mRNA_Ecto-sp8_S_contig10007.24.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: D7FSU8_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU8_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 6.950e-172 Identity = 241/244 (98.77%), Postives = 243/244 (99.59%), Query Frame = 1 Query: 1 TLWYAVGLIALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSGGKKDSKIKKQ 732 TLWYAVGL+ALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHD+GVVGFFTACNL LTFMQWYWGYLIVRAATKMLSGGKKDSKIKKQ Sbjct: 25 TLWYAVGLLALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDVGVVGFFTACNLALTFMQWYWGYLIVRAATKMLSGGKKDSKIKKQ 268
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A835YYL5_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL5_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.310e-68 Identity = 114/246 (46.34%), Postives = 155/246 (63.01%), Query Frame = 1 Query: 1 TLWYAVGLIALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSGG---KKDSKIKK 729 T + + L Q+ + V + GPF SD ALFAHQ+C+ +G YYW+ EAN + DRLY VGA V+ +NLAFQ +D AT+ I L K EM+VHH LA ++ +F++RD Y HYYA FFLG++EVS++PL VDVFK F AA +G+N L+R+ FA F+++R +YWP V+ R+ DT +Q GT H+ + FF+ N+ LT +QWYW LIVRA KM G KKD + K Sbjct: 13 TFVWLLFLTTCQIFTQVVASKRGPFVSDPALFAHQVCAFFATCAIGGYGTYYWYTEANDVHDRLYDVMVGAPVVTHINLAFQIFDFFATLLIADLRKPEMVVHHTLAVLLAFFVLRDAYGHYYACFFLGMTEVSAIPLCIVDVFKHFRGFAAQHDGINTLMRVLFAFSFLIIRGIYWPTVSYRYFMDTAACLQKGTCHNNAMAIFFSVSNVLLTLLQWYWASLIVRALVKMAKSGNNVKKDVESSK 258
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A7S3XQI7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQI7_HETAK) HSP 1 Score: 173 bits (438), Expect = 2.310e-46 Identity = 92/241 (38.17%), Postives = 139/241 (57.68%), Query Frame = 1 Query: 1 TLWYAVGLIALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWF-GEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLM--RDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSGGKKD 714 T+ + +GL + VFK+ GPFK+ + AHQLC++ CI +CA++G WF G +EDRLY A + K+NLAFQ +D V T ++ + +++ H C FL Y+HYY +F+ G SE+S+VPLVFVD+FK+FP V + + + FA++F+V RV+ WPIV + ++F SV GT H + VV +F LT +Q YWG +++A +L K+D Sbjct: 33 TVQWILGLTVIYSTSNYVFKKSGPFKTKPGVAAHQLCALFCILYCAYYGATLWFFGGMIEVEDRLYQNIGPAEKLIKINLAFQTFDFVTTFLDKQMHQRSIMLAHHFVAGSCAFLSVYHATYLHYYMVFYTGCSEISTVPLVFVDLFKYFPKVGEKVPTFDLICKALFAILFIVFRVVLWPIVTFSYYKESFYSVMDGTAHSVPVVMYFITFGFALTLLQQYWGIKVLKAIGAILFPSKED 273
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A6V3SI78_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3SI78_9EUKA) HSP 1 Score: 140 bits (354), Expect = 2.790e-34 Identity = 75/205 (36.59%), Postives = 120/205 (58.54%), Query Frame = 1 Query: 97 AHQLCSMVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFP-----DVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKML 696 AHQ+C +A+CA G + W A+ ++DR+YG A ++ + N AFQ YDL+ ++ + L + I HH +A ++ Y+ + + YY+IFF G+SEVSS+ L FV+ FK FP D+ VN R FA++F+ +RV+YWP V+ + FD+ G++ G H + + A N+ LT +Q++WG +I+R K L Sbjct: 47 AHQICFFFSMAYCAVIGCWLWANRAHDLKDRVYGHLRPANLLCEFNCAFQIYDLIVSLLVPTLRHFDRIAHHTVAGILAYWSYKYHLLLYYSIFFFGVSEVSSIFLTFVEFFKEFPSLRDQDLNPFLSQVNEHSRTMFAVLFIAIRVVYWPYVSMQFWFDSLGALTNGGAHPVEITCVLLA-NIGLTLLQFHWGTIILRQIHKKL 250
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A7S3TES5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TES5_9SPIT) HSP 1 Score: 135 bits (339), Expect = 2.990e-32 Identity = 85/253 (33.60%), Postives = 130/253 (51.38%), Query Frame = 1 Query: 10 YAVGLIALQVVGREVFKRY-GPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGE------ANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHAL--ATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFP---DVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSGGKKDSKIKKQ 732 +A GL+ALQ V V P D + AHQL V A+ A+ G WF + + RLY S + + Q +DL+ T + + K+E +VHH L AT +C + Y+ Y A FF G+ E+SSVPLVFVD+F+ +P + + + +N +R+SFA+ F+++R + WP+V + + D +AG + + F LTF+Q YWGY +V A KML G + D + + Q Sbjct: 33 WAFGLLALQAVLMVVLSIIPSPMSEDVGVAAHQLTIAVPFAYAAYHGARLWFFDEAFAAMGTSAHGRLYAASEDCFSLTRFMFGMQVFDLMVTFIVPSMRKLEHLVHHGLTLATALCG--LSGPYLMYQAGFFFGLVEISSVPLVFVDLFRKYPALHEKSKIGDALNEFVRLSFAVTFLLIRCVMWPVVVMQLVLDLISVYRAGQLQGGFQMMIFGCTCSVLTFLQLYWGYKVVAATVKMLKGDRSDREKEAQ 283
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A7S3XNJ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ4_HETAK) HSP 1 Score: 134 bits (338), Expect = 4.230e-32 Identity = 81/246 (32.93%), Postives = 136/246 (55.28%), Query Frame = 1 Query: 1 TLWYAVGLIALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGV-YYWFGE-----ANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLC-KVEMIVHHALATVMCYF-LMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSGGKKD 714 T+ + + + + VV F+ GPF+S L HQL S+V + +C+ G+ + W E N+I DRLY ++ I KV LAFQF++ + T+F L + M+VHHA+ + +F Y+HYY++F+ G+SE+SS+PLVFV++F++FP A + + F F+ R++ W IV DT ++ H V +F A NL L+ +Q+YWG+++++ A +++ D Sbjct: 16 TVAWFLAICLVHVVLLSAFRSRGPFQSKPWLATHQLSSLVGLIYCSAAGIAHMWSNEDSHLFTNSI-DRLYKFNMAGQDIAKVQLAFQFFNFLVTLFESELANRPVMLVHHAVTASLAWFGTYHATYLHYYSLFYYGLSEISSIPLVFVELFRYFPGFAEKNRIADIGCKAIFFFCFIYFRLVLWSIVNFSFWKDTLSTLADQKSHCPAVAVYFLAANLILSGLQFYWGWILIKEAFNLVTSAPSD 260
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A7S0H760_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H760_9EUKA) HSP 1 Score: 132 bits (331), Expect = 1.090e-30 Identity = 72/221 (32.58%), Postives = 118/221 (53.39%), Query Frame = 1 Query: 49 EVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPD-----VAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKML 696 F+ D AHQ C ++ + + A +G + W + IEDR+Y GA+++ K+N AFQ YDLV ++ + L K + + HH + ++ ++ YY+IFF G+SEVSSV L FV+ FK FP + N + R+ FA +F+ +RV+YWP V+ + D ++ G + +V A N+ LT +Q+YWG +I++ + L Sbjct: 47 RTFRFSSLLSKDPGFVAHQFCFLLVMLYSAVYGCWLWANRSFMIEDRIYDYQEGAVILAKLNFAFQIYDLVISMSVKTLRKPDRVAHHFITAILAFWSYHYNLCLYYSIFFFGVSEVSSVFLTFVEFFKEFPSLRDEAITPMLFQFNEISRMMFAGLFLSIRVVYWPYVSMQFWGDALDALTEGRPYPFELVCTLMA-NIGLTILQFYWGVIILKQIRRKL 266
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: R1EAR8_EMIHU (TLC domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EAR8_EMIHU) HSP 1 Score: 126 bits (317), Expect = 6.950e-29 Identity = 76/221 (34.39%), Postives = 118/221 (53.39%), Query Frame = 1 Query: 70 PFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGEAN------TIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDV---AASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVH-DIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSG 702 P SD + AHQL + V A+ A+ G W+ + RLY S A + + Q +DL+ T+ + L K E +VHH + + + ++ Y A FF G EVSS+PLVFVD+F+ FP + + + VN ++R++FAL F+++R + WP+ + L D + AG + + + F C++ LTF+Q YWG IVRA KML+G Sbjct: 87 PMSSDVGMAAHQLTAAVPFAYAAYHGTRLWYFDEQHAALGADARGRLYAASEDAFSLARFMFGMQVFDLLVTLIVPSLRKAEHLVHHGMTLLTALCGLSGPFLMYQAAFFFGFVEVSSLPLVFVDLFRQFPRLHEGSPAGHSVNEMVRVAFALSFLLIRCVLWPLAVLQLLRDLYAVWAAGELEGQLQMATFCVTCSV-LTFLQLYWGGKIVRALLKMLAG 306
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: R1EM65_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EM65_EMIHU) HSP 1 Score: 120 bits (302), Expect = 3.140e-27 Identity = 83/242 (34.30%), Postives = 126/242 (52.07%), Query Frame = 1 Query: 16 VGLIALQVVGREVFKRYGPFKSDAALFAHQLCSMVCIAHCAFWGVYYWFGE----ANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMR---DCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTACNLTLTFMQWYWGYLIVRAATKMLSGGKKDSK 720 V L L ++ +FKR P AHQ+ ++ + AF G W + A +DR++G A + V FQ +DL T+ LCK + I+HH+++ V+ + ++ YY FF G SEVSSVPL VD+F+ +A++ VN R+SFA +F+ +R YWP VA FD + A ++ + A N+ LT +Q+YWG LIV+ KM++G KKDS+ Sbjct: 19 VTLFLLWILLCLLFKRL-PILDKPLGSAHQVVVLLPFCYLAFQGSRLWLFDDGFAAAFADDRVFGFYAPAQSLVLVFFGFQVWDLTVTLVTPELCKPDAIIHHSVSGVLALIGLSAGTSGFLLYYGAFFFGFSEVSSVPLAAVDIFRMNKRLASAMPSVNEACRVSFAALFLGIRCAYWPFVA----FDFWRQTLASGA-PFSLLSVWWAANIGLTLLQYYWGMLIVKGIIKMVTG-KKDSE 253
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Match: A0A7S0SRD6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SRD6_9CHLO) HSP 1 Score: 118 bits (296), Expect = 2.140e-26 Identity = 74/223 (33.18%), Postives = 118/223 (52.91%), Query Frame = 1 Query: 85 AALFAHQLCSMVCIAHCAFWGVYYW---FGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAASFEGVNNLLRISFALIFMVVRVLYWPIVAARHLFDTFGSVQAGTVHDIGVVGFFTA----CNLTLTFMQWYWGYLIVRAATKMLSGGKKDSKIKKQ 732 A L A ++ +A+CA+ GV W + T E RLYG S A+ + + N AFQ +D ++F L EM+ HHALA +MCY+ + Y+HYYAI+F+G+ E+SSVPLV VD+ K++P++ F ++ ++ F ++F+ VR + W A D G ++AG G+ TA L T +Q W + + +L G + K++ Sbjct: 52 AFLLAFEITCAGPLAYCAYEGVVAWVYKLDDFTTPEQRLYGVSPFAVKVMQANFAFQVWDFSVSLFHRELNSPEMLTHHALAALMCYWGLTMPYMHYYAIYFMGVVEISSVPLVLVDICKYYPELQRRFPALDLGSKVCFGVLFVAVRDIVWVKTAIAVWTDGVGILRAGNFPP-QYPGWITASVLVAQLFFTCLQVVWTKQLFQGLADLLRGDADGGEKKEK 273 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10007.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10007.24.1 >prot_Ecto-sp8_S_contig10007.24.1 ID=prot_Ecto-sp8_S_contig10007.24.1|Name=mRNA_Ecto-sp8_S_contig10007.24.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=207bp MVCIAHCAFWGVYYWFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVAback to top mRNA from alignment at Ecto-sp8_S_contig10007:897..7020- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10007.24.1 ID=mRNA_Ecto-sp8_S_contig10007.24.1|Name=mRNA_Ecto-sp8_S_contig10007.24.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6124bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10007:897..7020- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10007:897..7020- >mRNA_Ecto-sp8_S_contig10007.24.1 ID=mRNA_Ecto-sp8_S_contig10007.24.1|Name=mRNA_Ecto-sp8_S_contig10007.24.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10007:897..7020- (Ectocarpus species8 EcLAC_412)back to top |