mRNA_Ecto-sp8_S_contig10156.254.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10156.254.1
Unique NamemRNA_Ecto-sp8_S_contig10156.254.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10156.254.1 vs. uniprot
Match: D8LBV1_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.480e-96
Identity = 236/263 (89.73%), Postives = 243/263 (92.40%), Query Frame = 1 
Query:    1 QGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXX-FNFLNKTMHSXXXXXXXXXXXXXXXXSPLPGRRIRPLFESGGVSSSYSSASSXXSIPTATTATGAGTAHPLRKSGVFSDKKRDGGXXXXXXXXXXXXXARMSQADLRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXXKAGLFSF 786
            QGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXX FNFLNKTMH+         XXXXXX SPLPG+RIRPLF++GG S S S+A+S  SIPTATTA GAGTAH LRKSGVF DKKRDGGXXXXXXXXXXXXX RMSQA+LRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXXKAGLFSF
Sbjct:   58 QGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKAEGXXXXXXASPLPGQRIRPLFDAGGASYSSSAATST-SIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXXKAGLFSF 319
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BLAST of mRNA_Ecto-sp8_S_contig10156.254.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.230e-75
Identity = 198/243 (81.48%), Postives = 205/243 (84.36%), Query Frame = 1 
Query:    1 QGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXX-FNFLNKTMHSXXXXXXXXXXXXXXXXSPLPGRRIRPLFESGGVSSSYSSASSXXSIPTATTATGAGTAHPLRKSGVFSDKKRDGGXXXXXXXXXXXXXARMSQADLRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG 726
            QGISRPVPIRVLPERRTLDHLRVDDVGGGK+ARSVGGDG XXXXXXXXXXXXXXXXXXXXXXXXXXXX FNFLNKTMH+    XXXXXXXXXXXX        R LF++GG S    ++SS  SIPTATTATGAGTAHPLRKSGV SD  RDGG             ARMSQA+LRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG
Sbjct:  393 QGISRPVPIRVLPERRTLDHLRVDDVGGGKSARSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSCASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRAGVGGAAARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG 635
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10156.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBV1_ECTSI2.480e-9689.73G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KPC0_9PHAE1.230e-7581.48Zinc finger CCCH-type with G patch domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10156contigEcto-sp8_S_contig10156:409..2839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score265.4
Seed ortholog evalue2.1e-68
Seed eggNOG ortholog2880.D8LBV1
Model size1759
KEGG koko:K17569
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.negative regulation of epidermal growth factor-activated receptor activity
EggNOG OGsKOG2185@1,KOG2185@2759
Ec32 ortholog descriptionG-patch domain protein
Ec32 orthologEc-27_002590.1
Cds size588
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.1782792-UTR-Ecto-sp8_S_contig10156:408..6091681143113.1782792-UTR-Ecto-sp8_S_contig10156:408..609Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10156 409..609 +
1681143113.2111416-UTR-Ecto-sp8_S_contig10156:1869..28391681143113.2111416-UTR-Ecto-sp8_S_contig10156:1869..2839Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10156 1870..2839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.1906965-CDS-Ecto-sp8_S_contig10156:609..10171681143113.1906965-CDS-Ecto-sp8_S_contig10156:609..1017Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10156 610..1017 +
1681143113.2001002-CDS-Ecto-sp8_S_contig10156:1689..18691681143113.2001002-CDS-Ecto-sp8_S_contig10156:1689..1869Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10156 1690..1869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10156.254.1prot_Ecto-sp8_S_contig10156.254.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10156 610..1869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10156.254.1

>prot_Ecto-sp8_S_contig10156.254.1 ID=prot_Ecto-sp8_S_contig10156.254.1|Name=mRNA_Ecto-sp8_S_contig10156.254.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=196bp
MFNFLNKTMHSSMRKRKAEGGGAAAAASPLPGRRIRPLFESGGVSSSYSS
ASSSTSIPTATTATGAGTAHPLRKSGVFSDKKRDGGGAGAGGAAAAAAAA
RMSQADLRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKL
KQVCQQAKEVRDSRGRAERALENRGGGGGKGGGRKGGGKAGLFSF*
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mRNA from alignment at Ecto-sp8_S_contig10156:409..2839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10156.254.1 ID=mRNA_Ecto-sp8_S_contig10156.254.1|Name=mRNA_Ecto-sp8_S_contig10156.254.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2431bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10156:409..2839+ (Ectocarpus species8 EcLAC_412)
CAGGGAATCTCCCGACCGGTTCCCATCCGTGTTCTACCCGAGCGCCGGAC
CTTAGACCACCTCAGAGTTGACGATGTCGGGGGGGGCAAGACGGCGCGCT
CCGTCGGCGGCGACGGCAAGAAAAAGAACAAGAAGAAAAAGGACAACAAC
AACAACAAGCCTGGCGGCAGCAGCGGCGGCGGCGGCGGCGGTGGCGGCGG
GATGTTCAACTTCCTGAACAAGACCATGCACTCGTCAATGAGGAAGCGGA
AAGCCGAGGGCGGCGGCGCAGCAGCGGCTGCCTCGCCGCTCCCCGGGCGG
AGAATACGACCCCTGTTCGAATCGGGAGGGGTTTCTTCTTCTTACTCTTC
TGCTTCTTCTTCGACCTCTATCCCGACAGCTACTACGGCCACCGGGGCCG
GCACCGCCCACCCGCTAAGAAAATCTGGGGTGTTTTCCGACAAGAAGAGG
GACGGCGGGGGAGCGGGAGCCGGGGGAGCGGCGGCGGCGGCGGCGGCGGC
GAGGATGTCTCAGGCGGACCTCAGGTCGCACCTCGTCGGGGCCCGCGAGG
CCGAGGCGACGCTGGCGGCAAAGATCGGGCGGTTGAAGGAAACTATCTCC
CGCAACGAGGTGCGTAGAATAGTTTGTATGCGTACCACCTACAATACCGC
GTGCCGTAGGGTGTTTATTGCCCCCGGGGGGGTTGTTTGGTTTTGACGGC
AGTTTACTGGACTACCGTGCCCTCGTGGGACAAAGGAAACCAGGTTTCAG
GGCCCAGCCTACAGAAGTACGTTTTGGAATCGGCACTGCTTGTGCGTGCC
ATACTGTACGTGAGATTTTTTGTTTGTTTGTGTGGAGGAACACCTTGCCA
CGGAGGCTCGGTCGGGGCCTCTTCGTGGTTTGCCGAGATCCCATCGCCCC
CTCTCTCTCCGAACGTACGTTCCAACGAGAGGGCCGTTGCTGCGGTGAAC
AACGGCAAGGTCAAAACCACTTCCTCCCGTAGAAACCACTTCCTCCAAAC
GCTGCTACCGCAGCAGGGAGAAAGAGGAGCACTGATGCGAGCAAATAGTT
GCATCTCTGTGAGCACGAGAGGATCCGGTACGACTCCCACCAATACCGCT
TGCCGCGCTACTAAAGAGGTACGGTATGTTACCGTGTACCCCTGCCGTCC
CCCTCCGCCATTGCGTCCGCTTCGACCACCAACGTGAAGGGCTACTTCGC
CCATTGCATTTGCTTTTCAAACACTAACGGGAGCGCCTACATTCACCCTC
CTGCCTCCTCTCTTCGCGGCTACATACACAGGAACTAGATCCGAGGACTG
CTGCACAGGCGAGGCAGAAGCTCAAGCAGGTCTGCCAGCAGGCCAAGGAA
GTCCGGGACAGCAGGGGCCGGGCGGAGAGGGCTCTCGAGAACCGCGGCGG
GGGGGGGGGCAAGGGCGGCGGCAGGAAGGGGGGCGGGAAGGCCGGTCTGT
TTTCGTTTTGACCAATCACGTATCTGGGTGCCACTTGCGAGAGTCCGCGC
AGAAGGGGAGCTTACTGGGCAGGCAGGCACTTTCGTTACCGCCGCCGCAG
CCCCCGCCGCCCGTACCATCCAGACGGAAGGCCGCGGGGAAGATGCGTAA
TAGCTGTAGTAGCGTCAGGCTGTGTGTAGCCCTGAGCGGTCGTTGCACCT
GCTTCTTCTTTCTCTCCGCCCGTTTGGAACGGATCGGAGGGATGGCGGAG
CTTTTTCTTCGCCAAACCAAAAAGTAAAAATGCAGCAAATAAATGTCATT
GTGGAAATAAGTAGCTCTGTTTCAGCGCGTGGTGTGTTCATTGCCGCAGT
AGTGTTTCAGGGTGGATATATGTGTGGATGTCTCCGGTGTCTTTCATCGG
AAAACGTGCAATGATACCGTACCATGATATGGTAGTTTTTTTGCGCTCAC
GAATCAACGTACAGCAAATAGAGGTGATTCGCGATGTGGGAAATGTATGT
ACTGTAGTCCAGTGTGCAATACGGTGTGATACGGATTAATTACGCGATAT
GTATATTGTAGCCGAGAGAAGGATGTACACATAACATCCTGAAACAAGGT
GTGTGTGTGTAAAGAGCGCGGTGTGAATTACTTACCGGAGACGATGGTTT
GGGCGTTCCAATGTACGCGTGGAGGCGCGTATGGGTAGAGAGTGTTTGAC
ACTACTACTACTGCCGCTCACTTGCGTCAGGAATCAATCTTAAAAACTCG
TGATGGCAATCGAATGAATACGTCAGGGTCTTTGCCAAGAAGAGCAATAA
TAATACTTTGCCTCTGGTGCGCATGCTTTGTGGCTGCAATGCGGTCTGCA
CGAACGACGCCAGGTGGCGAGTCGGGATGAAGACTTGGATTTGATTGTGA
TTGTGTCAGGCTAACTTTAAGACTCCGGATTGGTAATGATTGTGTTGAGG
GTATAACTTCACAGCACGCACTAACTACCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10156:409..2839+

>mRNA_Ecto-sp8_S_contig10156.254.1 ID=mRNA_Ecto-sp8_S_contig10156.254.1|Name=mRNA_Ecto-sp8_S_contig10156.254.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10156:409..2839+ (Ectocarpus species8 EcLAC_412)
ATGTTCAACTTCCTGAACAAGACCATGCACTCGTCAATGAGGAAGCGGAA
AGCCGAGGGCGGCGGCGCAGCAGCGGCTGCCTCGCCGCTCCCCGGGCGGA
GAATACGACCCCTGTTCGAATCGGGAGGGGTTTCTTCTTCTTACTCTTCT
GCTTCTTCTTCGACCTCTATCCCGACAGCTACTACGGCCACCGGGGCCGG
CACCGCCCACCCGCTAAGAAAATCTGGGGTGTTTTCCGACAAGAAGAGGG
ACGGCGGGGGAGCGGGAGCCGGGGGAGCGGCGGCGGCGGCGGCGGCGGCG
AGGATGTCTCAGGCGGACCTCAGGTCGCACCTCGTCGGGGCCCGCGAGGC
CGAGGCGACGCTGGCGGCAAAGATCGGGCGGTTGAAGGAAACTATCTCCC
GCAACGAGGAACTAGATCCGAGGACTGCTGCACAGGCGAGGCAGAAGCTC
AAGCAGGTCTGCCAGCAGGCCAAGGAAGTCCGGGACAGCAGGGGCCGGGC
GGAGAGGGCTCTCGAGAACCGCGGCGGGGGGGGGGGCAAGGGCGGCGGCA
GGAAGGGGGGCGGGAAGGCCGGTCTGTTTTCGTTTTGA
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