mRNA_Ecto-sp8_S_contig10157.259.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10157.259.1
Unique NamemRNA_Ecto-sp8_S_contig10157.259.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10157.259.1 vs. uniprot
Match: A0A6H5JP88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP88_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.610e-42
Identity = 81/96 (84.38%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 DDDATTLITDGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDAGGTCSNLELSLLDDDHAAAASTTMPGGERASPRWNSGNRAEQRATT 288
            DDD TTL+ DGRDS +QQ QCRPADDL DESFLGVPIFRGDVV + EED GG  SNLELS LDDDHAAAASTTMPGGERASP WNSGNRAEQRATT
Sbjct:   44 DDDVTTLVADGRDSWKQQ-QCRPADDLADESFLGVPIFRGDVVRDTEEDGGG--SNLELSFLDDDHAAAASTTMPGGERASPTWNSGNRAEQRATT 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10157.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP88_9PHAE3.610e-4284.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10157contigEcto-sp8_S_contig10157:6354..6641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001200.1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.4445386-CDS-Ecto-sp8_S_contig10157:6353..66411681143113.4445386-CDS-Ecto-sp8_S_contig10157:6353..6641Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10157 6354..6641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10157.259.1prot_Ecto-sp8_S_contig10157.259.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10157 6354..6641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10157.259.1

>prot_Ecto-sp8_S_contig10157.259.1 ID=prot_Ecto-sp8_S_contig10157.259.1|Name=mRNA_Ecto-sp8_S_contig10157.259.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
DDDATTLITDGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDA
GGTCSNLELSLLDDDHAAAASTTMPGGERASPRWNSGNRAEQRATT
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mRNA from alignment at Ecto-sp8_S_contig10157:6354..6641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10157.259.1 ID=mRNA_Ecto-sp8_S_contig10157.259.1|Name=mRNA_Ecto-sp8_S_contig10157.259.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10157:6354..6641+ (Ectocarpus species8 EcLAC_412)
GACGACGACGCCACGACTCTAATAACCGACGGCAGGGACAGCCGGCAGCA
GCAGCAGCAATGCCGTCCAGCAGACGACCTGCCTGACGAGTCCTTCCTGG
GCGTGCCGATATTCCGAGGCGATGTCGTACTCGAGGCTGAGGAAGATGCC
GGCGGTACATGTAGCAATCTGGAGCTGTCCTTGTTGGACGACGACCACGC
CGCAGCAGCGTCGACGACGATGCCGGGAGGCGAGAGGGCATCTCCTAGAT
GGAACAGTGGCAACCGCGCCGAACAACGAGCAACAACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10157:6354..6641+

>mRNA_Ecto-sp8_S_contig10157.259.1 ID=mRNA_Ecto-sp8_S_contig10157.259.1|Name=mRNA_Ecto-sp8_S_contig10157.259.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10157:6354..6641+ (Ectocarpus species8 EcLAC_412)
GACGACGACGCCACGACTCTAATAACCGACGGCAGGGACAGCCGGCAGCA
GCAGCAGCAATGCCGTCCAGCAGACGACCTGCCTGACGAGTCCTTCCTGG
GCGTGCCGATATTCCGAGGCGATGTCGTACTCGAGGCTGAGGAAGATGCC
GGCGGTACATGTAGCAATCTGGAGCTGTCCTTGTTGGACGACGACCACGC
CGCAGCAGCGTCGACGACGATGCCGGGAGGCGAGAGGGCATCTCCTAGAT
GGAACAGTGGCAACCGCGCCGAACAACGAGCAACAACG
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