mRNA_Ecto-sp8_S_contig10014.33.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10014.33.1 vs. uniprot
Match: A0A6H5KVJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ4_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.510e-47 Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 1 Query: 1 MPSRGHQQILPKSSSRSRKGRGHRRSRSVESGSSTGSKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNVPPKLTIDAADFAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGAGDQAVSP 528 MPSRGHQQILPKSSSRSRKGRGHRRSRSVES SSTGSKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DNVPPKLTIDA D+AVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVG GDQA SP Sbjct: 26 MPSRGHQQILPKSSSRSRKGRGHRRSRSVESASSTGSKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DNVPPKLTIDAGDYAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGGGDQARSP 198
BLAST of mRNA_Ecto-sp8_S_contig10014.33.1 vs. uniprot
Match: D7G5H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H2_ECTSI) HSP 1 Score: 171 bits (434), Expect = 8.190e-45 Identity = 165/173 (95.38%), Postives = 165/173 (95.38%), Query Frame = 1 Query: 1 MPSRGHQQILPKSSSRSRKGRGHRRSRSVESGSSTGSKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNVPPKLTIDAADFAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGAGDQA 519 MPSRGHQQILPKSSSRSRKGRGHRRSRSVESG STGSKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D VPPKLTIDA DFAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVG GDQA Sbjct: 272 MPSRGHQQILPKSSSRSRKGRGHRRSRSVESGGSTGSKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DTVPPKLTIDAGDFAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGGGDQA 440 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10014.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10014.33.1 >prot_Ecto-sp8_S_contig10014.33.1 ID=prot_Ecto-sp8_S_contig10014.33.1|Name=mRNA_Ecto-sp8_S_contig10014.33.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=218bp MPSRGHQQILPKSSSRSRKGRGHRRSRSVESGSSTGSKPSPVVITTVHGRback to top mRNA from alignment at Ecto-sp8_S_contig10014:3362..4283+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10014.33.1 ID=mRNA_Ecto-sp8_S_contig10014.33.1|Name=mRNA_Ecto-sp8_S_contig10014.33.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=922bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10014:3362..4283+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10014:3362..4283+ >mRNA_Ecto-sp8_S_contig10014.33.1 ID=mRNA_Ecto-sp8_S_contig10014.33.1|Name=mRNA_Ecto-sp8_S_contig10014.33.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10014:3362..4283+ (Ectocarpus species8 EcLAC_412)back to top |