGCA3.920e-2348.43Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A7T8H2H2_CALRO3.100e-2246.46Neuronal calcium sensor 2 (Fragment) n=1 Tax=Calig... [more]
D3PFV6_LEPSM2.750e-2143.75Neuronal calcium sensor 2 n=4 Tax=Lepeophtheirus s... [more]
UPI000C78995B3.560e-1946.26neuronal calcium sensor 2-like n=1 Tax=Eurytemora ... [more]
V9P2U7_9MAXI3.960e-1738.36Neuronal calcium sensor 2 n=1 Tax=Pseudodiaptomus ... [more]
A0A7T8H2P0_CALRO1.050e-1644.06Neuronal calcium sensor 2 (Fragment) n=1 Tax=Calig... [more]
UPI001F03740D2.660e-1132.03neurocalcin-delta B-like n=1 Tax=Xenia sp. Carnegi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101600contigEcto-sp8_S_contig101600:86..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop0
Start1
Seed ortholog score62.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog59538.XP_005959860.1
Preferred nameRCVRN
Model size453
KEGG koko:K13764
KEGG Pathwayko04744,map04744
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006140,GO:0007154,GO:0007165,GO:0007600,GO:0007601,GO:0007602,GO:0008047,GO:0008048,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010562,GO:0010851,GO:0010853,GO:0010959,GO:0019219,GO:0019220,GO:0019222,GO:0023052,GO:0030234,GO:0030249,GO:0030250,GO:0030425,GO:0030808,GO:0030810,GO:0031279,GO:0031281,GO:0031282,GO:0031284,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032879,GO:0036477,GO:0042995,GO:0043005,GO:0043085,GO:0043167,GO:0043169,GO:0043269,GO:0044093,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045935,GO:0045937,GO:0045981,GO:0046872,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051049,GO:0051171,GO:0051173,GO:0051174,GO:0051339,GO:0051349,GO:0051606,GO:0051716,GO:0051924,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0080090,GO:0097447,GO:0097458,GO:0098772,GO:0120025,GO:0120038,GO:1900371,GO:1900373,GO:1900542,GO:1900544
Exons1
EggNOG free text desc.Recoverin
EggNOG OGs38FEF@33154,3BKIT@33208,3CXSZ@33213,3J5BD@40674,487CS@7711,4944I@7742,4IZ9S@91561,COG5126@1,KOG0044@2759
Cds size426
COG Functional cat.T
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.0348687-UTR-Ecto-sp8_S_contig101600:85..1121681143114.0348687-UTR-Ecto-sp8_S_contig101600:85..112Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig101600 86..112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.0475955-CDS-Ecto-sp8_S_contig101600:112..5381681143114.0475955-CDS-Ecto-sp8_S_contig101600:112..538Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101600 113..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101600.268.1prot_Ecto-sp8_S_contig101600.268.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101600 113..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101600.268.1

>prot_Ecto-sp8_S_contig101600.268.1 ID=prot_Ecto-sp8_S_contig101600.268.1|Name=mRNA_Ecto-sp8_S_contig101600.268.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=142bp
MEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQ
LGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIFRVFDINSD
GKISKEELERIVLDFQLGDSEEGCLVNSVFSEMDENEDGVIS
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mRNA from alignment at Ecto-sp8_S_contig101600:86..538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101600.268.1 ID=mRNA_Ecto-sp8_S_contig101600.268.1|Name=mRNA_Ecto-sp8_S_contig101600.268.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101600:86..538+ (Ectocarpus species8 EcLAC_412)
TTGTCAGAGGAGCACTTGGTTAAGATCATGGAGCACACAAACGTGGAAAA GGAGCAGGTGGAGGAGAAATACCGGCAGTTCCTGACAAAATACCCCAAGG GGAGAATTTCCAGAAAATCTTTCCAGTCAATGCTGTCCGACTGTTTTCCA GGGCTGGGGAGTGAGAGGCTTGGTCAGCTAGGGAGCCATATCTGGAGGAT TTATGATATTAATGAGGATGGTCACATTGACTTCTATGAGTTCATGACTG TGTTGCACGTGATGTCCAGGGGCAGCTCCGAGGACAATCTCAGGCAGATC TTTAGGGTGTTCGATATCAACAGTGATGGGAAGATCAGCAAGGAGGAGCT GGAGAGGATTGTTCTGGATTTCCAGCTTGGAGATTCAGAGGAAGGATGCC TAGTCAACTCAGTTTTCAGTGAGATGGACGAGAATGAAGACGGTGTCATC TCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101600:86..538+

>mRNA_Ecto-sp8_S_contig101600.268.1 ID=mRNA_Ecto-sp8_S_contig101600.268.1|Name=mRNA_Ecto-sp8_S_contig101600.268.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101600:86..538+ (Ectocarpus species8 EcLAC_412)
ATGGAGCACACAAACGTGGAAAAGGAGCAGGTGGAGGAGAAATACCGGCA
GTTCCTGACAAAATACCCCAAGGGGAGAATTTCCAGAAAATCTTTCCAGT
CAATGCTGTCCGACTGTTTTCCAGGGCTGGGGAGTGAGAGGCTTGGTCAG
CTAGGGAGCCATATCTGGAGGATTTATGATATTAATGAGGATGGTCACAT
TGACTTCTATGAGTTCATGACTGTGTTGCACGTGATGTCCAGGGGCAGCT
CCGAGGACAATCTCAGGCAGATCTTTAGGGTGTTCGATATCAACAGTGAT
GGGAAGATCAGCAAGGAGGAGCTGGAGAGGATTGTTCTGGATTTCCAGCT
TGGAGATTCAGAGGAAGGATGCCTAGTCAACTCAGTTTTCAGTGAGATGG
ACGAGAATGAAGACGGTGTCATCTCT
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