mRNA_Ecto-sp8_S_contig100.11.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig100.11.1 vs. uniprot
Match: B5LWC8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC8_9PHYC) HSP 1 Score: 108 bits (270), Expect = 3.540e-28 Identity = 50/111 (45.05%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 28 LSYWKVGAAIVFFVAATSSLSSKCYENQTMPRKHVLKLVDMLRSAGEYSIRASQSTNAVTIYADTCSARNAVNTVADLLTPQQVKTLTGVNLCEIKEFISQQHQNATEVLL 360 ++YWK ++ +AA S+LS KCYE +PR+HVLK+ ++LR+A E+S+RASQ + ++ DTC A+ ++ VA LLT +QV+ + +++ EIKEFI+ QH AT LL Sbjct: 1 MTYWKASCTLLLTLAAVSALSRKCYETSRLPRRHVLKITELLRTAAEHSLRASQDSRPENVFHDTCQAKVNIDLVAQLLTREQVRHIANIDIDEIKEFIATQHLKATATLL 111
BLAST of mRNA_Ecto-sp8_S_contig100.11.1 vs. uniprot
Match: Q8QKV6_ESV1K (EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K) HSP 1 Score: 104 bits (260), Expect = 1.270e-26 Identity = 50/120 (41.67%), Postives = 80/120 (66.67%), Query Frame = 1 Query: 1 MERLNPHLSLSYWKVGAAIVFFVAATSSLSSKCYENQTMPRKHVLKLVDMLRSAGEYSIRASQSTNAVTIYADTCSARNAVNTVADLLTPQQVKTLTGVNLCEIKEFISQQHQNATEVLL 360 M+R+N +++YWK+ +V FV TS LS + +E+ +PR+H+LK ++LR A SI+++Q + V + D+ A AVN V++ LTP QVK + V++ E+KEFIS+QH +AT L+ Sbjct: 1 MDRMNQRSAMAYWKLSTIVVVFVGVTSYLSVRAHESSKLPREHILKYSELLREAARASIQSTQDQHPVQSFIDSSKAMCAVNIVSEFLTPHQVKHIMNVDIGEMKEFISKQHDDATSALV 120
BLAST of mRNA_Ecto-sp8_S_contig100.11.1 vs. uniprot
Match: Q6XM04_9PHYC (FirrV-1-B32 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM04_9PHYC) HSP 1 Score: 99.8 bits (247), Expect = 8.920e-25 Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1 Query: 1 MERLNPHLSLSYWKVGAAIVFFVAATSSLSSKCYENQTMPRKHVLKLVDMLRSAGEYSIRASQSTNAVTIYADTCSARNAVNTVADLLTPQQVKTLTGVNLCEIKEFIS 327 MERLNP S++YWK ++ V TS +S KC++ +PR H+LK+ ++LR E+SI ASQS T Y DTC A+ +N V++LLTP+Q+ L+G+++ E+K I+ Sbjct: 1 MERLNPQASMTYWKASILLLTSVVLTSWISKKCFQQSKLPRHHLLKISELLRRGIEHSIAASQSPT--TRYRDTCKAKIYINLVSELLTPEQILDLSGIDIHELKHLIT 107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100.11.1 >prot_Ecto-sp8_S_contig100.11.1 ID=prot_Ecto-sp8_S_contig100.11.1|Name=mRNA_Ecto-sp8_S_contig100.11.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp MERLNPHLSLSYWKVGAAIVFFVAATSSLSSKCYENQTMPRKHVLKLVDMback to top mRNA from alignment at Ecto-sp8_S_contig100:7984..8343+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig100.11.1 ID=mRNA_Ecto-sp8_S_contig100.11.1|Name=mRNA_Ecto-sp8_S_contig100.11.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:7984..8343+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100:7984..8343+ >mRNA_Ecto-sp8_S_contig100.11.1 ID=mRNA_Ecto-sp8_S_contig100.11.1|Name=mRNA_Ecto-sp8_S_contig100.11.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:7984..8343+ (Ectocarpus species8 EcLAC_412)back to top |