mRNA_Ecto-sp8_S_contig100.10.1 (mRNA) Ectocarpus species8 EcLAC_412
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig100.10.1 vs. uniprot
Match: B5LWK7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC) HSP 1 Score: 132 bits (332), Expect = 3.340e-36 Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 1 Query: 10 IIAGAVKGGLHGLLVGIALGVAGNIMAPPVDYAKVLVWENRYGKKTKFTNLETASILIDDLVKIHEVRAHNIGAYNEAFRNLQSVITLYHGVKSEEREVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIMAAGVESAMMNIQLSVEEFINFTREKSKHALP 498 ++ G V+GGL G + G+ LG AG++ + LVW NR G+ +FT+L + L DDL + R A+NEAFRN+Q+VI++YH VK E +MM +MTN+ +RASKA+ A++ LA D + AA E AMM+IQLS+EE I+F R KSK +LP Sbjct: 3 LVRGVVRGGLFGFVGGLILGAAGSLSSNSESAEVELVWTNREGRTVRFTHLGSIPSLRDDLYTVFHHREFKRDAFNEAFRNIQNVISVYHPVK-EAAVANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLP 164
BLAST of mRNA_Ecto-sp8_S_contig100.10.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC) HSP 1 Score: 128 bits (321), Expect = 2.160e-34 Identity = 78/171 (45.61%), Postives = 100/171 (58.48%), Query Frame = 1 Query: 4 DRIIAGAVKGGLHGLLVGIALGVAGNIMAPPVDYAKVLVWENRYGKKTKFTNLETASILIDDLVKIHEVRAHNIGAYNEAFRNLQSVITLYHGVKS----EEREVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIMAAGVESAMMNIQLSVEEFINFTREKSKHALPKI 504 ++ G KGGL+GL GI LG AG + P + LVW GKK + L L D L I + R N A+NEAFRN+Q+V+++YH S + D+M +MTNYT+RASKAMEAV++S L D AA E AMM IQL++EE IN R KSK +LP I Sbjct: 3 SALMKGCFKGGLYGLCGGIFLGAAGALT--PSQTPEQLVWTTHQGKKVRLVYLHHVPGLKDHLTVIFQHRTRNERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
BLAST of mRNA_Ecto-sp8_S_contig100.10.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K) HSP 1 Score: 101 bits (251), Expect = 6.560e-24 Identity = 59/170 (34.71%), Postives = 95/170 (55.88%), Query Frame = 1 Query: 4 DRIIAGAVKGGLHGLLVGIALGVAGNIMAPPVDYAKVLVWENRYGKKTKFTNLETASI--LIDDLVKIHEVRAHNIGAYNEAFRNLQSVITLYHGVKSE-EREVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIMAAGVESAMMNIQLSVEEFINFTREKSKHALPKI 504 + G +G + G+L G LG GN+ A + V+ W++R G KF +LE + DL+ IH R ++ A+N+A R++QSV LY + E + +M +++TNY+I A+K+M A+ +S A + ++ VE +MM + L+ EE IN R SK LP+I Sbjct: 7 SKAFGGGARGAMFGILGGFVLGAVGNVFADGLSTVDVVYWKDRRGTTKKFADLEVLESFDIYKDLLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
BLAST of mRNA_Ecto-sp8_S_contig100.10.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.410e-9 Identity = 40/113 (35.40%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 136 GKKTKFTNLETASI--LIDDLVKIHEVRAHNIGAYNEAFRNLQSVITLYHG-VKSEEREVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIMAAGVESAMMNIQLSVEEFIN 465 G+ KF +LE + DL+++H R + A+ +A R++QSVI LY+ + + R V +M ++TNY+I A+K+M A+ +S A + ++ VE +MM+I L+ E+ IN Sbjct: 155 GQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIIN 267 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig100.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig100.10.1 >prot_Ecto-sp8_S_contig100.10.1 ID=prot_Ecto-sp8_S_contig100.10.1|Name=mRNA_Ecto-sp8_S_contig100.10.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=170bp MDRIIAGAVKGGLHGLLVGIALGVAGNIMAPPVDYAKVLVWENRYGKKTKback to top mRNA from alignment at Ecto-sp8_S_contig100:3052..3561+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig100.10.1 ID=mRNA_Ecto-sp8_S_contig100.10.1|Name=mRNA_Ecto-sp8_S_contig100.10.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:3052..3561+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig100:3052..3561+ >mRNA_Ecto-sp8_S_contig100.10.1 ID=mRNA_Ecto-sp8_S_contig100.10.1|Name=mRNA_Ecto-sp8_S_contig100.10.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp8_S_contig100:3052..3561+ (Ectocarpus species8 EcLAC_412)back to top |