mRNA_Ecto-sp8_S_contig101447.236.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101447.236.1
Unique NamemRNA_Ecto-sp8_S_contig101447.236.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.940e-36
Identity = 75/96 (78.12%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 MDLGDMFISLAYVDRQIERDREEQAAAEEEWW-----------DSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            MDLGDMFISLAYVDRQI+RDREE                    DSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL
Sbjct:  190 MDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXXXXXXDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 285          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.850e-26
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 MDLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            MDLG+M +SLAYVDR I++D+ EQ    +E  + +RGVSGAMSRVF VQER  +L +HGL+HL+GYDHET+ DY+ MVA EEE+L
Sbjct:  138 MDLGEMMVSLAYVDRVIQQDKAEQDGQSQEE-EHDRGVSGAMSRVFTVQERLPLLCIHGLLHLVGYDHETDEDYEVMVAREEELL 221          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.380e-21
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 DLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            DLGDM +S+ YV RQ +RD+ +     E  W  ERG SGAM+RVF VQ+R   L++HG++HLLG+DHET+ DY  MV  E+ VL
Sbjct:  300 DLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVL 383          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A4D9DAX9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.940e-21
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 DLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            DLGDM +S+ YV RQ +RD+ +     E  W  ERG SGAM+RVF VQ+R   L++HG++HLLG+DHET+ +Y  MV  E+ VL
Sbjct:  164 DLGDMIVSVPYVQRQCQRDQVDWFEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKEYNEMVKEEDRVL 247          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A1Z5K9I9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9I9_FISSO)

HSP 1 Score: 87.8 bits (216), Expect = 2.010e-19
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    7 LGDMFISLAYVDRQIERDREEQAAAEEEWWDS---ERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            LGD+ + + YV R+ + D+E     +E        ERGVSGAM+R++D +ER  MLLVHG++HL+GYDHE + DY+ MVA EEE+L
Sbjct:  139 LGDLLVDVPYVMRRCQEDKEYYEQLDESXXXXXXXERGVSGAMARIYDAEERIHMLLVHGMLHLVGYDHEDDDDYELMVAKEEEIL 224          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A7S1ZIF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIF3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.740e-19
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 LGDMFISLAYVDRQIERDREE-QAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            LG+M + + Y++R+IE DRE  +           RGVSGAM++V+DV+ER  ML VHG++HL+GYDHET+ D++ MV  EEEVL
Sbjct:  202 LGEMIVDVPYIERRIEEDREYYEXXXXXXXXXXXRGVSGAMAKVYDVEERIGMLFVHGMLHLVGYDHETDEDFELMVTKEEEVL 285          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A1Z5JES7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JES7_FISSO)

HSP 1 Score: 84.7 bits (208), Expect = 3.180e-18
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    7 LGDMFISLAYVDRQIERDREEQAAAEEEWWDS---ERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            LGD+ + + YV R+ + D+E     +         ERGVSGAM+R++D +ER  MLL+HG++HL+GYDHE + DY+ MVA EEE+L
Sbjct:  141 LGDLLVDVPYVMRRCQEDKEYYEQLDXXXXXXXXXERGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEIL 226          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A0G4EXT6_VITBC (ACPS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EXT6_VITBC)

HSP 1 Score: 84.7 bits (208), Expect = 2.490e-17
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 MDLGDMFISLAYVDRQIERDREEQAAAEE---EWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            +DLGD+FIS  YV  + + DR E  A  E   E+  +ERGVSGAM++ F V+ER  +L++HG++HLLGYD +++SD+  MV  EE+V+
Sbjct:  230 LDLGDIFISAEYVQERCDEDRAEMEAQLEDNGEFVSTERGVSGAMAKTFTVRERLPLLVIHGILHLLGYDDQSDSDWSMMVNREEQVI 317          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A7S1GRK6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRK6_CYCTE)

HSP 1 Score: 79.3 bits (194), Expect = 4.790e-17
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    7 LGDMFISLAYVDRQIERDREEQAAAEEEWW---DSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            LGDM + + YV R+ + D        EEW    D +RGVSGAM   FD ++R  MLLVHG++HL+GYDH  + DY+ MVA E+E+L
Sbjct:   46 LGDMMVDVPYVIRRCKED--------EEWEYEDDDDRGVSGAMVEEFDPEKRLHMLLVHGMLHLVGYDHIDDEDYEVMVAKEDEIL 123          
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: F0XVF3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF3_AURAN)

HSP 1 Score: 78.2 bits (191), Expect = 6.740e-16
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 MDLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
            ++LGDM +S+ YV R+ E+D     A         RGV+ AM+ V DV+ER  MLLVHGL HLL YDHET+ +++ MVA+E+E+L
Sbjct:  125 LNLGDMVVSVPYVRRRAEKDGGRDHAPG-------RGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELL 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG5_ECTSI1.940e-3678.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8A0_9STRA3.850e-2662.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7UC15_9STRA1.380e-2153.57Rrna maturation factor n=1 Tax=Nannochloropsis gad... [more]
A0A4D9DAX9_9STRA2.940e-2152.38Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5K9I9_FISSO2.010e-1950.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S1ZIF3_9STRA3.740e-1951.19Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JES7_FISSO3.180e-1847.67Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A0G4EXT6_VITBC2.490e-1748.86ACPS domain-containing protein n=1 Tax=Vitrella br... [more]
A0A7S1GRK6_CYCTE4.790e-1748.84Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
F0XVF3_AURAN6.740e-1649.41Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101447contigEcto-sp8_S_contig101447:12..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score133.7
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D7FZG5
Preferred nameYBEY
Model size255
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons3
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGs2R6QZ@2759,COG0319@1
Cds size255
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.0752769-CDS-Ecto-sp8_S_contig101447:11..1191681143112.0752769-CDS-Ecto-sp8_S_contig101447:11..119Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101447 12..119 -
1681143112.0863078-CDS-Ecto-sp8_S_contig101447:305..3711681143112.0863078-CDS-Ecto-sp8_S_contig101447:305..371Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101447 306..371 -
1681143112.097754-CDS-Ecto-sp8_S_contig101447:407..4881681143112.097754-CDS-Ecto-sp8_S_contig101447:407..488Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101447 408..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101447.236.1prot_Ecto-sp8_S_contig101447.236.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101447 12..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101447.236.1

>prot_Ecto-sp8_S_contig101447.236.1 ID=prot_Ecto-sp8_S_contig101447.236.1|Name=mRNA_Ecto-sp8_S_contig101447.236.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=85bp
MDLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQE
RASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL
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mRNA from alignment at Ecto-sp8_S_contig101447:12..488-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101447.236.1 ID=mRNA_Ecto-sp8_S_contig101447.236.1|Name=mRNA_Ecto-sp8_S_contig101447.236.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101447:12..488- (Ectocarpus species8 EcLAC_412)
ATGGACCTCGGGGATATGTTCATCTCCCTGGCTTACGTGGACCGACAGAT CGAGAGGGACAGAGAGGAACAGGCGGCGGCAGTGGCGGCGGCGGCGGCGG AGGGGGCGGGGGGGCAGGAAGAAGAGTGGTGGGACAGCGAGAGGGGCGTA AGCGGTGCAATGTCGAGAGTTTTCGATGTCCAGGTAGGAATGGCGCCGCG CGGGCGGTACTCATGTTGTGCATGCCTTAGCTGTTGTTAGGCCATTGACC ACGCGTCCTCAAGAGAGGAGGACGGAGAATTGTCCCCAAAGGACCGAGGC CAATCGCTCCGCTCCCCCCCCCCCCCCCCGATATTTCTTCTTCTCCTCCC GGAAAAACAATAACAATAGGAGCGAGCGTCCATGCTCCTGGTGCACGGCT TGATCCACCTGCTGGGCTACGACCACGAGACGGAGTCGGACTACAAGGCC ATGGTCGCGGTGGAGGAAGAGGTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101447:12..488-

>mRNA_Ecto-sp8_S_contig101447.236.1 ID=mRNA_Ecto-sp8_S_contig101447.236.1|Name=mRNA_Ecto-sp8_S_contig101447.236.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101447:12..488- (Ectocarpus species8 EcLAC_412)
ATGGACCTCGGGGATATGTTCATCTCCCTGGCTTACGTGGACCGACAGAT
CGAGAGGGACAGAGAGGAACAGGCGGCGGCAGAAGAAGAGTGGTGGGACA
GCGAGAGGGGCGTAAGCGGTGCAATGTCGAGAGTTTTCGATGTCCAGGAG
CGAGCGTCCATGCTCCTGGTGCACGGCTTGATCCACCTGCTGGGCTACGA
CCACGAGACGGAGTCGGACTACAAGGCCATGGTCGCGGTGGAGGAAGAGG
TCTTG
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