Homology
BLAST of mRNA_Ecto-sp8_S_contig10010.29.1 vs. uniprot
Match: A0A6H5LM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM15_9PHAE) HSP 1 Score: 449 bits (1155), Expect = 7.820e-153 Identity = 249/319 (78.06%), Postives = 256/319 (80.25%), Query Frame = 1 Query: 7 QPRETTERKGGGYSWAEDDDHARVLLALHLELLAYGLNVHG-GDSPAVRMEQSSAGAFPPMRYVDGGGGCRVITIHALAMFDDLIVSGTAVATGGRDGGKDS-SGDAVHRRTTFSVSEWSPQLLLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SPSGGARSGEQCPTATKHPHLPERQVPPPGDGDNDGGETDKGTGESTSLQXXXXXQRRP--------SLAGGKQEAFRSRVVSGLLLHLCPPPGHFADLLGCGDELLRHVLGMLGARDLATVGLTGRAAAVSVAADCLWAELVAADFSEREQHAVLFLQP 930
+PR TTERKGGGYSWAEDDDHARVLLALHLELLAYGLNVH GDSPAVRMEQS+AGAFPPMRYVDGGGG RVITIHALAMFDDLIVSGTAVATGGRDGG+DS GDAVHRRTTFSVSEWSPQLLLSS S SGG +SG+QCPTATKHPHLPERQ PPGDGDNDG ET KGT ES+ XXXXX SL GG QEAFRSRVVSGLLLHLCPPPGHFADLLGCGDELLRHVLGMLGARDLA VGLTGRAAAVSVAADCLWA+LVAADFSEREQHAVLFLQP
Sbjct: 2 EPRGTTERKGGGYSWAEDDDHARVLLALHLELLAYGLNVHHRGDSPAVRMEQSNAGAFPPMRYVDGGGGGRVITIHALAMFDDLIVSGTAVATGGRDGGRDSRGGDAVHRRTTFSVSEWSPQLLLSSTSRDQQQQSGGVPKGQPQQQVQLKEGQQNAEGSSSGGTQSGDQCPTATKHPHLPERQASPPGDGDNDGRETGKGTLESSXXXXXXXXXXXXXXXXXXXXSLVGGGQEAFRSRVVSGLLLHLCPPPGHFADLLGCGDELLRHVLGMLGARDLAMVGLTGRAAAVSVAADCLWAKLVAADFSEREQHAVLFLQP 320
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 1 |
Model size | 1088 |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Cds size | 1086 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681143097.9922297-CDS-Ecto-sp8_S_contig10010:217..481 | 1681143097.9922297-CDS-Ecto-sp8_S_contig10010:217..481 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10010 218..481 - |
1681143098.0028906-CDS-Ecto-sp8_S_contig10010:1066..1426 | 1681143098.0028906-CDS-Ecto-sp8_S_contig10010:1066..1426 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10010 1067..1426 - |
1681143098.01693-CDS-Ecto-sp8_S_contig10010:3380..3842 | 1681143098.01693-CDS-Ecto-sp8_S_contig10010:3380..3842 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10010 3381..3842 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10010.29.1 >prot_Ecto-sp8_S_contig10010.29.1 ID=prot_Ecto-sp8_S_contig10010.29.1|Name=mRNA_Ecto-sp8_S_contig10010.29.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=362bp
MNQPRETTERKGGGYSWAEDDDHARVLLALHLELLAYGLNVHGGDSPAVR MEQSSAGAFPPMRYVDGGGGCRVITIHALAMFDDLIVSGTAVATGGRDGG KDSSGDAVHRRTTFSVSEWSPQLLLSSTSRDQQQQSGGAAKGQPQQEQLK EGQQNEEESPSGGARSGEQCPTATKHPHLPERQVPPPGDGDNDGGETDKG TGESTSLQQQQRRQRRPSLAGGKQEAFRSRVVSGLLLHLCPPPGHFADLL GCGDELLRHVLGMLGARDLATVGLTGRAAAVSVAADCLWAELVAADFSER EQHAVLFLQPPPPRSPSRSPSLDAAENATAAAAASEGDCRCGGDAGCGGE SPAAAGGLAAEA back to topmRNA from alignment at Ecto-sp8_S_contig10010:218..3842- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig10010.29.1 ID=mRNA_Ecto-sp8_S_contig10010.29.1|Name=mRNA_Ecto-sp8_S_contig10010.29.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3625bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10010:218..3842- (Ectocarpus species8 EcLAC_412) ATGAATCAACCCAGAGAAACGACGGAGAGAAAGGGAGGAGGGTATAGCTG
GGCAGAAGATGACGACCACGCTCGTGTGCTGCTTGCACTCCACCTAGAGC
TGTTAGCCTACGGATTGAATGTTCACGGGGGTGATTCGCCCGCCGTGCGC
ATGGAGCAGAGCAGCGCGGGGGCTTTCCCGCCCATGCGCTACGTCGACGG
CGGTGGCGGTTGTCGGGTGATAACCATCCATGCTTTGGCGATGTTCGACG
ACCTCATCGTGAGCGGGACTGCAGTGGCCACAGGAGGAAGAGATGGAGGA
AAAGATAGTAGTGGCGACGCCGTTCATCGGAGAACAACGTTCAGCGTTTC
CGAGTGGTCTCCACAGCTGCTGCTGTCATCAACCTCAAGGGATCAGCAGC
AGCAGTCTGGGGGGGCTGCTAAGGGCCAGCCTCAGCAGGAGCAGCTCAAG
GAGGGACAGCAGGTGAAGACACTCTGCTGAAATACTAGCGTCGTTTTGGA
CCAGAGAGCCAGCTTTCCCAGCTTAGTTTGCTGAACCCCCAACAAACAGC
CAACGAGCTCTGCAGATCATCGGGGATCGTGTGTAAAATGGTTGCCACGC
TCTGCTCTCCTTGTGACCCTCTCTTGTTGTAACGTCCGTTCAGCGGACCA
CCAGCACGACACACCATTGGTATATATTTATGCTCAAGTTAGAGCGTTAG
AGATCTCTACATACGCGAGGATAGCTTCACCCACGTGCGTGCGGAAGCAA
GCGCCTATCGCACGGCAAAGCTGGGGCGATTACAAGTTGCCCCGCAGGCT
AGACTGTACTGGTGTGGGTGTGCCTTTGCAAGCTATGAGTCGAGACTACA
GCAGTAGACTGATGTATTCTATAAGCACAGGTAGGTGCGTGCTTGCTTCA
TCTGCTCTACAGCAGCAGTGATTGTTTTTTTAAAACGCCTTCCGCGATTC
AATCACGTTGTCACAATGTAGGAGGAACTCTCTGTTTGGTGATACCTTGC
GTTGGGGCTGCTGGTGGTGGCACAGAGGGTACGCACAGGGGCGGCAGGCG
GATGGCCGCTCTCTTTCCACTGGTAGAATACATGTTCTTCGGACGCTGCT
GACCCGGCCGTCGACCCACCCATCGCGCAATCCACAAACAGGCGTATATA
TCTTGTAGGCATGATTTCCATAGTCAGGCGTGTATATCTTGTTGGCATGA
CGCTCACTCTCGGAACAGCTCCTGCGGTAGGTAGTTCGGGTCCCAACACG
ACGTCCACAGGATGTACGTGTAAGTTGGCGCACCAAACCTGTGTTTTGGG
GACGATTTAGGCGCTCTTTTCACCACTTCGCAACCGTGTGTTGAAGTTCA
GAACCCACGGCTTACTTCAAAGTACTGCACCTGGTATATTTTTTGTAGAA
GAAATCAACCCCACGGCTTACTTCAAGTACCTGGTAGCTTCGAAAGAAGC
CGAAATCAAACCATTCGACGAGGCAGCTGGCTCTTTTGTAGTCTACCAGT
TTGATTTCGACTTCTAGAATTACTCCGAAGGTTCCAAGAGCTAGCAGGGT
GATCGCTTGCCGACATGCTGCCAGTTGCGATGGCGCAAAGTTGCGCGGCA
TTGTGAACTGCTTGCGGACGCAGTAGGTTGTAGCTGCCTGCCATAAGGGT
CTCCTGCTGGTTCCGTGGCAAGCCTTTGGTTTGTGTGAGGAGCATCGGTG
GTGACAAAGCTTACCTACATGTCCAGCAGTGACCCCACTGCTGTTTCGCA
GCTGAAAAGTTCAGAGGGGTTTCGGAGTAACATCATGGTGTGCATGCCGC
ACGCTAATAGCTTGTCTGTCCTGCTTCTTTTTTTTTGCATGGCGAACCAA
CGCGTGTGATAAAGTGGGACCCAGGAAACGAGGGTTCCCTTTACATCCAC
CCAACCCAAAGGCATACCACCTGGTACACACGGCACCCCCCCATGATCGC
CGTAGATGAGTGTGAGGTGCTGGTTGCCTCGAAAGATTGGCCTTCATTCT
CCTTCAATCTGGAAAACCGCCTCTTTCTGAATTGAGAGACTGCTTTTGGC
AAGACTGGACCTTGCGTGCTGCATCGAGGTTTTGGGTCGCGCCGCCGCCG
CCGCCGCCGTCGTCTCGTTTGCGTGTTCGCATGCCTAGGAGAGAAGGGGC
GGACGACCCCGCTCATAAGATACATGCTCACAATATGAGTTGGCTCTTCC
CTTTCAAGCGCACCAGCAGCACAGGTCTATATATGTTCCGGGACGGTGCA
AGCCTCCTCTAGAGCATTTACTTTTTCTCTCTCCTTTCTTGCGGCGGTTC
ATTTTCGTTCGAGAAGCATGGCCACACTTTCGTGGTGCGCATGTAGATAC
GATAGATGGTTCGATGCTTGACAAGCCGTGCACCGCCCCATTTCCATGCG
TACCTGACCCAAGCAGAACGAGGAGGAATCTCCGTCGGGGGGCGCACGAT
CAGGCGAACAATGCCCGACTGCAACCAAGCATCCGCACCTCCCCGAGCGA
CAAGTTCCGCCGCCGGGTGACGGCGACAACGACGGCGGCGAGACTGATAA
GGGCACCGGGGAATCTACGTCGCTGCAGCAGCAGCAGCGGCGACAACGTC
GACCCTCCCTCGCGGGGGGGAAGCAAGAGGCCTTCCGGTCGAGAGTCGTG
TCCGGCTTGCTGCTGCACCTCTGTCCCCCGCCCGGGCACTTCGCGGATCT
ACTCGGCTGTGGGGACGAGCTGCTTCGGCACGTCCTTGGGATGCTCGGGG
CGCGGGATCTGGCCACGGTTGGCCTGGTGAGAAGAGGGGGGGTGATCAAG
TCGTGCACGCCGTAGTCGGGGCGGGGGTGTACTCATGGCCGTGCATACCG
TAGTCGTTAGACCATTAACCTCGCATCCCTACAAAGCCGGGACGGGGCAA
GCCGGGTTCTCCCCGGACCATTGCCATAGACCACGCGTCCTCGAGAGGAC
GGAACATTGTTCCCACAGGACCAATCACCTATGATGGCCAATCGTTCCTT
CCAAGGGGGTGGGGCAGGATTAGAGGGAGACCGAAGCGAAGGAGGTAGCA
GTAGACTGCGGACGGACGGGTGGACACCAGGCTGTATAGGTCACTGCTGT
CATTTTGGTACCGTAGTTGACAGCTACGTGGTGATAACCCGTTCGTTGGA
CTCTGGTATGTATGTAGGACCGAATAATCCTTGGTCCCGGGGACGATGGT
GCCGAGAGCTCTTGCCCACCTTCTCGCGATCAAGACCCGAAACCTAGCTC
TCAATATCTCCTGTGCGTCGACGGTTGTTACCCGCCCCCGCTCTAATCTC
TTAGGCATGGAAGACATGAGTACCCCCCCCCCCTCTGGTTCCCTTCTCTC
CGCTTTCGCAGACCGGGCGGGCAGCTGCCGTTAGCGTGGCGGCCGACTGT
CTCTGGGCGGAGCTTGTGGCGGCCGATTTTTCCGAGCGCGAGCAGCACGC
CGTCCTTTTCCTTCAGCCACCGCCGCCGCGGTCGCCGTCGCGTTCGCCGT
CGCTTGACGCTGCTGAAAACGCCACGGCGGCGGCGGCGGCGTCCGAAGGA
GACTGCCGGTGTGGCGGTGATGCAGGTTGTGGCGGCGAATCGCCGGCGGC
GGCTGGGGGTCTGGCGGCGGAAGCG back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig10010:218..3842- >mRNA_Ecto-sp8_S_contig10010.29.1 ID=mRNA_Ecto-sp8_S_contig10010.29.1|Name=mRNA_Ecto-sp8_S_contig10010.29.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10010:218..3842- (Ectocarpus species8 EcLAC_412) ATGAATCAACCCAGAGAAACGACGGAGAGAAAGGGAGGAGGGTATAGCTG GGCAGAAGATGACGACCACGCTCGTGTGCTGCTTGCACTCCACCTAGAGC TGTTAGCCTACGGATTGAATGTTCACGGGGGTGATTCGCCCGCCGTGCGC ATGGAGCAGAGCAGCGCGGGGGCTTTCCCGCCCATGCGCTACGTCGACGG CGGTGGCGGTTGTCGGGTGATAACCATCCATGCTTTGGCGATGTTCGACG ACCTCATCGTGAGCGGGACTGCAGTGGCCACAGGAGGAAGAGATGGAGGA AAAGATAGTAGTGGCGACGCCGTTCATCGGAGAACAACGTTCAGCGTTTC CGAGTGGTCTCCACAGCTGCTGCTGTCATCAACCTCAAGGGATCAGCAGC AGCAGTCTGGGGGGGCTGCTAAGGGCCAGCCTCAGCAGGAGCAGCTCAAG GAGGGACAGCAGAACGAGGAGGAATCTCCGTCGGGGGGCGCACGATCAGG CGAACAATGCCCGACTGCAACCAAGCATCCGCACCTCCCCGAGCGACAAG TTCCGCCGCCGGGTGACGGCGACAACGACGGCGGCGAGACTGATAAGGGC ACCGGGGAATCTACGTCGCTGCAGCAGCAGCAGCGGCGACAACGTCGACC CTCCCTCGCGGGGGGGAAGCAAGAGGCCTTCCGGTCGAGAGTCGTGTCCG GCTTGCTGCTGCACCTCTGTCCCCCGCCCGGGCACTTCGCGGATCTACTC GGCTGTGGGGACGAGCTGCTTCGGCACGTCCTTGGGATGCTCGGGGCGCG GGATCTGGCCACGGTTGGCCTGACCGGGCGGGCAGCTGCCGTTAGCGTGG CGGCCGACTGTCTCTGGGCGGAGCTTGTGGCGGCCGATTTTTCCGAGCGC GAGCAGCACGCCGTCCTTTTCCTTCAGCCACCGCCGCCGCGGTCGCCGTC GCGTTCGCCGTCGCTTGACGCTGCTGAAAACGCCACGGCGGCGGCGGCGG CGTCCGAAGGAGACTGCCGGTGTGGCGGTGATGCAGGTTGTGGCGGCGAA TCGCCGGCGGCGGCTGGGGGTCTGGCGGCGGAAGCG back to top
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