mRNA_Ecto-sp8_S_contig10158.261.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10158.261.1
Unique NamemRNA_Ecto-sp8_S_contig10158.261.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10158.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10158contigEcto-sp8_S_contig10158:711..1396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size380
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.4742258-CDS-Ecto-sp8_S_contig10158:712..10031681143113.4742258-CDS-Ecto-sp8_S_contig10158:712..1003Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10158 713..1003 -
1681143113.4819763-CDS-Ecto-sp8_S_contig10158:1309..13961681143113.4819763-CDS-Ecto-sp8_S_contig10158:1309..1396Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10158 1310..1396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10158.261.1prot_Ecto-sp8_S_contig10158.261.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10158 713..1396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10158.261.1

>prot_Ecto-sp8_S_contig10158.261.1 ID=prot_Ecto-sp8_S_contig10158.261.1|Name=mRNA_Ecto-sp8_S_contig10158.261.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=126bp
PAEGECPPGKRNSHRLQNYRRRQRTPLDEEQPELSLRHRSCEPCHSISWA
FNVVFAAKRQQQVPTTPSSSSSGVAFLADKRGPPHALLARHVHCCSDNPP
PPPPLSVSSVHCLCCRSVCLSALFAP
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mRNA from alignment at Ecto-sp8_S_contig10158:711..1396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10158.261.1 ID=mRNA_Ecto-sp8_S_contig10158.261.1|Name=mRNA_Ecto-sp8_S_contig10158.261.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=686bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10158:711..1396- (Ectocarpus species8 EcLAC_412)
CCAGCGGAGGGAGAATGCCCACCCGGGAAACGCAACTCCCATCGCCTACA
GAACTACCGGCGGCGGCAGCGCACTCCGCTCGATGAGGTTAGCCTCGCTC
GTTGCTTGGCTCGTTAGTGTTTGTACGGTCCAAACACACGTTTCACACGT
GTCTTCGATACCTTCCCCATCTGGACCTGTCGCTTTTGGCGTGGTGCCAG
CTCTCGTTTGATTTCTTTGTATTCTTCTTGGCCTTGCGTCTTTTCTTAAT
CATGTCTAGTGCGAGTATCAATTAGAAGTAAATTTTGATATTTCCATGGA
AGGGTTTGCGGGTTTGTACCGGCCGCGGTTTTTCCGGCGACCGGCACTGA
CGGGTTGGTTGCTCACGGAATGCCTGAACCAAATCGCATGCAGGAGCAGC
CAGAGCTGAGTCTTCGACATCGGAGCTGCGAGCCATGCCATTCGATATCG
TGGGCTTTCAATGTTGTTTTCGCGGCTAAACGGCAGCAGCAAGTACCCAC
GACTCCTTCATCATCATCATCAGGCGTTGCGTTTTTGGCTGACAAGAGAG
GCCCGCCGCACGCGTTGCTTGCGCGGCATGTCCACTGCTGTTCCGATAAC
CCTCCTCCTCCGCCTCCTTTAAGCGTGTCTTCTGTTCATTGTCTGTGTTG
TCGGTCTGTCTGTCTTTCTGCCTTGTTTGCCCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10158:711..1396-

>mRNA_Ecto-sp8_S_contig10158.261.1 ID=mRNA_Ecto-sp8_S_contig10158.261.1|Name=mRNA_Ecto-sp8_S_contig10158.261.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10158:711..1396- (Ectocarpus species8 EcLAC_412)
CCAGCGGAGGGAGAATGCCCACCCGGGAAACGCAACTCCCATCGCCTACA
GAACTACCGGCGGCGGCAGCGCACTCCGCTCGATGAGGAGCAGCCAGAGC
TGAGTCTTCGACATCGGAGCTGCGAGCCATGCCATTCGATATCGTGGGCT
TTCAATGTTGTTTTCGCGGCTAAACGGCAGCAGCAAGTACCCACGACTCC
TTCATCATCATCATCAGGCGTTGCGTTTTTGGCTGACAAGAGAGGCCCGC
CGCACGCGTTGCTTGCGCGGCATGTCCACTGCTGTTCCGATAACCCTCCT
CCTCCGCCTCCTTTAAGCGTGTCTTCTGTTCATTGTCTGTGTTGTCGGTC
TGTCTGTCTTTCTGCCTTGTTTGCCCCG
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