mRNA_Ecto-sp8_S_contig100.15.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig100.15.1 vs. uniprot
Match: B5LWH5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC) HSP 1 Score: 82.4 bits (202), Expect = 5.810e-17 Identity = 57/153 (37.25%), Postives = 86/153 (56.21%), Query Frame = 1 Query: 1 VACGTIVHNDKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLDASGQSAHVELSTLVTVDGERSMQPV-IKSSPTSTTFSSLRGGLVANLTIDGSISWDRDESCLYFAANRAFRFKYIESNGISPSMLVLEGLNPTTL--QYTPKFEISSD 450 ++CG +VH + + G+ +S F YD++S + EVSR+ ++D+S S S +MQPV I +S S SS L LT+DG ISWD +CLY +A++ FRF++ ES+G++PS L+LE L Y PK E +S+ Sbjct: 20 MSCGDVVHGEVVNI--GDLVCSS-FSYDEESGEAREVSRDDVIVDSSSGSVSFRSSVR---SKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100.15.1 >prot_Ecto-sp8_S_contig100.15.1 ID=prot_Ecto-sp8_S_contig100.15.1|Name=mRNA_Ecto-sp8_S_contig100.15.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=151bp VACGTIVHNDKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLDASGQSback to top mRNA from alignment at Ecto-sp8_S_contig100:26366..26818- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig100.15.1 ID=mRNA_Ecto-sp8_S_contig100.15.1|Name=mRNA_Ecto-sp8_S_contig100.15.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:26366..26818- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100:26366..26818- >mRNA_Ecto-sp8_S_contig100.15.1 ID=mRNA_Ecto-sp8_S_contig100.15.1|Name=mRNA_Ecto-sp8_S_contig100.15.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:26366..26818- (Ectocarpus species8 EcLAC_412)back to top |