mRNA_Ecto-sp8_S_contig10005.23.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10005.23.1 vs. uniprot
Match: D7FI49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI49_ECTSI) HSP 1 Score: 549 bits (1415), Expect = 3.000e-194 Identity = 296/343 (86.30%), Postives = 306/343 (89.21%), Query Frame = 3 Query: 72 EEGDIDLWHKDNNQGTTCVTTPAEGRVVVHGGLKKKNGKTVRLTAEALRSLNPAGLSECGGRRPAASHSSGETLDNSSQHSSHSSSHNAVGIRTRRNGRGDVGKRPSPGVRLSSGVDVVAEWDRHLARVKHDDDAEDGRGHATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAIGGRGGGXXGHNTIGRGGKGAGLKGDDGQPLMYGMRYIIASGRRASKGIKGGGAGLWREXXXXXXXXAIPTLLDSGWKNGGGSRRKSRRATRTRKNAGYGDGGGHKLSCGATSREEGKLRRVSPDNSALRAKLFALAKGERRESLLFKRAFLNAEGGSVSLRQ 1100 EEGDIDLWHKDNN GTTCVTTPAEGRVVVHGGL KKNGKT RLTAEALRSLNPAGLSECGGRRPAASHSSGETLDNSSQHSSHSSS+NAVGIRTRRNGRGDVGKRPS GV+ SSGVDV+AEWDRHLARVK DDDAED RG ATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFA+G GG XX TIGRGGKG GLKGD GQPLMYGM+ I+ASGRR +KGIKG GAGLW+E AIPTLLDSGWKNGGGSRR+SRRATRTRKNAGYGD G K SCGAT REEGKL R SPDNSALRA+LFALAKGERRESLLFKRAFLNAEGGS RQ Sbjct: 45 EEGDIDLWHKDNNGGTTCVTTPAEGRVVVHGGLTKKNGKTGRLTAEALRSLNPAGLSECGGRRPAASHSSGETLDNSSQHSSHSSSNNAVGIRTRRNGRGDVGKRPSRGVQFSSGVDVIAEWDRHLARVKRDDDAEDCRGRATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAMGDSGGXXXXXGTIGRGGKGVGLKGD-GQPLMYGMKDIVASGRRGTKGIKGSGAGLWKEAEDEEEDEAIPTLLDSGWKNGGGSRRRSRRATRTRKNAGYGDDG-DKSSCGATCREEGKLGRGSPDNSALRAELFALAKGERRESLLFKRAFLNAEGGSAFSRQ 385
BLAST of mRNA_Ecto-sp8_S_contig10005.23.1 vs. uniprot
Match: D7G6S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S9_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 2.760e-136 Identity = 261/401 (65.09%), Postives = 281/401 (70.07%), Query Frame = 3 Query: 78 GDIDLWHKDNNQGTTCVTTPAEGRVVVHGGLKKKNGKTV-RLTAEALRSLNPAGLSECGGRRPAASHSSGETLDNSSQHSSHSSSHNAVGIRTRRNGRGDVGKRPSPGVRLSSGVDVVAEWDRHLARVKHDDDAEDGRGHATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAI--GGRGGGXXGHNTIGRGGKGAGLKGDDGQPLMYGMRYIIASGRRASKGIKGGG-AGLWREXXXXXXXX--AIPTLLD-----------------------------------------------------SGWKNGGGSRRKS-RRATRTRKNAGYGDGGGHKLSCGATSREEGKLRRVSPDNSALRAKLFALAKGERRESLLFKRAFLNAEGGSVSLRQ 1100 G IDLWHKDN+ GTTCVTTPAEGRVVVHGGL+KK K + RLTAEALRSLNP+GLS CGGRRPAASHSSGETLDNSSQHSSHS ++NAVGIR+ RNG +RPS GVR SSGVDV+AEWD HLA V HD + EDGRG ATITLGG D+VSVAED VTGPRRSFAQAP S SRAARFAI GGG G++TIGRGGKG G GD GQPL YGM+ IIASG R K +GLW E XXXXXXX AIPTLLD SGWK+GGGSRR++ RRATR RK+AG G K CGA S EEGKLRRVS DNSALRA+LFALAKGERRESLLFKRAFLNAEGGSVS RQ Sbjct: 47 GGIDLWHKDNSGGTTCVTTPAEGRVVVHGGLEKKKDKKIGRLTAEALRSLNPSGLSACGGRRPAASHSSGETLDNSSQHSSHSLNNNAVGIRSARNGASK--RRPSHGVRFSSGVDVIAEWDLHLASVNHDHEEEDGRGTATITLGGADVVSVAEDPVTGPRRSFAQAPRSFSRAARFAIEYSRGGGGGVGNDTIGRGGKGVGPYGD-GQPLTYGMKDIIASGDRGIKXXXXXXXSGLWGEEXXXXXXXXEAIPTLLDRYDGSLASLKSLVFPRSITDRPVKRLFDASVLASTSPAKSMTATELDVILGRLSGWKHGGGSRRRAARRATRARKSAGCGSR--DKSGCGAGSGEEGKLRRVSSDNSALRAELFALAKGERRESLLFKRAFLNAEGGSVSSRQ 442
BLAST of mRNA_Ecto-sp8_S_contig10005.23.1 vs. uniprot
Match: A0A6H5K951_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K951_9PHAE) HSP 1 Score: 375 bits (962), Expect = 2.600e-124 Identity = 243/464 (52.37%), Postives = 263/464 (56.68%), Query Frame = 3 Query: 60 KGGGEEGDIDLWHKDNNQGTTCVTTPAEGRVVVHGGLKKKNGKTVRLTAEALRSLNPAGLSECGGRR--------------------------------------------------------------------------------------------PAASHSSGETLDNSSQHSSHSSSHNAVGIRTRRNGRGDVGKRPSPGVRLSSGVDVVAEWDRHLARVKHDDDAEDGRGHATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAIGGRGGGXXGHNTIGRGGKGAGLKGDDGQPLMYGMRYIIASGRRASKGIKGGGAGLWREXXXXXXXXAIPTLLDSG------------------------WKNG--GGSRRKSRRATRTRKNAGYGDGGGHKLSCGATSREEGKLRRVSPDNSALRAKLFALAKGERRESLLFKRAFLNAEGGSVSLR 1097 K G EE IDLWHKDNN GTTCVTTPAEGRVVV GGLKKKNGKT R AE PAASHSSGETLDN+SQHS HS+S NAVGIR+RRN R GK PS G + SSGVDV+AEWDRHLA+V DDDAED RG ATITLGGDDIVS+AEDH T R SFAQAP LSRAARFAIGG G G G +TIGRGGKGAGL + GQPLMYGM+ IIA GRR +KGIKG GAGLWRE AIPTLLD ++ G +RR+ RRA RTRKNAG G GGG K SCG+TSREEGKLRRVSPDNSALR +LFA+ K ERR++LL KRA LNAEGGSVS R Sbjct: 2 KSGDEENHIDLWHKDNNGGTTCVTTPAEGRVVVRGGLKKKNGKTGRHAAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASHSSGETLDNNSQHSGHSNSSNAVGIRSRRNARCGAGKIPSRGDQFSSGVDVIAEWDRHLAKVNRDDDAEDRRGRATITLGGDDIVSMAEDHTTELRSSFAQAPRLLSRAARFAIGGSGSGDGGDDTIGRGGKGAGLNAE-GQPLMYGMKDIIAPGRRGTKGIKGSGAGLWREEEDGEENEAIPTLLDRYDGSLASLESLVFPQSITDQPVKRLFEAGVLASTRRRPRRAIRTRKNAGCGGGGGDKSSCGSTSREEGKLRRVSPDNSALRVELFAITKDERRKALLSKRALLNAEGGSVSSR 464 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10005.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10005.23.1 >prot_Ecto-sp8_S_contig10005.23.1 ID=prot_Ecto-sp8_S_contig10005.23.1|Name=mRNA_Ecto-sp8_S_contig10005.23.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=361bp MLLPWRSDDDDNGKGGGEEGDIDLWHKDNNQGTTCVTTPAEGRVVVHGGLback to top mRNA from alignment at Ecto-sp8_S_contig10005:3938..6470- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10005.23.1 ID=mRNA_Ecto-sp8_S_contig10005.23.1|Name=mRNA_Ecto-sp8_S_contig10005.23.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2533bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10005:3938..6470- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10005:3938..6470- >mRNA_Ecto-sp8_S_contig10005.23.1 ID=mRNA_Ecto-sp8_S_contig10005.23.1|Name=mRNA_Ecto-sp8_S_contig10005.23.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10005:3938..6470- (Ectocarpus species8 EcLAC_412)back to top |