mRNA_Ecto-sp8_S_contig10154.250.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10154.250.1
Unique NamemRNA_Ecto-sp8_S_contig10154.250.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 9.680e-44
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
Query:    1 QASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            QASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE+
Sbjct:  101 QASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEI 186          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.250e-30
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 1
Query:   10 QRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            + KLGT+KGVF PC QNILGVI+FIRLP+I GQAG+++T++I+ ++KL T LTTLSM+AIATNG VQAGGPY+IISRNLGVE+
Sbjct:   90 ESKLGTMKGVFLPCFQNILGVIVFIRLPYITGQAGIWMTMLILFLSKLTTVLTTLSMSAIATNGTVQAGGPYFIISRNLGVEL 172          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A7S1BPY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPY8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.200e-28
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 1
Query:   10 QRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            +RKLGTV GVF PC+QNILGVILFIRLPFI GQAG FL  +++++   AT  T+LS++A+ TNG +QAGGPYYIISRNLGVE+
Sbjct:   96 ERKLGTVNGVFLPCLQNILGVILFIRLPFITGQAGCFLASLMLVICFTATFTTSLSLSALVTNGSIQAGGPYYIISRNLGVEI 178          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.300e-27
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    7 SQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            S  KLGT+ GVF PC+QNILGVILFIRLPFI  QAG   T +IIL+   +T LT LS++AIATNG +QAGGPYY+ISRNLGVE+
Sbjct:  141 STAKLGTLTGVFLPCLQNILGVILFIRLPFITSQAGCIQTTLIILMCVTSTFLTALSLSAIATNGTIQAGGPYYVISRNLGVEI 224          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A7S3Z721_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z721_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 3.160e-25
Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 QASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            +++ +K GT  GVF  C+ NI GVI+F+RLP+ VGQAG+ LTIVII ++ + TT+TTLSM+AI TNG+V+AGG YY+ISR+LG  V
Sbjct:   81 ESTGKKFGTWNGVFVSCLLNIFGVIMFLRLPWTVGQAGIGLTIVIIFISNVVTTITTLSMSAICTNGEVRAGGAYYLISRSLGPRV 166          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.750e-25
Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query:   16 KLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE 255
            KL T+KGV+ PC+QNILGVILF+RLPFI  QAG  LT +I+ +  ++T LT LS++A+ATNG+++ GGPYYI+SRNLGVE
Sbjct:   79 KLDTLKGVYLPCLQNILGVILFLRLPFITAQAGTILTSLIVTLCTISTFLTALSLSAVATNGKIREGGPYYIVSRNLGVE 158          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A2R5GRV7_9STRA (Solute carrier family 12 member 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRV7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.070e-24
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    4 ASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE 255
            A+ ++ GT+ GV+ PC+QNILGVILFIRLP+IVGQAG  LT VII++  LAT LTTLSM+A+ATNG+V AGGPY I+ +NLG E
Sbjct:  142 AAPKRFGTLFGVYLPCLQNILGVILFIRLPWIVGQAGTVLTTVIIMLCVLATGLTTLSMSALATNGKVGAGGPYGILLQNLGPE 225          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.450e-24
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   13 RKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            +KLGT KGVF PC+QNILG+IL++RL +I GQAG F T  I+L+   +T LT LS++AIATNG+V+AGGPY++ISRNLG EV
Sbjct:  145 QKLGTFKGVFLPCLQNILGIILYLRLTWITGQAGTFGTSGIVLICACSTFLTALSLSAIATNGRVEAGGPYFVISRNLGPEV 226          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: A0A7S2EJL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJL4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.590e-24
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    7 SQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            ++ KLGT+ GVF PC+Q I+GVILF+RL  I  QAGV +T +II+V  ++T LT LS++AIATNG + AGGPYY+ISR LGVE+
Sbjct:   99 AEGKLGTLNGVFLPCLQTIIGVILFLRLTSITAQAGVIMTTMIIIVCVISTLLTALSLSAIATNGTICAGGPYYVISRTLGVEI 182          
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Match: F0YC09_AURAN (AA_permease domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC09_AURAN)

HSP 1 Score: 103 bits (258), Expect = 4.710e-24
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    4 ASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 258
            A + KLGT KGVF PC+QNILGVILF+RL +I GQAG      I+L+   +T LT LS++A+ATNG+V+AGGPY++ISRNLG EV
Sbjct:  152 AGEEKLGTFKGVFLPCLQNILGVILFLRLCWITGQAGALGATGIVLICATSTFLTALSLSAVATNGKVEAGGPYFVISRNLGPEV 236          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10154.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z6_9PHAE9.680e-4498.84Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z2U9_9STRA2.250e-3072.29Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S1BPY8_9STRA4.200e-2868.67Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2K263_9STRA7.300e-2769.05Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S3Z721_9EUKA3.160e-2559.30Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7R9YE43_9STRA7.750e-2563.75Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2R5GRV7_9STRA1.070e-2466.67Solute carrier family 12 member 2 n=1 Tax=Hondaea ... [more]
A0A8J2SMD4_9STRA1.450e-2464.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2EJL4_9STRA1.590e-2460.71Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
F0YC09_AURAN4.710e-2462.35AA_permease domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10154contigEcto-sp8_S_contig10154:6268..6525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.8
Seed ortholog evalue8e-20
Seed eggNOG ortholog227086.JGI_V11_87190
Preferred nameSLC12A1
Model size258
KEGG koko:K10951,ko:K13151,ko:K14425,ko:K14426
KEGG TC2.A.30.1,2.A.30.2,2.A.30.3,2.A.30.4
KEGG Pathwayko03013,ko04970,ko04972,ko05110,map03013,map04970,map04972,map05110
Hectar predicted targeting categorysignal anchor
GOsGO:0001655,GO:0001763,GO:0001822,GO:0002009,GO:0003008,GO:0003014,GO:0003096,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006820,GO:0006821,GO:0006865,GO:0006884,GO:0006950,GO:0006970,GO:0006972,GO:0007275,GO:0007588,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0008361,GO:0008509,GO:0008511,GO:0008514,GO:0008519,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009651,GO:0009653,GO:0009674,GO:0009887,GO:0009888,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015103,GO:0015108,GO:0015171,GO:0015291,GO:0015293,GO:0015294,GO:0015296,GO:0015318,GO:0015370,GO:0015373,GO:0015377,GO:0015378,GO:0015379,GO:0015672,GO:0015696,GO:0015698,GO:0015711,GO:0015849,GO:0016020,GO:0016021,GO:0016043,GO:0016101,GO:0016323,GO:0016324,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022612,GO:0022804,GO:0022857,GO:0022890,GO:0023051,GO:0023056,GO:0030001,GO:0030321,GO:0030879,GO:0031224,GO:0031226,GO:0031982,GO:0032501,GO:0032502,GO:0032535,GO:0032978,GO:0033036,GO:0033554,GO:0034220,GO:0034613,GO:0035239,GO:0035264,GO:0035295,GO:0035725,GO:0040007,GO:0042538,GO:0042592,GO:0043226,GO:0043227,GO:0043230,GO:0044237,GO:0044238,GO:0044255,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045177,GO:0045184,GO:0045795,GO:0046873,GO:0046942,GO:0046943,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048729,GO:0048731,GO:0048732,GO:0048754,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050848,GO:0050850,GO:0050877,GO:0050896,GO:0050906,GO:0050910,GO:0050954,GO:0050974,GO:0050982,GO:0051179,GO:0051205,GO:0051234,GO:0051606,GO:0051641,GO:0051716,GO:0055085,GO:0060429,GO:0060443,GO:0060444,GO:0060560,GO:0060562,GO:0060603,GO:0060763,GO:0061024,GO:0061138,GO:0061180,GO:0065007,GO:0065008,GO:0070062,GO:0070293,GO:0070294,GO:0070633,GO:0070634,GO:0070727,GO:0070884,GO:0070886,GO:0071214,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071702,GO:0071704,GO:0071705,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0072001,GO:0072488,GO:0072657,GO:0090066,GO:0090150,GO:0098590,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662,GO:0104004,GO:0106056,GO:0106058,GO:1902476,GO:1902531,GO:1902533,GO:1903561,GO:1903825,GO:1905039
Exons1
EggNOG free text desc.cation:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2083@2759
Cds size258
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000,ko03041,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.0266814-CDS-Ecto-sp8_S_contig10154:6267..65251681143113.0266814-CDS-Ecto-sp8_S_contig10154:6267..6525Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10154 6268..6525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10154.250.1prot_Ecto-sp8_S_contig10154.250.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10154 6268..6525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10154.250.1

>prot_Ecto-sp8_S_contig10154.250.1 ID=prot_Ecto-sp8_S_contig10154.250.1|Name=mRNA_Ecto-sp8_S_contig10154.250.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
QASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAK
LATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV
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mRNA from alignment at Ecto-sp8_S_contig10154:6268..6525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10154.250.1 ID=mRNA_Ecto-sp8_S_contig10154.250.1|Name=mRNA_Ecto-sp8_S_contig10154.250.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10154:6268..6525+ (Ectocarpus species8 EcLAC_412)
CAGGCGTCGCAGCGCAAGCTGGGCACGGTGAAGGGGGTGTTCCAGCCTTG CGTCCAGAACATCCTGGGGGTAATCCTCTTCATCCGTCTGCCCTTCATCG TGGGCCAGGCGGGCGTGTTCTTGACCATCGTCATCATCCTCGTGGCCAAG CTGGCGACCACGCTCACCACCCTCTCCATGAACGCCATCGCCACGAACGG GCAGGTGCAGGCCGGGGGCCCGTATTACATCATCTCCAGGAACCTGGGGG TGGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10154:6268..6525+

>mRNA_Ecto-sp8_S_contig10154.250.1 ID=mRNA_Ecto-sp8_S_contig10154.250.1|Name=mRNA_Ecto-sp8_S_contig10154.250.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10154:6268..6525+ (Ectocarpus species8 EcLAC_412)
CAGGCGTCGCAGCGCAAGCTGGGCACGGTGAAGGGGGTGTTCCAGCCTTG
CGTCCAGAACATCCTGGGGGTAATCCTCTTCATCCGTCTGCCCTTCATCG
TGGGCCAGGCGGGCGTGTTCTTGACCATCGTCATCATCCTCGTGGCCAAG
CTGGCGACCACGCTCACCACCCTCTCCATGAACGCCATCGCCACGAACGG
GCAGGTGCAGGCCGGGGGCCCGTATTACATCATCTCCAGGAACCTGGGGG
TGGAGGTG
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