mRNA_Ecto-sp8_S_contig101542.251.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A0U2UEZ0_ACAPC (Cellular retinoic acid-binding protein 2 n=3 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2UEZ0_ACAPC) HSP 1 Score: 199 bits (505), Expect = 2.120e-63 Identity = 104/138 (75.36%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
MD+FKGK+ER SAE YE+FLKALDVN LLRKAATVSTP + +SE DGVWTIKTSTTLK+MELKFK+GEEF+ETT DGR+V A+V+ + K V QKAKK+GQKSTKSIRE NG DE +YTMTIDG+D L CVQKFKRV
Sbjct: 1 MDSFKGKYERVSAENYEEFLKALDVNFLLRKAATVSTPVMEVSEEDGVWTIKTSTTLKTMELKFKVGEEFDETTPDGREVKAIVTLDGNKFVCEQKAKKEGQKSTKSIREFNG-DECIYTMTIDGMD-LVCVQKFKRV 136
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: UPI000C788E8B (fatty acid-binding protein-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C788E8B) HSP 1 Score: 198 bits (503), Expect = 4.410e-63 Identity = 104/138 (75.36%), Postives = 117/138 (84.78%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
MDAFKGK+ER SAE YE+FLK LDVN LLRKAATVSTP + +SE GVWTIKTSTTLKSMELKFK+GEEFEETTADGR+V+A V + K V+ QKAKKDGQKSTK+IRE NG DE+V TMT+DG D L CVQKFKR+
Sbjct: 1 MDAFKGKYERVSAENYEEFLKELDVNFLLRKAATVSTPVMEVSEEGGVWTIKTSTTLKSMELKFKVGEEFEETTADGREVTAKVIVDGNKFVSEQKAKKDGQKSTKTIREFNG-DEVVQTMTVDGNDSLVCVQKFKRI 137
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A0U2TK48_9MAXI (Cellular retinoic acid-binding protein 2 n=4 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2TK48_9MAXI) HSP 1 Score: 197 bits (501), Expect = 8.890e-63 Identity = 101/138 (73.19%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
MD+FKGK+ER SA+ YE+FLKAL V +LLRKAATVSTP + +SE +G WTIKTSTTLK+MELKFK+GEEF+ETT DGR V+A+V+ + K+VTVQKAKKDG STKS+RE NG DE+VYTMTIDG DDL CVQKFKRV
Sbjct: 1 MDSFKGKYERVSADNYEEFLKALGVGLLLRKAATVSTPVMEVSEENGTWTIKTSTTLKTMELKFKIGEEFDETTPDGRDVTALVTLDGNKLVTVQKAKKDGVASTKSVREFNG-DEVVYTMTIDGNDDLVCVQKFKRV 137
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A553P9U0_TIGCA (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9U0_TIGCA) HSP 1 Score: 149 bits (375), Expect = 1.250e-43 Identity = 79/136 (58.09%), Postives = 106/136 (77.94%), Query Frame = 1
Query: 7 AFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
+++GK++RTSAE YE+ LKAL+VN LLRKAATVS+P + ++ W+ KTST +KSMELKFKLGEEF+ETT DGR+V A+V+ + K ++VQ AKK+G+KSTK++RE G DE++ T+ I G DL C Q FKRV
Sbjct: 2 SYQGKYQRTSAENYEELLKALNVNYLLRKAATVSSPVLEVTGEGEEWSFKTSTAIKSMELKFKLGEEFDETTPDGREVRALVTKDGDKFISVQTAKKEGEKSTKTVREFKG-DEVIQTIEIVG-GDLVCTQVFKRV 135
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: UPI000C78B31A (cellular retinoic acid-binding protein 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78B31A) HSP 1 Score: 137 bits (346), Expect = 3.080e-39 Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKR 411
M F GKF R SAE Y++FLKAL+V +LRKAAT STP + I+E+DG W++KTST++KSMELKFKLGE FEE T+DGR+ + V+ E K++T QKA K G+K +++RE D+L+ +MT DGV T Q +KR
Sbjct: 1 MVQFTGKFTRVSAENYDEFLKALNVGFILRKAATASTPVMEITESDGNWSMKTSTSMKSMELKFKLGEPFEEETSDGRKCTTTVTMEGNKLITDQKAIKKGEKDVRAVREFFD-DKLIISMTCDGV---TSTQVYKR 133
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A7TZ46_LEPSM (Cellular retinoic acid binding protein 2 [Jaculus jaculus] n=3 Tax=Caligidae TaxID=72034 RepID=A7TZ46_LEPSM) HSP 1 Score: 125 bits (313), Expect = 3.430e-34 Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGK--IVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKR 411
M+AF GK+ R S+EKYED LK L VN+LLRKAA VSTP+ +S+ VW+ KTST KSMELKF++G++FEETT+DGR V +V+ DG V+ Q AKKDGQKSTK++R+ T + D+ C Q F++
Sbjct: 1 MEAFMGKYNRISSEKYEDLLKELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTL-DGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGS--DVKCTQVFEK 136
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: C1BNR5_CALRO (Cellular retinoic acid-binding protein 2 n=4 Tax=Caligidae TaxID=72034 RepID=C1BNR5_CALRO) HSP 1 Score: 123 bits (309), Expect = 1.430e-33 Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDG-KIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKR 411
M+AF GK+ R +E YED LK L VN+LLRKAA VSTPT +S+ VW+ KTST KSM+LKF++G++FEETT+DGR V +V+ E K V+ Q AKKDG KSTK+IR+ T + D+ C Q F++
Sbjct: 1 MEAFMGKYNRVKSENYEDLLKELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTVAKSMKLKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGS--DVKCTQVFEK 136
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A7R9BUE6_9CRUS (Hypothetical protein n=2 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BUE6_9CRUS) HSP 1 Score: 108 bits (271), Expect = 7.860e-28 Identity = 59/139 (42.45%), Postives = 92/139 (66.19%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISE-NDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
MD GK++ S+E ++D++KAL V ++LR A V+TPT+ S+ +D WT+ TS T +++E+KFKL EEFEE T DGR+ + SFE+G ++T ++ KDG K+++ IR G D T+ VDD+ C + +K+V
Sbjct: 4 MDCIIGKWKMVSSENFDDYMKALGVGIVLRNLANVATPTIEFSKGDDDTWTMTTSATFRTVEIKFKLNEEFEEVTGDGRKCATTFSFENG-VLTQKQVGKDGSKNSELIRTFKGDD----LTTVLKVDDVVCTRVYKKV 137
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: F1AQ56_PROCL (Fatty acid binding protein n=2 Tax=Procambarus clarkii TaxID=6728 RepID=F1AQ56_PROCL) HSP 1 Score: 107 bits (266), Expect = 4.360e-27 Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDG-QKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
M GK++ S+E ++DF+KAL V +++RK +TPTV IS D V+T+KT+TT K+ E+KFKLGEEFEETTADGR V + ++ E K++ QK ++ +KS+ RE + L+ VDD+ C + +KR+
Sbjct: 1 MAKIAGKYKMESSENFDDFMKALGVGLVMRKMGNAATPTVEISLEDDVYTMKTTTTFKTTEVKFKLGEEFEETTADGRNVKSTITLEGNKMIHNQKGDEEKKEKSSVLTREFTETEMLMECK----VDDIVCKRVYKRL 135
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A8K0NXJ2_LADFU (Uncharacterized protein n=2 Tax=Odonata TaxID=6961 RepID=A0A8K0NXJ2_LADFU) HSP 1 Score: 107 bits (266), Expect = 8.950e-27 Identity = 59/136 (43.38%), Postives = 90/136 (66.18%), Query Frame = 1
Query: 1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFK 408
MD KF+ S+E +++++KAL V ++ RK TPTV ++E DGV+TIKT++T K+ E+ FKLGEEF+E T DGR+V +VV+ + K++ +QK G+K T IRE +G DE+ + VDD+ C + +K
Sbjct: 33 MDFLNKKFKMVSSENFDEYMKALGVGLVTRKMGNAVTPTVEVTEKDGVFTIKTTSTFKNSEINFKLGEEFDEETVDGRKVKSVVTKDGNKLIHLQK----GEKETTIIREFSG-DEMKAILK---VDDIVCTRVYK 160 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101542.251.1 >prot_Ecto-sp8_S_contig101542.251.1 ID=prot_Ecto-sp8_S_contig101542.251.1|Name=mRNA_Ecto-sp8_S_contig101542.251.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=139bp MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTback to top mRNA from alignment at Ecto-sp8_S_contig101542:61..477+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101542.251.1 ID=mRNA_Ecto-sp8_S_contig101542.251.1|Name=mRNA_Ecto-sp8_S_contig101542.251.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101542:61..477+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101542:61..477+ >mRNA_Ecto-sp8_S_contig101542.251.1 ID=mRNA_Ecto-sp8_S_contig101542.251.1|Name=mRNA_Ecto-sp8_S_contig101542.251.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101542:61..477+ (Ectocarpus species8 EcLAC_412)back to top |