mRNA_Ecto-sp8_S_contig101569.257.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101569.257.1
Unique NamemRNA_Ecto-sp8_S_contig101569.257.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101569.257.1 vs. uniprot
Match: D7FV52_ECTSI (C2H2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV52_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 6.980e-20
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   13 SSQAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKE 144
            S +AFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKE
Sbjct:  165 SFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKE 208
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BLAST of mRNA_Ecto-sp8_S_contig101569.257.1 vs. uniprot
Match: A0A6H5KYR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-19
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:   13 SSQAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKE 144
            S +AFMAEQRDDVTPEEC QRYDEYKADYVQRLTHSFIDVHCKE
Sbjct:  165 SFKAFMAEQRDDVTPEECNQRYDEYKADYVQRLTHSFIDVHCKE 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101569.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV52_ECTSI6.980e-2095.45C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYR2_9PHAE3.310e-1993.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101569contigEcto-sp8_S_contig101569:2..163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score90.9
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D7FV52
Preferred nameSRRT
Model size162
KEGG koko:K15196
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006325,GO:0006342,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0009058,GO:0009059,GO:0009301,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010720,GO:0014070,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0022008,GO:0030154,GO:0030422,GO:0031047,GO:0031048,GO:0031050,GO:0031053,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033168,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036404,GO:0040029,GO:0042221,GO:0042742,GO:0042795,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0043900,GO:0043901,GO:0043903,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045069,GO:0045071,GO:0045595,GO:0045597,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046685,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097150,GO:0097159,GO:0097659,GO:0098542,GO:0098727,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902679,GO:1903506,GO:1903507,GO:1903900,GO:1903901,GO:1990477,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.primary miRNA processing
EggNOG OGsKOG2295@1,KOG2295@2759
Cds size162
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.3323646-CDS-Ecto-sp8_S_contig101569:1..1631681143113.3323646-CDS-Ecto-sp8_S_contig101569:1..163Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101569 2..163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101569.257.1prot_Ecto-sp8_S_contig101569.257.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101569 2..163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101569.257.1

>prot_Ecto-sp8_S_contig101569.257.1 ID=prot_Ecto-sp8_S_contig101569.257.1|Name=mRNA_Ecto-sp8_S_contig101569.257.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
MSWFSSQAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEVS
PNK*
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mRNA from alignment at Ecto-sp8_S_contig101569:2..163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101569.257.1 ID=mRNA_Ecto-sp8_S_contig101569.257.1|Name=mRNA_Ecto-sp8_S_contig101569.257.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101569:2..163- (Ectocarpus species8 EcLAC_412)
ATGTCCTGGTTCTCTTCGCAGGCGTTCATGGCGGAGCAGCGCGACGATGT
GACACCAGAGGAATGCAAGCAGCGCTACGACGAGTACAAGGCCGACTACG
TGCAACGTCTGACACACAGCTTCATTGATGTGCACTGCAAAGAAGTAAGT
CCGAACAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101569:2..163-

>mRNA_Ecto-sp8_S_contig101569.257.1 ID=mRNA_Ecto-sp8_S_contig101569.257.1|Name=mRNA_Ecto-sp8_S_contig101569.257.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101569:2..163- (Ectocarpus species8 EcLAC_412)
ATGTCCTGGTTCTCTTCGCAGGCGTTCATGGCGGAGCAGCGCGACGATGT
GACACCAGAGGAATGCAAGCAGCGCTACGACGAGTACAAGGCCGACTACG
TGCAACGTCTGACACACAGCTTCATTGATGTGCACTGCAAAGAAGTAAGT
CCGAACAAGTAG
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