mRNA_Ecto-sp8_S_contig10149.241.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10149.241.1
Unique NamemRNA_Ecto-sp8_S_contig10149.241.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10149.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10149contigEcto-sp8_S_contig10149:1493..2153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size661
Hectar predicted targeting categorysignal peptide
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.3800542-UTR-Ecto-sp8_S_contig10149:1492..15301681143112.3800542-UTR-Ecto-sp8_S_contig10149:1492..1530Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10149 1493..1530 +
1681143112.403188-UTR-Ecto-sp8_S_contig10149:1899..21531681143112.403188-UTR-Ecto-sp8_S_contig10149:1899..2153Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10149 1900..2153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.3932247-CDS-Ecto-sp8_S_contig10149:1530..18991681143112.3932247-CDS-Ecto-sp8_S_contig10149:1530..1899Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10149 1531..1899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10149.241.1prot_Ecto-sp8_S_contig10149.241.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10149 1531..1899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10149.241.1

>prot_Ecto-sp8_S_contig10149.241.1 ID=prot_Ecto-sp8_S_contig10149.241.1|Name=mRNA_Ecto-sp8_S_contig10149.241.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=123bp
MFYVRLLSRRTYQAEVGKQTSFCFQRLAAFVFRLVLFCYAYAYRGCEPSE
PCTPPAKYAHCRYFVRLDWHEKHLVGEGGSAHAFRSVFNSPRLSRFLWLR
VCRTYLLVKFCTHLDTLFLFVA*
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mRNA from alignment at Ecto-sp8_S_contig10149:1493..2153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10149.241.1 ID=mRNA_Ecto-sp8_S_contig10149.241.1|Name=mRNA_Ecto-sp8_S_contig10149.241.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10149:1493..2153+ (Ectocarpus species8 EcLAC_412)
CTGTACGTGAAACACCCTGCTTTTGCTTTTTGTTGGACATGTTTTACGTC
CGGTTGCTATCGCGCAGAACATACCAGGCAGAGGTGGGAAAGCAGACAAG
TTTTTGTTTTCAAAGACTGGCAGCTTTTGTGTTTCGTCTTGTTTTGTTCT
GTTATGCGTATGCGTATAGGGGTTGCGAACCTAGCGAGCCATGTACCCCT
CCGGCTAAATATGCACATTGCCGTTATTTTGTTCGTTTGGACTGGCATGA
AAAACACCTCGTTGGTGAAGGAGGGTCCGCACACGCCTTCAGGTCTGTCT
TTAATAGCCCTCGCTTGTCTCGTTTTTTGTGGCTCCGTGTATGCAGGACC
TACCTCCTTGTGAAGTTTTGCACCCATTTAGATACATTGTTTCTTTTTGT
TGCCTAGAGGCTTCTTGTGCTTCTTCGCCCCTCTGGAGTGCTCGCAGAAC
AAATGAACCCCGGCACAACAAACAGTCGGTTTTCAGCTCGCCGTTTCGGC
TCTCGCTGTCGGCGAGTTTCGAGTCTTTTTCGGGTTTTTCGTTGTGTTTT
TATGAATAAACGGGGAGTGCACAGGATGACACCATCAGCTTGATGGGGCT
GGCTCACTGTCACTTGTGTAACCACCACCACGGCGAGGTGATAAGGCTAA
ATATGCGTTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10149:1493..2153+

>mRNA_Ecto-sp8_S_contig10149.241.1 ID=mRNA_Ecto-sp8_S_contig10149.241.1|Name=mRNA_Ecto-sp8_S_contig10149.241.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10149:1493..2153+ (Ectocarpus species8 EcLAC_412)
ATGTTTTACGTCCGGTTGCTATCGCGCAGAACATACCAGGCAGAGGTGGG
AAAGCAGACAAGTTTTTGTTTTCAAAGACTGGCAGCTTTTGTGTTTCGTC
TTGTTTTGTTCTGTTATGCGTATGCGTATAGGGGTTGCGAACCTAGCGAG
CCATGTACCCCTCCGGCTAAATATGCACATTGCCGTTATTTTGTTCGTTT
GGACTGGCATGAAAAACACCTCGTTGGTGAAGGAGGGTCCGCACACGCCT
TCAGGTCTGTCTTTAATAGCCCTCGCTTGTCTCGTTTTTTGTGGCTCCGT
GTATGCAGGACCTACCTCCTTGTGAAGTTTTGCACCCATTTAGATACATT
GTTTCTTTTTGTTGCCTAG
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