mRNA_Ecto-sp8_S_contig101452.237.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101452.237.1
Unique NamemRNA_Ecto-sp8_S_contig101452.237.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A0A0HED2_9RHOB (Transcriptional regulator, TetR family n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0A0HED2_9RHOB)

HSP 1 Score: 254 bits (649), Expect = 3.160e-84
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
            +LSEEICRPLS+LG+A+ ALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEI MDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSIS VIMPRLLAVDQPVDASEHSKRAVDAFL VYGRRNDL
Sbjct:   78 RLSEEICRPLSNLGNAQDALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEIYMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISDVIMPRLLAVDQPVDASEHSKRAVDAFLAVYGRRNDL 214          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A3W6N6_9RHOB (Transcriptional regulator, TetR family protein n=2 Tax=Roseovarius sp. 217 TaxID=314264 RepID=A3W6N6_9RHOB)

HSP 1 Score: 240 bits (613), Expect = 9.230e-79
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
            +LSEEICRPLS+ GDARG LEELSRRMIGLVMD+ YIRLLRVCIGAV VLPEAGEI MDAGPTRAI HVAQIL+DLHET+SL+VEN+QNAASQFIHLSISGVIMPRLLAVDQPVDA EHSKRAVDAFLGVYG RN L
Sbjct:   77 RLSEEICRPLSNAGDARGVLEELSRRMIGLVMDDDYIRLLRVCIGAVSVLPEAGEIYMDAGPTRAIKHVAQILRDLHETRSLSVENIQNAASQFIHLSISGVIMPRLLAVDQPVDAPEHSKRAVDAFLGVYGWRNGL 213          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A1I7ECY5_9RHOB (Transcriptional regulator, TetR family n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I7ECY5_9RHOB)

HSP 1 Score: 213 bits (541), Expect = 5.080e-68
Identity = 106/134 (79.10%), Postives = 121/134 (90.30%), Query Frame = 1
Query:    4 LSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
            LSEEICRPL+S  DAR  LEELSRRMIGLVMD+ Y+RLLRVCIGAV VLPEAGEI M+AGP RAI  VAQIL++LHETKSL+V+NVQNA++QFIHLS+SGVIMP+LLAVDQP+D SEHS+RAVDAFLG YG R+
Sbjct:   63 LSEEICRPLTSQNDARSMLEELSRRMIGLVMDDDYMRLLRVCIGAVSVLPEAGEIYMNAGPRRAIRIVAQILRNLHETKSLDVKNVQNASAQFIHLSVSGVIMPQLLAVDQPIDVSEHSRRAVDAFLGAYGGRD 196          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A3TZX7_PSEBH (Transcriptional regulator, TetR family protein n=2 Tax=Pseudooceanicola batsensis TaxID=314255 RepID=A3TZX7_PSEBH)

HSP 1 Score: 210 bits (535), Expect = 4.580e-67
Identity = 106/137 (77.37%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
            +LSEEIC+PLSS  DAR  LEELSRRMIGLVMD+ YIRLLR+C+GA  VLPEAGEI MDAGP RA   VAQIL+ LH+ KSLNV++VQ+AASQFIHL+ISGV++PRLLAVD+PVDASEHSKRAVDAFL VY  RNDL
Sbjct:   65 RLSEEICQPLSSRDDARAVLEELSRRMIGLVMDDDYIRLLRICLGAASVLPEAGEIYMDAGPRRATRIVAQILERLHKAKSLNVQDVQSAASQFIHLAISGVVIPRLLAVDEPVDASEHSKRAVDAFLRVYAGRNDL 201          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A1I1N2H7_9RHOB (Transcriptional regulator, TetR family n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1I1N2H7_9RHOB)

HSP 1 Score: 207 bits (526), Expect = 9.710e-66
Identity = 106/136 (77.94%), Postives = 116/136 (85.29%), Query Frame = 1
Query:    4 LSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
            LS EICRPLSS  DAR  LEELS+RMIGLVMD+ YIRLLRVCIGA  VLPEAGEI M +GPTRAI  VAQIL+ LHE KS NV+++Q AASQFIHLSI+GVIMPRLLAVDQPVDASEHSKRA DAFL +Y  RN+L
Sbjct:   63 LSMEICRPLSSQNDARSVLEELSQRMIGLVMDDDYIRLLRVCIGAASVLPEAGEIYMGSGPTRAIRTVAQILERLHEAKSQNVQDIQGAASQFIHLSIAGVIMPRLLAVDQPVDASEHSKRAADAFLRIYAGRNNL 198          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A1T1ZXT2_9RHOB (TetR family transcriptional regulator n=1 Tax=Thioclava sp. F28-4 TaxID=1915315 RepID=A0A1T1ZXT2_9RHOB)

HSP 1 Score: 184 bits (467), Expect = 9.270e-57
Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVY 393
            +LS EI RPLSS  + R  LEELSRRMIGLVMD  YIRLLR CIGAV VLPEAGEI M+AGP RA   V Q+L+ LHE  SL V + Q+AASQFIHLS+SGVIMPR+LAVDQP+DA EHSKRAVDAFL +Y
Sbjct:   62 RLSAEISRPLSSGDEPRVVLEELSRRMIGLVMDNDYIRLLRACIGAVAVLPEAGEIYMEAGPRRATRIVGQVLQGLHEAGSLKVHDAQSAASQFIHLSVSGVIMPRMLAVDQPIDAVEHSKRAVDAFLEIY 192          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: UPI001E3CD266 (TetR/AcrR family transcriptional regulator n=1 Tax=Seohaeicola saemankumensis TaxID=481181 RepID=UPI001E3CD266)

HSP 1 Score: 169 bits (428), Expect = 7.250e-51
Identity = 87/135 (64.44%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
            +LS EI  PLS+  + R  LEELS RMI LV+D+ YIRLLR CIGAV VLPEAGEI M+AGP RA   V Q+L+ LH   SL V +VQ+AA QFIHLS+SG+IMPRLL+VD P+DASE SKRAV+AFL +Y  R+
Sbjct:   62 RLSAEISLPLSNDDEPRAVLEELSGRMIRLVLDDDYIRLLRTCIGAVAVLPEAGEIYMEAGPRRATRIVGQVLQGLHNAGSLKVHDVQSAAGQFIHLSVSGIIMPRLLSVDPPIDASEQSKRAVNAFLEIYSPRH 196          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A0J5Q6D5_9RHOB (Transcriptional regulator, TetR family n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0J5Q6D5_9RHOB)

HSP 1 Score: 165 bits (417), Expect = 3.590e-49
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
            +LS EI RPLSS  D R  LEELSRRMI LVMD+ YIRLLR CIGAV VLPEAG+I M+AGP RA   VA+IL+ + +  SL+V++   AA QFIHLS+SGVIMPRLLA++  +DASEHS +A D FL VY   N
Sbjct:   62 RLSAEISRPLSSREDPRSVLEELSRRMIDLVMDDDYIRLLRSCIGAVSVLPEAGDIYMEAGPKRATGIVARILQGMRDAGSLHVQDCHTAAGQFIHLSLSGVIMPRLLALEPRIDASEHSTKATDTFLDVYSAGN 196          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A073IVZ5_9RHOB (TetR family transcriptional regulator n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A073IVZ5_9RHOB)

HSP 1 Score: 163 bits (412), Expect = 1.940e-48
Identity = 83/135 (61.48%), Postives = 101/135 (74.81%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
            +LS EI RPLS     R  LE+LSRRMI LV+D+ YIRLLR C  AV VLPEAG+I M+AGP RA   V Q+L+ L E  S+ +++VQ+ ASQFIHLSISG+IMPRLLAV QP+DA  H++RAVD FLG+Y   N
Sbjct:   62 RLSVEISRPLSRNDSPRAVLEQLSRRMIRLVLDDDYIRLLRTCTRAVSVLPEAGQIYMEAGPRRATRIVGQVLRVLQEAGSVKMQDVQSTASQFIHLSISGIIMPRLLAVGQPIDAPAHAERAVDVFLGIYSAGN 196          
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A259M841_9RHOB (TetR family transcriptional regulator n=7 Tax=Rhodobacterales TaxID=204455 RepID=A0A259M841_9RHOB)

HSP 1 Score: 163 bits (412), Expect = 2.390e-48
Identity = 83/131 (63.36%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVY 393
            +LS  I RPL    D R  LEELSRR+I LV+D+ YIRLLR CIGAV VLPEAGEI M AGP  A  HV Q+L  LH+ K+LNVE+  +AA Q IHLS+SGVIMPRLL +D  +D S+H+KRAVDAFL +Y
Sbjct:   65 RLSAAISRPLPKDLDPRAILEELSRRLINLVLDDDYIRLLRACIGAVSVLPEAGEIYMKAGPKLATRHVGQVLHALHDAKALNVEDHLSAAGQLIHLSVSGVIMPRLLTLDPKIDVSDHAKRAVDAFLKIY 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0HED2_9RHOB3.160e-8494.16Transcriptional regulator, TetR family n=9 Tax=Alp... [more]
A3W6N6_9RHOB9.230e-7988.32Transcriptional regulator, TetR family protein n=2... [more]
A0A1I7ECY5_9RHOB5.080e-6879.10Transcriptional regulator, TetR family n=3 Tax=Rho... [more]
A3TZX7_PSEBH4.580e-6777.37Transcriptional regulator, TetR family protein n=2... [more]
A0A1I1N2H7_9RHOB9.710e-6677.94Transcriptional regulator, TetR family n=3 Tax=Alp... [more]
A0A1T1ZXT2_9RHOB9.270e-5772.52TetR family transcriptional regulator n=1 Tax=Thio... [more]
UPI001E3CD2667.250e-5164.44TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A0J5Q6D5_9RHOB3.590e-4963.70Transcriptional regulator, TetR family n=2 Tax=Alp... [more]
A0A073IVZ5_9RHOB1.940e-4861.48TetR family transcriptional regulator n=2 Tax=Rhod... [more]
A0A259M841_9RHOB2.390e-4863.36TetR family transcriptional regulator n=7 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101452contigEcto-sp8_S_contig101452:126..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score251.9
Seed ortholog evalue1.7e-64
Seed eggNOG ortholog1288298.rosmuc_03951
Model size414
KEGG koko:K18301
KEGG ModuleM00642
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Transcriptional regulator, TetR family
EggNOG OGs1MZ9E@1224,2UF85@28211,46QEA@74030,COG1309@1,COG1309@2
Cds size414
COG Functional cat.K
Best tax levelRoseovarius
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01504,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.123547-CDS-Ecto-sp8_S_contig101452:125..5391681143112.123547-CDS-Ecto-sp8_S_contig101452:125..539Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101452 126..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101452.237.1prot_Ecto-sp8_S_contig101452.237.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101452 126..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101452.237.1

>prot_Ecto-sp8_S_contig101452.237.1 ID=prot_Ecto-sp8_S_contig101452.237.1|Name=mRNA_Ecto-sp8_S_contig101452.237.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=138bp
KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVL
PEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSIS
GVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL*
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mRNA from alignment at Ecto-sp8_S_contig101452:126..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101452.237.1 ID=mRNA_Ecto-sp8_S_contig101452.237.1|Name=mRNA_Ecto-sp8_S_contig101452.237.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101452:126..539- (Ectocarpus species8 EcLAC_412)
AAACTTTCAGAAGAAATCTGTCGTCCGCTTTCAAGCTTGGGCGATGCACG AGGTGCCCTTGAAGAACTCTCGCGGCGCATGATCGGGCTGGTCATGGATG AGGGTTACATTCGTCTCCTTCGCGTTTGCATCGGCGCGGTTCCGGTTCTG CCGGAGGCAGGCGAAATATGCATGGATGCAGGCCCGACGCGCGCCATCAC ACACGTCGCGCAAATACTCAAAGACTTGCACGAAACGAAATCACTGAACG TTGAAAACGTTCAAAACGCCGCCAGTCAGTTCATTCACCTGTCCATCTCC GGCGTCATCATGCCGCGATTGCTGGCCGTCGACCAGCCCGTCGATGCATC TGAGCATTCAAAGAGGGCGGTTGACGCTTTTCTGGGGGTATATGGCCGAC GCAATGACTTATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101452:126..539-

>mRNA_Ecto-sp8_S_contig101452.237.1 ID=mRNA_Ecto-sp8_S_contig101452.237.1|Name=mRNA_Ecto-sp8_S_contig101452.237.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101452:126..539- (Ectocarpus species8 EcLAC_412)
AAACTTTCAGAAGAAATCTGTCGTCCGCTTTCAAGCTTGGGCGATGCACG
AGGTGCCCTTGAAGAACTCTCGCGGCGCATGATCGGGCTGGTCATGGATG
AGGGTTACATTCGTCTCCTTCGCGTTTGCATCGGCGCGGTTCCGGTTCTG
CCGGAGGCAGGCGAAATATGCATGGATGCAGGCCCGACGCGCGCCATCAC
ACACGTCGCGCAAATACTCAAAGACTTGCACGAAACGAAATCACTGAACG
TTGAAAACGTTCAAAACGCCGCCAGTCAGTTCATTCACCTGTCCATCTCC
GGCGTCATCATGCCGCGATTGCTGGCCGTCGACCAGCCCGTCGATGCATC
TGAGCATTCAAAGAGGGCGGTTGACGCTTTTCTGGGGGTATATGGCCGAC
GCAATGACTTATAG
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