Homology
BLAST of mRNA_Ecto-sp8_S_contig100.16.1 vs. uniprot
Match:
Q6XM58_9PHYC (FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC)
HSP 1 Score: 94.0 bits (232), Expect = 1.140e-22
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 4 CRDLCARSQHSRFHHGAVTVLRRGHRMLGKGSNRHNAHAEVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCVNCLTFMKANHVTRVFFTDGSG-FTKINL 312
C+ L SQH F HGA+ R ++GKGSNR + HAEVS+++ + Q +H L VYVCRVN+ G+FMNS+PC NC+ +MK V RV+++D +G F+K+ L
Sbjct: 12 CQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNV-QGGQHMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKLVL 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100.16.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.14e-22 / Id = 48.08 Sequence Q6XM58_9PHYC
Match Name E-value Identity Description
Q6XM58_9PHYC 1.140e-22 48.08 FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Model size 315
Hectar predicted targeting category other localisation
Exons 1
Cds size 315
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681143097.027311-CDS-Ecto-sp8_S_contig100:30310..30625 1681143097.027311-CDS-Ecto-sp8_S_contig100:30310..30625 Ectocarpus species8 EcLAC_412 CDS Ecto-sp8_S_contig100 30311..30625 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100.16.1
>prot_Ecto-sp8_S_contig100.16.1 ID=prot_Ecto-sp8_S_contig100.16.1|Name=mRNA_Ecto-sp8_S_contig100.16.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MCRDLCARSQHSRFHHGAVTVLRRGHRMLGKGSNRHNAHAEVSSIKAIPQ YQRHDNLVVYVCRVNSSGRFMNSRPCVNCLTFMKANHVTRVFFTDGSGFT KINL* back to top mRNA from alignment at Ecto-sp8_S_contig100:30311..30625+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig100.16.1 ID=mRNA_Ecto-sp8_S_contig100.16.1|Name=mRNA_Ecto-sp8_S_contig100.16.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:30311..30625+ (Ectocarpus species8 EcLAC_412)ATGTGCAGAGATCTCTGCGCGAGGTCTCAGCACTCGAGATTCCACCACGG
CGCGGTGACAGTCCTTCGAAGAGGTCACCGCATGCTGGGGAAAGGCAGCA
ATCGCCACAATGCACACGCTGAAGTCAGCTCAATCAAGGCCATTCCACAA
TACCAGCGGCACGATAACTTGGTCGTTTACGTATGTAGAGTGAATTCTTC
CGGCAGATTCATGAACTCCAGACCATGCGTCAATTGTTTAACTTTTATGA
AGGCCAACCACGTCACGAGAGTCTTCTTCACAGACGGATCCGGGTTCACC
AAAATCAACCTGTAA back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100:30311..30625+
>mRNA_Ecto-sp8_S_contig100.16.1 ID=mRNA_Ecto-sp8_S_contig100.16.1|Name=mRNA_Ecto-sp8_S_contig100.16.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:30311..30625+ (Ectocarpus species8 EcLAC_412) ATGTGCAGAGATCTCTGCGCGAGGTCTCAGCACTCGAGATTCCACCACGG CGCGGTGACAGTCCTTCGAAGAGGTCACCGCATGCTGGGGAAAGGCAGCA ATCGCCACAATGCACACGCTGAAGTCAGCTCAATCAAGGCCATTCCACAA TACCAGCGGCACGATAACTTGGTCGTTTACGTATGTAGAGTGAATTCTTC CGGCAGATTCATGAACTCCAGACCATGCGTCAATTGTTTAACTTTTATGA AGGCCAACCACGTCACGAGAGTCTTCTTCACAGACGGATCCGGGTTCACC AAAATCAACCTGTAA back to top