mRNA_Ecto-sp8_S_contig101447.236.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI) HSP 1 Score: 133 bits (334), Expect = 1.940e-36 Identity = 75/96 (78.12%), Postives = 76/96 (79.17%), Query Frame = 1
Query: 1 MDLGDMFISLAYVDRQIERDREEQAAAEEEWW-----------DSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
MDLGDMFISLAYVDRQI+RDREE DSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL
Sbjct: 190 MDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXXXXXXDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 285
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.850e-26 Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query: 1 MDLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
MDLG+M +SLAYVDR I++D+ EQ +E + +RGVSGAMSRVF VQER +L +HGL+HL+GYDHET+ DY+ MVA EEE+L
Sbjct: 138 MDLGEMMVSLAYVDRVIQQDKAEQDGQSQEE-EHDRGVSGAMSRVFTVQERLPLLCIHGLLHLVGYDHETDEDYEVMVAREEELL 221
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.380e-21 Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 4 DLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
DLGDM +S+ YV RQ +RD+ + E W ERG SGAM+RVF VQ+R L++HG++HLLG+DHET+ DY MV E+ VL
Sbjct: 300 DLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVL 383
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A4D9DAX9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX9_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.940e-21 Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 4 DLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
DLGDM +S+ YV RQ +RD+ + E W ERG SGAM+RVF VQ+R L++HG++HLLG+DHET+ +Y MV E+ VL
Sbjct: 164 DLGDMIVSVPYVQRQCQRDQVDWFEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKEYNEMVKEEDRVL 247
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A1Z5K9I9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9I9_FISSO) HSP 1 Score: 87.8 bits (216), Expect = 2.010e-19 Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 7 LGDMFISLAYVDRQIERDREEQAAAEEEWWDS---ERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
LGD+ + + YV R+ + D+E +E ERGVSGAM+R++D +ER MLLVHG++HL+GYDHE + DY+ MVA EEE+L
Sbjct: 139 LGDLLVDVPYVMRRCQEDKEYYEQLDESXXXXXXXERGVSGAMARIYDAEERIHMLLVHGMLHLVGYDHEDDDDYELMVAKEEEIL 224
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A7S1ZIF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIF3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.740e-19 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 7 LGDMFISLAYVDRQIERDREE-QAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
LG+M + + Y++R+IE DRE + RGVSGAM++V+DV+ER ML VHG++HL+GYDHET+ D++ MV EEEVL
Sbjct: 202 LGEMIVDVPYIERRIEEDREYYEXXXXXXXXXXXRGVSGAMAKVYDVEERIGMLFVHGMLHLVGYDHETDEDFELMVTKEEEVL 285
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A1Z5JES7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JES7_FISSO) HSP 1 Score: 84.7 bits (208), Expect = 3.180e-18 Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 7 LGDMFISLAYVDRQIERDREEQAAAEEEWWDS---ERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
LGD+ + + YV R+ + D+E + ERGVSGAM+R++D +ER MLL+HG++HL+GYDHE + DY+ MVA EEE+L
Sbjct: 141 LGDLLVDVPYVMRRCQEDKEYYEQLDXXXXXXXXXERGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEIL 226
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A0G4EXT6_VITBC (ACPS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EXT6_VITBC) HSP 1 Score: 84.7 bits (208), Expect = 2.490e-17 Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 1 MDLGDMFISLAYVDRQIERDREEQAAAEE---EWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
+DLGD+FIS YV + + DR E A E E+ +ERGVSGAM++ F V+ER +L++HG++HLLGYD +++SD+ MV EE+V+
Sbjct: 230 LDLGDIFISAEYVQERCDEDRAEMEAQLEDNGEFVSTERGVSGAMAKTFTVRERLPLLVIHGILHLLGYDDQSDSDWSMMVNREEQVI 317
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: A0A7S1GRK6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRK6_CYCTE) HSP 1 Score: 79.3 bits (194), Expect = 4.790e-17 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 7 LGDMFISLAYVDRQIERDREEQAAAEEEWW---DSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
LGDM + + YV R+ + D EEW D +RGVSGAM FD ++R MLLVHG++HL+GYDH + DY+ MVA E+E+L
Sbjct: 46 LGDMMVDVPYVIRRCKED--------EEWEYEDDDDRGVSGAMVEEFDPEKRLHMLLVHGMLHLVGYDHIDDEDYEVMVAKEDEIL 123
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Match: F0XVF3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF3_AURAN) HSP 1 Score: 78.2 bits (191), Expect = 6.740e-16 Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 MDLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 255
++LGDM +S+ YV R+ E+D A RGV+ AM+ V DV+ER MLLVHGL HLL YDHET+ +++ MVA+E+E+L
Sbjct: 125 LNLGDMVVSVPYVRRRAEKDGGRDHAPG-------RGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELL 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101447.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101447.236.1 >prot_Ecto-sp8_S_contig101447.236.1 ID=prot_Ecto-sp8_S_contig101447.236.1|Name=mRNA_Ecto-sp8_S_contig101447.236.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=85bp MDLGDMFISLAYVDRQIERDREEQAAAEEEWWDSERGVSGAMSRVFDVQEback to top mRNA from alignment at Ecto-sp8_S_contig101447:12..488- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101447.236.1 ID=mRNA_Ecto-sp8_S_contig101447.236.1|Name=mRNA_Ecto-sp8_S_contig101447.236.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101447:12..488- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101447:12..488- >mRNA_Ecto-sp8_S_contig101447.236.1 ID=mRNA_Ecto-sp8_S_contig101447.236.1|Name=mRNA_Ecto-sp8_S_contig101447.236.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101447:12..488- (Ectocarpus species8 EcLAC_412)back to top |