mRNA_Ecto-sp8_S_contig100.14.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig100.14.1 vs. uniprot
Match: B5LWH1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH1_9PHYC) HSP 1 Score: 93.6 bits (231), Expect = 8.270e-22 Identity = 49/109 (44.95%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 13 QRSDIERQLKQLPTSFTSTEITSMYRNLRQDLEKLKTEGVPQALAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMMIKQRLDSGDITQEEARDLIVDSAKQHI 339 QR+ +ER+L++LPTSF+S EI +M +L+ D+ G+ L+E L+++HK+LA++YP+LFFK+V+GE HIF + + IK LD G+IT E A+ L+V AK+ + Sbjct: 3 QRAAVERELRKLPTSFSSAEIRAMCNDLKADV------GLG-LLSESRLYAKHKVLAYAYPSLFFKIVRGEFDLHIFESLLKIKSSLDRGEITDERAKQLVVLGAKEQL 104
BLAST of mRNA_Ecto-sp8_S_contig100.14.1 vs. uniprot
Match: D8LPF6_ECTSI (EsV-1-130 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPF6_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 4.090e-20 Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 46 LPTSFTSTEITSMYRNLRQDLE--KLKTEGVPQALAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMMIKQRLDSGDITQEEARDLIVDSAKQHI 339 LP SF S+ I+ MY L +D++ K K+ G+ Q E +LH RHK LAFSYP+LFFK+V+GE+ + + + +KQRLD D++ ++AR+ ++D AK I Sbjct: 18 LPESFVSSTISEMYAALERDIQVIKSKSPGMTQKQMEIVLHQRHKKLAFSYPSLFFKIVRGEVDPAMLASLLSLKQRLDERDVSLDDARNRVIDYAKIQI 117
BLAST of mRNA_Ecto-sp8_S_contig100.14.1 vs. uniprot
Match: Q6XM79_9PHYC (FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM79_9PHYC) HSP 1 Score: 88.2 bits (217), Expect = 5.640e-20 Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 16 RSDIERQLKQLPTSFTSTEITSMYRNLRQDLEKLKTEGVPQALAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMMIKQRLDSGDITQEEARDLIVDSAKQHI 339 +S ++R++ LP SFTS EI M+ +L +D+E + G P + ++ +RHK LAFSYP+LF+K +KG+M H+ + + IK LD+G I+Q+ AR+++VD AK+ I Sbjct: 2 QSYVKREISNLPGSFTSEEIDRMHSDLIKDMEAYR--GHPHF--DTVMCARHKTLAFSYPSLFYKTIKGDMEPHLLRSILHIKHLLDTGKISQDRAREMVVDGAKKQI 105
BLAST of mRNA_Ecto-sp8_S_contig100.14.1 vs. uniprot
Match: Q8QNE9_ESV1K (EsV-1-130 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNE9_ESV1K) HSP 1 Score: 87.8 bits (216), Expect = 7.780e-20 Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 16 RSDIERQLKQ-LPTSFTSTEITSMYRNLRQDLEKL--KTEGVPQALAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMMIKQRLDSGDITQEEARDLIVDSAKQHI 339 R ++E ++ LP SF ++ I+ MY L +D+ + K+ G+ Q E MLH RHK LAFSYP LFFK+V+GE+ + T+ + +KQ LD D++ E AR+ ++D AK I Sbjct: 5 RQEVEEYIENNLPESFVASTISEMYAALERDIRLIRSKSPGMDQKQMEMMLHQRHKKLAFSYPGLFFKIVRGEVDPAMLTSLLSLKQSLDERDVSLEVARNRVIDYAKSQI 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100.14.1 >prot_Ecto-sp8_S_contig100.14.1 ID=prot_Ecto-sp8_S_contig100.14.1|Name=mRNA_Ecto-sp8_S_contig100.14.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=113bp MPAGQRSDIERQLKQLPTSFTSTEITSMYRNLRQDLEKLKTEGVPQALAEback to top mRNA from alignment at Ecto-sp8_S_contig100:14485..14823- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig100.14.1 ID=mRNA_Ecto-sp8_S_contig100.14.1|Name=mRNA_Ecto-sp8_S_contig100.14.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:14485..14823- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100:14485..14823- >mRNA_Ecto-sp8_S_contig100.14.1 ID=mRNA_Ecto-sp8_S_contig100.14.1|Name=mRNA_Ecto-sp8_S_contig100.14.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:14485..14823- (Ectocarpus species8 EcLAC_412)back to top |