mRNA_Ecto-sp8_S_contig101542.251.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101542.251.1
Unique NamemRNA_Ecto-sp8_S_contig101542.251.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A0U2UEZ0_ACAPC (Cellular retinoic acid-binding protein 2 n=3 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2UEZ0_ACAPC)

HSP 1 Score: 199 bits (505), Expect = 2.120e-63
Identity = 104/138 (75.36%), Postives = 119/138 (86.23%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
            MD+FKGK+ER SAE YE+FLKALDVN LLRKAATVSTP + +SE DGVWTIKTSTTLK+MELKFK+GEEF+ETT DGR+V A+V+ +  K V  QKAKK+GQKSTKSIRE NG DE +YTMTIDG+D L CVQKFKRV
Sbjct:    1 MDSFKGKYERVSAENYEEFLKALDVNFLLRKAATVSTPVMEVSEEDGVWTIKTSTTLKTMELKFKVGEEFDETTPDGREVKAIVTLDGNKFVCEQKAKKEGQKSTKSIREFNG-DECIYTMTIDGMD-LVCVQKFKRV 136          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: UPI000C788E8B (fatty acid-binding protein-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C788E8B)

HSP 1 Score: 198 bits (503), Expect = 4.410e-63
Identity = 104/138 (75.36%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
            MDAFKGK+ER SAE YE+FLK LDVN LLRKAATVSTP + +SE  GVWTIKTSTTLKSMELKFK+GEEFEETTADGR+V+A V  +  K V+ QKAKKDGQKSTK+IRE NG DE+V TMT+DG D L CVQKFKR+
Sbjct:    1 MDAFKGKYERVSAENYEEFLKELDVNFLLRKAATVSTPVMEVSEEGGVWTIKTSTTLKSMELKFKVGEEFEETTADGREVTAKVIVDGNKFVSEQKAKKDGQKSTKTIREFNG-DEVVQTMTVDGNDSLVCVQKFKRI 137          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A0U2TK48_9MAXI (Cellular retinoic acid-binding protein 2 n=4 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2TK48_9MAXI)

HSP 1 Score: 197 bits (501), Expect = 8.890e-63
Identity = 101/138 (73.19%), Postives = 119/138 (86.23%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
            MD+FKGK+ER SA+ YE+FLKAL V +LLRKAATVSTP + +SE +G WTIKTSTTLK+MELKFK+GEEF+ETT DGR V+A+V+ +  K+VTVQKAKKDG  STKS+RE NG DE+VYTMTIDG DDL CVQKFKRV
Sbjct:    1 MDSFKGKYERVSADNYEEFLKALGVGLLLRKAATVSTPVMEVSEENGTWTIKTSTTLKTMELKFKIGEEFDETTPDGRDVTALVTLDGNKLVTVQKAKKDGVASTKSVREFNG-DEVVYTMTIDGNDDLVCVQKFKRV 137          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A553P9U0_TIGCA (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9U0_TIGCA)

HSP 1 Score: 149 bits (375), Expect = 1.250e-43
Identity = 79/136 (58.09%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    7 AFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
            +++GK++RTSAE YE+ LKAL+VN LLRKAATVS+P + ++     W+ KTST +KSMELKFKLGEEF+ETT DGR+V A+V+ +  K ++VQ AKK+G+KSTK++RE  G DE++ T+ I G  DL C Q FKRV
Sbjct:    2 SYQGKYQRTSAENYEELLKALNVNYLLRKAATVSSPVLEVTGEGEEWSFKTSTAIKSMELKFKLGEEFDETTPDGREVRALVTKDGDKFISVQTAKKEGEKSTKTVREFKG-DEVIQTIEIVG-GDLVCTQVFKRV 135          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: UPI000C78B31A (cellular retinoic acid-binding protein 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78B31A)

HSP 1 Score: 137 bits (346), Expect = 3.080e-39
Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKR 411
            M  F GKF R SAE Y++FLKAL+V  +LRKAAT STP + I+E+DG W++KTST++KSMELKFKLGE FEE T+DGR+ +  V+ E  K++T QKA K G+K  +++RE    D+L+ +MT DGV   T  Q +KR
Sbjct:    1 MVQFTGKFTRVSAENYDEFLKALNVGFILRKAATASTPVMEITESDGNWSMKTSTSMKSMELKFKLGEPFEEETSDGRKCTTTVTMEGNKLITDQKAIKKGEKDVRAVREFFD-DKLIISMTCDGV---TSTQVYKR 133          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A7TZ46_LEPSM (Cellular retinoic acid binding protein 2 [Jaculus jaculus] n=3 Tax=Caligidae TaxID=72034 RepID=A7TZ46_LEPSM)

HSP 1 Score: 125 bits (313), Expect = 3.430e-34
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGK--IVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKR 411
            M+AF GK+ R S+EKYED LK L VN+LLRKAA VSTP+  +S+   VW+ KTST  KSMELKF++G++FEETT+DGR V  +V+  DG    V+ Q AKKDGQKSTK++R+         T  +    D+ C Q F++
Sbjct:    1 MEAFMGKYNRISSEKYEDLLKELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTL-DGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGS--DVKCTQVFEK 136          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: C1BNR5_CALRO (Cellular retinoic acid-binding protein 2 n=4 Tax=Caligidae TaxID=72034 RepID=C1BNR5_CALRO)

HSP 1 Score: 123 bits (309), Expect = 1.430e-33
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDG-KIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKR 411
            M+AF GK+ R  +E YED LK L VN+LLRKAA VSTPT  +S+   VW+ KTST  KSM+LKF++G++FEETT+DGR V  +V+ E   K V+ Q AKKDG KSTK+IR+         T  +    D+ C Q F++
Sbjct:    1 MEAFMGKYNRVKSENYEDLLKELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTVAKSMKLKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGS--DVKCTQVFEK 136          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A7R9BUE6_9CRUS (Hypothetical protein n=2 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BUE6_9CRUS)

HSP 1 Score: 108 bits (271), Expect = 7.860e-28
Identity = 59/139 (42.45%), Postives = 92/139 (66.19%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISE-NDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
            MD   GK++  S+E ++D++KAL V ++LR  A V+TPT+  S+ +D  WT+ TS T +++E+KFKL EEFEE T DGR+ +   SFE+G ++T ++  KDG K+++ IR   G D      T+  VDD+ C + +K+V
Sbjct:    4 MDCIIGKWKMVSSENFDDYMKALGVGIVLRNLANVATPTIEFSKGDDDTWTMTTSATFRTVEIKFKLNEEFEEVTGDGRKCATTFSFENG-VLTQKQVGKDGSKNSELIRTFKGDD----LTTVLKVDDVVCTRVYKKV 137          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: F1AQ56_PROCL (Fatty acid binding protein n=2 Tax=Procambarus clarkii TaxID=6728 RepID=F1AQ56_PROCL)

HSP 1 Score: 107 bits (266), Expect = 4.360e-27
Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDG-QKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV 414
            M    GK++  S+E ++DF+KAL V +++RK    +TPTV IS  D V+T+KT+TT K+ E+KFKLGEEFEETTADGR V + ++ E  K++  QK  ++  +KS+   RE    + L+       VDD+ C + +KR+
Sbjct:    1 MAKIAGKYKMESSENFDDFMKALGVGLVMRKMGNAATPTVEISLEDDVYTMKTTTTFKTTEVKFKLGEEFEETTADGRNVKSTITLEGNKMIHNQKGDEEKKEKSSVLTREFTETEMLMECK----VDDIVCKRVYKRL 135          
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Match: A0A8K0NXJ2_LADFU (Uncharacterized protein n=2 Tax=Odonata TaxID=6961 RepID=A0A8K0NXJ2_LADFU)

HSP 1 Score: 107 bits (266), Expect = 8.950e-27
Identity = 59/136 (43.38%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKDGQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFK 408
            MD    KF+  S+E +++++KAL V ++ RK     TPTV ++E DGV+TIKT++T K+ E+ FKLGEEF+E T DGR+V +VV+ +  K++ +QK    G+K T  IRE +G DE+   +    VDD+ C + +K
Sbjct:   33 MDFLNKKFKMVSSENFDEYMKALGVGLVTRKMGNAVTPTVEVTEKDGVFTIKTTSTFKNSEINFKLGEEFDEETVDGRKVKSVVTKDGNKLIHLQK----GEKETTIIREFSG-DEMKAILK---VDDIVCTRVYK 160          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101542.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2UEZ0_ACAPC2.120e-6375.36Cellular retinoic acid-binding protein 2 n=3 Tax=A... [more]
UPI000C788E8B4.410e-6375.36fatty acid-binding protein-like n=1 Tax=Eurytemora... [more]
A0A0U2TK48_9MAXI8.890e-6373.19Cellular retinoic acid-binding protein 2 n=4 Tax=P... [more]
A0A553P9U0_TIGCA1.250e-4358.09Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
UPI000C78B31A3.080e-3954.74cellular retinoic acid-binding protein 2-like n=1 ... [more]
A7TZ46_LEPSM3.430e-3451.80Cellular retinoic acid binding protein 2 [Jaculus ... [more]
C1BNR5_CALRO1.430e-3350.72Cellular retinoic acid-binding protein 2 n=4 Tax=C... [more]
A0A7R9BUE6_9CRUS7.860e-2842.45Hypothetical protein n=2 Tax=Notodromas monacha Ta... [more]
F1AQ56_PROCL4.360e-2743.17Fatty acid binding protein n=2 Tax=Procambarus cla... [more]
A0A8K0NXJ2_LADFU8.950e-2743.38Uncharacterized protein n=2 Tax=Odonata TaxID=6961... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101542contigEcto-sp8_S_contig101542:61..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeNematoda
Stop1
Start1
Seed ortholog score109.0
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog6334.EFV61239
Model size417
KEGG koko:K08753
KEGG Pathwayko03320,ko04923,map03320,map04923
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family
EggNOG OGs3A4HC@33154,3BTCU@33208,3D6FA@33213,40EE2@6231,KOG4015@1,KOG4015@2759
Cds size417
COG Functional cat.I
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.0553563-CDS-Ecto-sp8_S_contig101542:60..4771681143113.0553563-CDS-Ecto-sp8_S_contig101542:60..477Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101542 61..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101542.251.1prot_Ecto-sp8_S_contig101542.251.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101542 61..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101542.251.1

>prot_Ecto-sp8_S_contig101542.251.1 ID=prot_Ecto-sp8_S_contig101542.251.1|Name=mRNA_Ecto-sp8_S_contig101542.251.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=139bp
MDAFKGKFERTSAEKYEDFLKALDVNMLLRKAATVSTPTVVISENDGVWT
IKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVSFEDGKIVTVQKAKKD
GQKSTKSIREMNGADELVYTMTIDGVDDLTCVQKFKRV*
back to top

mRNA from alignment at Ecto-sp8_S_contig101542:61..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101542.251.1 ID=mRNA_Ecto-sp8_S_contig101542.251.1|Name=mRNA_Ecto-sp8_S_contig101542.251.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101542:61..477+ (Ectocarpus species8 EcLAC_412)
ATGGACGCATTCAAGGGTAAGTTCGAGCGAACCTCCGCTGAGAAGTACGA AGACTTCCTGAAGGCCTTGGACGTGAACATGCTGCTGAGGAAGGCCGCCA CTGTGTCCACCCCCACTGTAGTTATCTCTGAAAATGATGGTGTTTGGACA ATCAAGACCTCTACCACCTTAAAGTCCATGGAGCTCAAGTTCAAGCTTGG TGAAGAGTTTGAGGAGACTACGGCTGATGGTCGCCAAGTGTCCGCTGTTG TTTCGTTTGAGGATGGAAAGATCGTCACCGTACAGAAGGCCAAGAAGGAC GGACAGAAGAGCACCAAGTCCATCCGTGAGATGAACGGCGCGGATGAGCT GGTGTACACCATGACCATTGATGGTGTGGATGACCTGACTTGCGTCCAGA AGTTTAAGAGGGTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101542:61..477+

>mRNA_Ecto-sp8_S_contig101542.251.1 ID=mRNA_Ecto-sp8_S_contig101542.251.1|Name=mRNA_Ecto-sp8_S_contig101542.251.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101542:61..477+ (Ectocarpus species8 EcLAC_412)
ATGGACGCATTCAAGGGTAAGTTCGAGCGAACCTCCGCTGAGAAGTACGA
AGACTTCCTGAAGGCCTTGGACGTGAACATGCTGCTGAGGAAGGCCGCCA
CTGTGTCCACCCCCACTGTAGTTATCTCTGAAAATGATGGTGTTTGGACA
ATCAAGACCTCTACCACCTTAAAGTCCATGGAGCTCAAGTTCAAGCTTGG
TGAAGAGTTTGAGGAGACTACGGCTGATGGTCGCCAAGTGTCCGCTGTTG
TTTCGTTTGAGGATGGAAAGATCGTCACCGTACAGAAGGCCAAGAAGGAC
GGACAGAAGAGCACCAAGTCCATCCGTGAGATGAACGGCGCGGATGAGCT
GGTGTACACCATGACCATTGATGGTGTGGATGACCTGACTTGCGTCCAGA
AGTTTAAGAGGGTGTAA
back to top