mRNA_Ecto-sp8_S_contig100.13.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI) HSP 1 Score: 158 bits (400), Expect = 3.380e-46 Identity = 80/180 (44.44%), Postives = 109/180 (60.56%), Query Frame = 1 Query: 1 MRYAFVPIAGAHEQAPLAWAGPLKNLVPTVRRHLNTNDKQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKTLHESKNAVKMVHVPFTLAAKKVYIFSREEELQFPVDKKTPLQAVSQGCGLSLLTYEK--KKLIS--PHATEFDKMLSEFVFKPV 528 MR F+P+ G QAP+A+ GP NL P R+HL + KQ +L QR CN CG I L P ANCDADH++ V RGG T EN Q+LCV CHR+KT E+ + + V V VYIF+ + P DK+TPL+A+ GC LS++TY++ +K++ ++ KML FV+ PV Sbjct: 1 MRCTFLPVFGGVGQAPVAYVGPSHNLRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLEAGGSPRTVEVALEPGDSNVYIFTGGT-MDLPCDKRTPLEAIGDGCALSIITYKRVNRKVVKVVDEGVDYAKMLQRFVYNPV 179
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI) HSP 1 Score: 157 bits (398), Expect = 8.390e-46 Identity = 83/179 (46.37%), Postives = 108/179 (60.34%), Query Frame = 1 Query: 1 MRYAFVPIAGAHEQAPLAWAGPLKNLVPTVRRHLNTNDKQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKTLHESKNAVKMVHVPFTLAAKKVYIFSREEELQFPVDKKTPLQAVSQGCGLSLLTYEK--KKLISPHATEFD--KMLSEFVFKP 525 M++ F+P+ P+A+ GP NL P R+HL K IL RQR CN CG I +YP A+CDADHI+ V RGG T ENM LLC+ CHRRKT E+ + V V VYIF+ E L +PVDK+TPL+A++ GC LSLLT+ K + + P E D KML++F + P Sbjct: 1 MKHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVALEPGDTSVYIFT-EGVLAYPVDKRTPLEAITNGCALSLLTFNKVDRAYVEPAYGEVDYAKMLAKFAYTP 178
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K) HSP 1 Score: 157 bits (397), Expect = 1.190e-45 Identity = 84/179 (46.93%), Postives = 106/179 (59.22%), Query Frame = 1 Query: 1 MRYAFVPIAGAHEQAPLAWAGPLKNLVPTVRRHLNTNDKQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKTLHESKNAVKMVHVPFTLAAKKVYIFSREEELQFPVDKKTPLQAVSQGCGLSLLTYEK--KKLISPHATEFD--KMLSEFVFKP 525 M + F+P+ P+A+ GP NL P R+HL K IL RQR CN G I +YP ANCDADHI+ V RGG T ENM LLC+ CHRRKT E+ + V+V VYIF+ E L FPVDK+TPL+A+ GC LSLL+Y++ + + P E D KML FV+ P Sbjct: 1 MTHLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVALEPGDTSVYIFT-EGVLAFPVDKRTPLEAIGDGCALSLLSYKRVDRTFVEPAYEEVDYAKMLQRFVYTP 178
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: A0A2V3HGY1_9EURY (HNHc domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2V3HGY1_9EURY) HSP 1 Score: 57.8 bits (138), Expect = 8.410e-8 Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 1 Query: 82 PTVRRHLNTNDKQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRK 285 P R HL+ + ++ IL R + C CG N + DH++P+ RGG +EN+QLLC C+RRK Sbjct: 43 PASRNHLSASKRKRILLRGKGRCVKCGSR------ENLEIDHVVPLARGGSNRLENLQLLCQDCNRRK 104
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: A0A1Q4VC37_9ACTN (HNHc domain-containing protein n=1 Tax=Streptomyces uncialis TaxID=1048205 RepID=A0A1Q4VC37_9ACTN) HSP 1 Score: 57.4 bits (137), Expect = 1.150e-7 Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 115 KQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKTLHESK 303 + +L R R C C H EL + DHI+PV RGG ++N+ +LC +CHRRKT +E + Sbjct: 50 RARVLARDRFACQRCSSHKEL------EVDHIVPVARGGSWELDNLWVLCRSCHRRKTYYEDR 106
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: A0A1Q9CD12_SYMMI (Putative DNA (Cytosine-5)-methyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CD12_SYMMI) HSP 1 Score: 59.3 bits (142), Expect = 4.690e-7 Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 67 LKNLVPTVRRHLNTNDKQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKTL 291 L L+ R +T +Q IL +Q +CN CG I+ C+ DH++PV + +++Q LC+ CHR KTL Sbjct: 648 LMQLIKAERTQPSTGTRQAILEQQNSLCNSCGAEIQ---PGTCELDHVVPVHQAFSDDKQDLQALCLRCHRNKTL 719
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: A0A812NPH3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NPH3_9DINO) HSP 1 Score: 59.3 bits (142), Expect = 4.700e-7 Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 67 LKNLVPTVRRHLNTNDKQEILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKTL 291 L L+ R +T +Q IL +Q +CN CG I+ C+ DH++PV + +++Q LC+ CHR KTL Sbjct: 472 LMQLIKAERTQPSTGTRQAILEQQNSLCNSCGAEIQ---PGTCELDHVVPVHQAFSDDKQDLQALCLRCHRNKTL 543
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: A0A5J6I702_STRC4 (HNHc domain-containing protein n=2 Tax=Streptomyces coeruleorubidus TaxID=116188 RepID=A0A5J6I702_STRC4) HSP 1 Score: 54.3 bits (129), Expect = 2.830e-6 Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 115 KQEILHRQRRMCNGCG----GHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRK 285 ++ + +R R C GCG G I+ + VA+ D H++P+ RGG+ V N+QLLC C++RK Sbjct: 58 RKAVFYRDRGRCTGCGVNLSGLIDTFDVAHYD--HMMPLSRGGLNDVTNLQLLCERCNKRK 116
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: A0A2E2L3V3_9MICO (HNH endonuclease n=1 Tax=Microbacterium sp. TaxID=51671 RepID=A0A2E2L3V3_9MICO) HSP 1 Score: 55.5 bits (132), Expect = 6.970e-6 Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 Query: 124 ILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKT 288 I HR + C C + P + DHI+P+ RGG++ V+N+Q LC C+R K+ Sbjct: 274 IKHRDKHRCKSCSASVAAEPNLLLEVDHIIPISRGGLSTVDNLQTLCWRCNRSKS 328
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Match: UPI001672EDC8 (Uncharacterized protein n=1 Tax=Streptomyces albulus TaxID=68570 RepID=UPI001672EDC8) HSP 1 Score: 51.2 bits (121), Expect = 7.480e-6 Identity = 24/55 (43.64%), Postives = 32/55 (58.18%), Query Frame = 1 Query: 124 ILHRQRRMCNGCGGHIELYPVANCDADHILPVMRGGITAVENMQLLCVTCHRRKT 288 +L R R C CG EL + DHI+ V RGG ++N+ +LC TCHR+KT Sbjct: 1 MLARDRFACQSCGSRTEL------EVDHIVSVSRGGSWELDNLWVLCRTCHRKKT 49 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100.13.1 >prot_Ecto-sp8_S_contig100.13.1 ID=prot_Ecto-sp8_S_contig100.13.1|Name=mRNA_Ecto-sp8_S_contig100.13.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=177bp MRYAFVPIAGAHEQAPLAWAGPLKNLVPTVRRHLNTNDKQEILHRQRRMCback to top mRNA from alignment at Ecto-sp8_S_contig100:10593..11123+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig100.13.1 ID=mRNA_Ecto-sp8_S_contig100.13.1|Name=mRNA_Ecto-sp8_S_contig100.13.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:10593..11123+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100:10593..11123+ >mRNA_Ecto-sp8_S_contig100.13.1 ID=mRNA_Ecto-sp8_S_contig100.13.1|Name=mRNA_Ecto-sp8_S_contig100.13.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:10593..11123+ (Ectocarpus species8 EcLAC_412)back to top |