mRNA_Ecto-sp8_S_contig100085.27.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A2E9W8I6_9PROT (TonB-dependent receptor n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E9W8I6_9PROT) HSP 1 Score: 320 bits (819), Expect = 5.840e-104 Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDDVAEAPMSGYAVFNLYSEWTPTFAEYMSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTARAKF 483 DLSNANRTVAYDLMTRGFTVNAGYDF QAFVRGNWSHTIVRLDGVPPSST+AAFYGQQIGDMFSLEGGYSW NIGLTTGASSEFVLRNDDVAEAPM GY VFNLYSEWTPTFAEY+SLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTA+AKF Sbjct: 484 DLSNANRTVAYDLMTRGFTVNAGYDFDQAFVRGNWSHTIVRLDGVPPSSTTAAFYGQQIGDMFSLEGGYSWDNIGLTTGASSEFVLRNDDVAEAPMPGYVVFNLYSEWTPTFAEYVSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTAKAKF 644
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A2N3KXC6_9PROT (TonB-dependent receptor n=2 Tax=Thalassospira marina TaxID=2048283 RepID=A0A2N3KXC6_9PROT) HSP 1 Score: 166 bits (419), Expect = 5.650e-45 Identity = 80/165 (48.48%), Postives = 111/165 (67.27%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDD---VAEAPMSGYAVFNLYSEWTPTF-AEYMSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTARAKF 483 DLS+ +R DL+TRG ++ Y F A++R +SHTIVR DG PP ST++A+ G +GD+ +L+ G W+++GL G SSE LRNDD E P+ Y V NLY EWTP + ++LR DA NIFD+AYS+R TTG D+ T PYL+PGR+F+++A+ F Sbjct: 512 DLSSVDRQTTADLVTRGINLSGTYQFDTAYIRTTYSHTIVRADGAPPVSTASAWQGVLLGDIITLDAGKEWRDLGLRAGMSSELALRNDDPKKYGEQPIDTYFVANLYGEWTPEMLSNAVTLRIDANNIFDRAYSNRTTTGYDSIRTEPYLDPGRSFILSAKVTF 676
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A1Y2KXW1_9PROT (TonB-dependent receptor n=2 Tax=Thalassospira TaxID=168934 RepID=A0A1Y2KXW1_9PROT) HSP 1 Score: 161 bits (408), Expect = 2.020e-43 Identity = 76/165 (46.06%), Postives = 111/165 (67.27%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDDVAE---APMSGYAVFNLYSEWTPTF-AEYMSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTARAKF 483 DLS+ +R DL TRG ++ Y F A++R ++HTIVR DG PP ST++A+ G +GD+ +++ G W ++GL G SSE L+NDD + P+ Y V NLY EWTP ++ ++LR DA NIFD+AY+DR TTG D+ T PY++PGR+F+++A+ KF Sbjct: 512 DLSDTDRQTTVDLATRGINLSGTYQFDTAYIRATYTHTIVRSDGAPPVSTASAWQGVLLGDIITIDAGKEWHDLGLRAGMSSELALKNDDPEKYGAEPIDTYFVANLYGEWTPEMLSQAVTLRVDANNIFDRAYTDRTTTGYDSIRTEPYMDPGRSFVLSAKVKF 676
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A367V2X4_9PROT (TonB-dependent receptor n=2 Tax=Thalassospira TaxID=168934 RepID=A0A367V2X4_9PROT) HSP 1 Score: 139 bits (351), Expect = 1.780e-35 Identity = 74/166 (44.58%), Postives = 104/166 (62.65%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRND---DVAEAPMSGYAVFNLYSEWTPTFA-EYMSLRFDAKNIFDQAYSDRATTGQDNT-VTNPYLEPGRTFLVTARAKF 483 DLS+A R DL TRG ++A Y++ F R +SHT V+ DG P ST A++ G +GD+F+ + G+S+ GL G SSEF L +D D + Y V NLY+EW P + ++LR DA NIFD+ Y DRATTG D++ ++ P+ EPGRTFL++A+ F Sbjct: 507 DLSSATRNSTVDLDTRGVNLSAQYNYGPGFARLTYSHTTVKTDGGVPLSTEASYQGVIMGDIFNFDAGHSFDEYGLRVGGSSEFALSDDRPEDSGNEKLDSYVVANLYAEWVPAVLNDAVTLRVDALNIFDRDYIDRATTGYDSSRISEPFHEPGRTFLLSAKVDF 672
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A1Y2LB68_9PROT (TonB-dependent receptor n=1 Tax=Thalassospira alkalitolerans TaxID=1293890 RepID=A0A1Y2LB68_9PROT) HSP 1 Score: 137 bits (344), Expect = 1.690e-34 Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 7 SNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDDVAE---APMSGYAVFNLYSEWTPTFAEYMSLRFDAKNIFDQAYSDRATTGQDNT-VTNPYLEPGRTFLVTARAKF 483 S R DL+T+G+ +++ Y++ F R +SHT V +G P ST+A++ G GDMFSLE G+SW ++GL G++SE L NDD + + Y V NLY EWTP ++LR DA NI D+ Y DR T G D++ V PY EPGRTFLV+A+ F Sbjct: 517 STVIRNSTIDLVTKGYNLSSTYNYGPGFARLTYSHTDVETNGGAPLSTNASYQGVLQGDMFSLEIGHSWDDLGLRVGSTSELALSNDDPEKNGFPKLDTYFVTNLYGEWTPASLSAVTLRVDALNILDRDYIDRTTPGYDSSQVGEPYHEPGRTFLVSAKVAF 679
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A154VF21_9PROT (TonB-dependent receptor n=5 Tax=Thalassospira TaxID=168934 RepID=A0A154VF21_9PROT) HSP 1 Score: 136 bits (342), Expect = 3.070e-34 Identity = 73/166 (43.98%), Postives = 103/166 (62.05%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDDVAEA---PMSGYAVFNLYSEWTP-TFAEYMSLRFDAKNIFDQAYSDRATTGQDNT-VTNPYLEPGRTFLVTARAKF 483 DLS+A R DL TRG ++A Y + F R +SHT V+ DG P ST A++ G +GDMF+ + G+S+ + GL G ++EF L +D E + Y V NLY+EW P + ++LR DA NI D+ Y DRATTG D+T ++ P+ EPGRTFL++A+ F Sbjct: 505 DLSSATRNSTVDLDTRGVNLSAMYSYGPGFARLTYSHTNVKTDGGVPLSTEASYQGVIMGDMFNFDAGHSFDSYGLRVGGNAEFALADDSPEERGNEKLDSYFVANLYAEWVPGVLNDAVTLRVDALNILDRDYIDRATTGYDSTRISEPFHEPGRTFLISAKVDF 670
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A199Y3H6_9PROT (TonB-dependent receptor n=1 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A199Y3H6_9PROT) HSP 1 Score: 134 bits (338), Expect = 1.100e-33 Identity = 69/165 (41.82%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRND---DVAEAPMSGYAVFNLYSEWTP-TFAEYMSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTARAKF 483 DLS +NR DL TRG ++A Y + +VR ++HT V+ DG P STSAA+ G +GD+ +++ + + + G+ G +SE L +D D + Y V NLY+EW P ++LR DA NIFD+ Y R TTG DN+ PY EPGRTFL++A+ F Sbjct: 508 DLSTSNRNTTVDLDTRGVNLSATYTYGPGYVRAGYTHTNVKSDGAVPVSTSAAYQGVIVGDIINIDAAHRFDDYGIRIGGNSELALSDDSPEDNGNEKLDSYFVANLYAEWVPDALNNAVTLRVDAMNIFDRDYVARTTTGYDNSNVEPYHEPGRTFLISAKVDF 672
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: UPI00051A3A75 (TonB-dependent receptor n=1 Tax=Thalassospira australica TaxID=1528106 RepID=UPI00051A3A75) HSP 1 Score: 133 bits (334), Expect = 3.900e-33 Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 1 Query: 1 DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRND---DVAEAPMSGYAVFNLYSEWTP-TFAEYMSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTARAKF 483 DLS ++R DL TRG ++A Y + +VR ++HT V+ DG P STSA++ G +GD+ +++ +S+ G+ G +SE L +D D + Y V NLY+EW P T ++LR DA NIFD+ Y R TTG DN+ PY EPGRTFLV+A+ F Sbjct: 508 DLSTSDRNTTVDLDTRGVNLSATYTYGPGYVRAGYTHTNVKSDGAVPVSTSASYQGVIVGDIINIDAAHSFDAYGVRVGGNSELALSDDSPEDNGSDELDTYFVANLYAEWVPDTLNNAVTLRVDALNIFDRDYVARTTTGYDNSNVEPYHEPGRTFLVSAKVDF 672
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: A0A154L625_9PROT (TonB-dependent receptor n=6 Tax=Thalassospira TaxID=168934 RepID=A0A154L625_9PROT) HSP 1 Score: 131 bits (329), Expect = 1.950e-32 Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 1 Query: 7 SNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDDVAE---APMSGYAVFNLYSEWTP-TFAEYMSLRFDAKNIFDQAYSDRATTGQDNT-VTNPYLEPGRTFLVTARAKF 483 S R DL+T+G+ ++A Y++ F R +SHT V DG P ST+A++ G GD+F+ E + W ++G+ G +SE L NDD E + Y V NLY EW P ++LR DA NIFD+ Y DRAT G D+ V PY EPGRTFLV+A+ F Sbjct: 518 STVYRNTTIDLVTQGYNLSAAYNYGPGFARVTYSHTDVETDGDAPLSTNASYQGVLQGDIFTFEVAHGWDDLGVRVGTTSELALANDDPEENGFPKLDTYFVANLYGEWKPEALNNAVTLRVDALNIFDRDYIDRATPGYDSAQVGEPYHEPGRTFLVSAKVTF 681
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Match: UPI00191398B4 (TonB-dependent receptor n=1 Tax=Skermanella sp. TT6 TaxID=2775420 RepID=UPI00191398B4) HSP 1 Score: 125 bits (314), Expect = 2.410e-30 Identity = 60/159 (37.74%), Postives = 94/159 (59.12%), Query Frame = 1 Query: 13 ANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTSAAFYGQQIGDMFSLEGGYSWKNIGLTTGASSEFVLRNDDV--AEAPMSGYAVFNLYSEWTPTFAEYMSLRFDAKNIFDQAYSDRATTGQDNTVTNPYLEPGRTFLVTARAKF 483 A+ T+ D+ ++G+ + AGY + + +VR ++ V +DG P S + +G + +L G S+ N+ LT GA E VL DDV + P+ GY VFN+++E+ P +S R D +N+FD Y+DRAT GQ+ P +PGR+FL++A AKF Sbjct: 592 ASATLRRDVESKGYELGAGYSWNEGYVRAKFADIDVTIDGQPADSDIGTYLATPVGQIITLGGAQSFTNLDLTVGADVEIVLDYDDVQAGQRPLDGYEVFNIFAEYRPAQYSNLSFRLDVRNLFDATYADRATYGQEFGTVTPLYQPGRSFLISASAKF 750 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100085.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100085.27.1 >prot_Ecto-sp8_S_contig100085.27.1 ID=prot_Ecto-sp8_S_contig100085.27.1|Name=mRNA_Ecto-sp8_S_contig100085.27.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=162bp DLSNANRTVAYDLMTRGFTVNAGYDFKQAFVRGNWSHTIVRLDGVPPSSTback to top mRNA from alignment at Ecto-sp8_S_contig100085:65..550- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig100085.27.1 ID=mRNA_Ecto-sp8_S_contig100085.27.1|Name=mRNA_Ecto-sp8_S_contig100085.27.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100085:65..550- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100085:65..550- >mRNA_Ecto-sp8_S_contig100085.27.1 ID=mRNA_Ecto-sp8_S_contig100085.27.1|Name=mRNA_Ecto-sp8_S_contig100085.27.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100085:65..550- (Ectocarpus species8 EcLAC_412)back to top |