mRNA_Ecto-sp8_S_contig10000.17.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A6H5L357_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L357_9PHAE) HSP 1 Score: 236 bits (603), Expect = 9.610e-75 Identity = 125/140 (89.29%), Postives = 126/140 (90.00%), Query Frame = 1 Query: 1 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 420 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELA VFYTTPLKALSNQKFQDFRRQFGE+KVGLLTGDSSFNRDAQ VAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV Sbjct: 42 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV----------VFYTTPLKALSNQKFQDFRRQFGEDKVGLLTGDSSFNRDAQ---VAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 168
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI) HSP 1 Score: 235 bits (599), Expect = 4.900e-69 Identity = 124/140 (88.57%), Postives = 126/140 (90.00%), Query Frame = 1 Query: 1 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 420 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELA VFYTTPLKALSNQKFQDFRRQFGE+KVGLLTGDSSFNRDAQ VAVMTTEVFRNMLYDSEETG+LDDVFAVVFDEFHYMNDRDRGTV Sbjct: 384 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV----------VFYTTPLKALSNQKFQDFRRQFGEDKVGLLTGDSSFNRDAQ---VAVMTTEVFRNMLYDSEETGELDDVFAVVFDEFHYMNDRDRGTV 510
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA) HSP 1 Score: 187 bits (475), Expect = 2.430e-52 Identity = 105/153 (68.63%), Postives = 113/153 (73.86%), Query Frame = 1 Query: 1 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEE-------------TGDLDDVFAVVFDEFHYMNDRDRGTV 420 ALFPF+LD FQ EAL L R NVIVSAPTGSGKTV GELA + + G VFYTTPLKALSNQKF DFRR+FG E+VGLLTGDSS+NR+AQ V VMTTEVFRNMLYDS +L DVFAVVFDEFHYMNDRDRGTV Sbjct: 117 ALFPFDLDGFQLEALDALGARKNVIVSAPTGSGKTVAGELA-IYYALALGLRVFYTTPLKALSNQKFSDFRRRFGAERVGLLTGDSSYNREAQ---VCVMTTEVFRNMLYDSAAGIVGGEGAAATLGPDELKDVFAVVFDEFHYMNDRDRGTV 265
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A7S4DB23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB23_HETAK) HSP 1 Score: 168 bits (425), Expect = 4.870e-51 Identity = 94/133 (70.68%), Postives = 101/133 (75.94%), Query Frame = 1 Query: 22 DPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 420 D FQ EAL L R N IVSAPTGSGKTV GELA + + G VFYT+PLKALSNQK+QDFRRQFG E+ GLLTGD+S NR AQ V VMTTEVFRNMLY+ E DL DVFAVVFDEFHYMND RGTV Sbjct: 1 DGFQLEALTALGQRKNAIVSAPTGSGKTVAGELA-IYYALALGLRVFYTSPLKALSNQKYQDFRRQFGAERAGLLTGDTSINRGAQ---VCVMTTEVFRNMLYEEE---DLLDVFAVVFDEFHYMNDPSRGTV 126
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A7S0QGM8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QGM8_9CRYP) HSP 1 Score: 165 bits (417), Expect = 2.430e-48 Identity = 87/138 (63.04%), Postives = 106/138 (76.81%), Query Frame = 1 Query: 7 FPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 420 FP+ LD FQ +A+R L + +VIVSAPTGSGKTV GE A + + G V YTTPLKALSNQK+ DF +QFGEE+VGLLTGD S NR+ + V V+TTEV+RNMLYD +E+G + DV +V+ DEFHYMNDRDRGTV Sbjct: 31 FPYPLDTFQIDAVRSLVEKKSVIVSAPTGSGKTVCGE-AAVYLGLALGKKVLYTTPLKALSNQKYSDFCKQFGEERVGLLTGDVSLNREN--ATVIVLTTEVYRNMLYD-KESGTVSDVHSVILDEFHYMNDRDRGTV 164
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A4D9D0G8_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0G8_9STRA) HSP 1 Score: 175 bits (443), Expect = 5.060e-48 Identity = 94/140 (67.14%), Postives = 108/140 (77.14%), Query Frame = 1 Query: 1 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 420 A+FPF LD FQ AL L GR NV+VSAPTGSGKTV GELA + + V+YTTPLKALSNQKF DF RQFG E+VGLLTGD++ NR AQ V +MTTEV+RNMLY + + G+LD VFAVVFDEFHYMND +RGTV Sbjct: 164 AIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKTVAGELA-IYYALALDLRVYYTTPLKALSNQKFADFCRQFGPERVGLLTGDTNINRGAQ---VTIMTTEVYRNMLY-TGDAGELDQVFAVVFDEFHYMNDPERGTV 298
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: F0YPB7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPB7_AURAN) HSP 1 Score: 165 bits (418), Expect = 3.980e-47 Identity = 93/139 (66.91%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 7 FPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDL-DDVFAVVFDEFHYMNDRDRGTV 420 FPF LD FQ +ALR L NVIVSAPTGSGKTV GELA + + G VFYTTPLKALSNQKF DF QFG +VGL TGDS RDA V VMTTEVFRNM+YD E ++ DVFAVVFDEFHYMND RGTV Sbjct: 1 FPFPLDAFQRDALRSLRADRNVIVSAPTGSGKTVAGELA-IAYALSVGKRVFYTTPLKALSNQKFGDFCAQFGAGRVGLSTGDSGVRRDAA---VVVMTTEVFRNMIYDDEGRAEIAKDVFAVVFDEFHYMNDAQRGTV 135
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A7S0YW95_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YW95_9CRYP) HSP 1 Score: 159 bits (402), Expect = 1.660e-46 Identity = 85/136 (62.50%), Postives = 102/136 (75.00%), Query Frame = 1 Query: 13 FELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTV 420 F +D FQ A+ L GR +VIVSAPTGSGKTV GE A + + G V YTTPLKALSNQKF DF++QFGEE+VGLLTGD S NRD ++V V+TTEV+RNMLYD + + DV +V+ DEFHYMNDR+RGTV Sbjct: 6 FPIDRFQLGAVEALVGRRSVIVSAPTGSGKTVCGE-AAVYAGLALGKRVLYTTPLKALSNQKFYDFKQQFGEERVGLLTGDVSVNRDK--ASVLVLTTEVYRNMLYDKDSDA-VRDVHSVILDEFHYMNDRERGTV 137
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: F0YDH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDH3_AURAN) HSP 1 Score: 166 bits (421), Expect = 2.350e-46 Identity = 94/141 (66.67%), Postives = 101/141 (71.63%), Query Frame = 1 Query: 1 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSEETGDL-DDVFAVVFDEFHYMNDRDRGTV 420 A FPF LD FQ +ALR L NVIVSAPTGSGKTV GELA + + G VFYTTPLKALSNQKF DF QFG +VGL TGDS RDA V VMTTEVFRNM+YD E ++ DVFAVVFDEFHYMND RGTV Sbjct: 71 ACFPFPLDAFQRDALRSLRADRNVIVSAPTGSGKTVAGELA-IAYALSVGKRVFYTTPLKALSNQKFGDFCAQFGAGRVGLSTGDSGVRRDAA---VVVMTTEVFRNMIYDDEGRAEIAKDVFAVVFDEFHYMNDAQRGTV 207
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Match: A0A2P8VGS3_9CYAN (DEAD/DEAH box helicase (Fragment) n=1 Tax=filamentous cyanobacterium CCT1 TaxID=2107702 RepID=A0A2P8VGS3_9CYAN) HSP 1 Score: 157 bits (396), Expect = 1.060e-45 Identity = 90/142 (63.38%), Postives = 100/142 (70.42%), Query Frame = 1 Query: 4 LFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAGLVTWIGRGT*VFYTTPLKALSNQKFQDFRRQFGEEKVGLLTGDSSFNRDAQASNVAVMTTEVFRNMLYDSE--ETGD-LDDVFAVVFDEFHYMNDRDRGTV 420 LFPF LD FQ EA L +V+V APTGSGKT++GE A + + G VFYTTPLKALSNQK +DFR QFG+E VGLLTGD S NRDA V VMTTE+FRNMLY + ETG L V AVV DE HYMNDR RGTV Sbjct: 16 LFPFPLDDFQYEAAAALDADKSVVVCAPTGSGKTLIGEYA-IYRALDHGKRVFYTTPLKALSNQKLRDFRNQFGDENVGLLTGDLSINRDAP---VVVMTTEIFRNMLYGTRIGETGTTLQQVEAVVLDECHYMNDRQRGTV 153 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10000.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10000.17.1 >prot_Ecto-sp8_S_contig10000.17.1 ID=prot_Ecto-sp8_S_contig10000.17.1|Name=mRNA_Ecto-sp8_S_contig10000.17.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=41bp MTTEVFRNMLYDSEETGDLDDVFAVVFDEFHYMNDRDRGTVback to top mRNA from alignment at Ecto-sp8_S_contig10000:537..1758- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10000.17.1 ID=mRNA_Ecto-sp8_S_contig10000.17.1|Name=mRNA_Ecto-sp8_S_contig10000.17.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1222bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10000:537..1758- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10000:537..1758- >mRNA_Ecto-sp8_S_contig10000.17.1 ID=mRNA_Ecto-sp8_S_contig10000.17.1|Name=mRNA_Ecto-sp8_S_contig10000.17.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10000:537..1758- (Ectocarpus species8 EcLAC_412)back to top |